Andreas Müller [Thu, 5 Sep 2019 21:30:47 +0000 (23:30 +0200)]
cleanup and remove ITaxonNameBase.getNomenclaturalCode
Andreas Müller [Thu, 5 Sep 2019 21:21:54 +0000 (23:21 +0200)]
rename TaxonNameDefaultCacheStrategyTest
Andreas Kohlbecker [Thu, 5 Sep 2019 14:01:34 +0000 (16:01 +0200)]
fix #8519 adding ROLE_USER_MANAGER to FirstDataInserter
Andreas Kohlbecker [Wed, 4 Sep 2019 12:38:46 +0000 (14:38 +0200)]
ref #8505 adapting ApplicationConfiguration
Andreas Kohlbecker [Wed, 4 Sep 2019 09:56:42 +0000 (11:56 +0200)]
ref #8517 DerivedUnitFacadeCacheStrategy handling protected FieldUnit title caches correctly
Andreas Kohlbecker [Wed, 4 Sep 2019 08:33:49 +0000 (10:33 +0200)]
ref #8505 removing test code
Andreas Kohlbecker [Wed, 4 Sep 2019 08:31:28 +0000 (10:31 +0200)]
ref #8505 making getCdmHomeSubDirFallback() static again
Andreas Müller [Wed, 4 Sep 2019 00:26:58 +0000 (02:26 +0200)]
ref #1444, ref #8509 fix problems in TimePeriod mapping and toXXX method
Andreas Müller [Wed, 4 Sep 2019 00:26:12 +0000 (02:26 +0200)]
ref #1444, ref #8509 add last action mapping
Andreas Müller [Wed, 4 Sep 2019 00:25:13 +0000 (02:25 +0200)]
ref #1444, ref #8509 add DOI mapper
Andreas Müller [Wed, 4 Sep 2019 00:24:46 +0000 (02:24 +0200)]
ref #1444, ref #8509 better handling of trim in mappers
Andreas Müller [Wed, 4 Sep 2019 00:22:36 +0000 (02:22 +0200)]
cleanup
Andreas Müller [Mon, 2 Sep 2019 15:30:33 +0000 (17:30 +0200)]
minor
Andreas Kohlbecker [Tue, 3 Sep 2019 14:09:27 +0000 (16:09 +0200)]
fix #8513 removing MUST-EXIST file and getResourceFolderSeperator() method
Andreas Kohlbecker [Tue, 3 Sep 2019 13:29:26 +0000 (15:29 +0200)]
ref #8505 renaming method to getResourceFolderSeperator() and adapting documentation
Andreas Kohlbecker [Tue, 3 Sep 2019 13:12:29 +0000 (15:12 +0200)]
fix #8505 turning statical methods of ConfigFileUtil into non statical bean methods
Andreas Müller [Mon, 2 Sep 2019 14:45:45 +0000 (16:45 +0200)]
ref #1444 Add TimePeriodMapper for Referece.year import
Andreas Müller [Mon, 2 Sep 2019 14:44:10 +0000 (16:44 +0200)]
cleanup
pplitzner [Fri, 30 Aug 2019 13:39:49 +0000 (15:39 +0200)]
ref #8488 Recurse sub types of term types
Andreas Müller [Sun, 1 Sep 2019 22:13:42 +0000 (00:13 +0200)]
fix compile error
Andreas Müller [Sun, 1 Sep 2019 21:06:19 +0000 (23:06 +0200)]
Exception handling in DbSingleAttributeExportMapperBase
Andreas Müller [Sun, 1 Sep 2019 17:06:44 +0000 (19:06 +0200)]
minor
Andreas Müller [Sun, 1 Sep 2019 15:52:43 +0000 (17:52 +0200)]
ref #8508 add uniqueResult methods to Source
Andreas Müller [Sun, 1 Sep 2019 15:49:34 +0000 (17:49 +0200)]
ref #1444 add some ISO 639-3 languages for ERMS import
Andreas Müller [Sun, 1 Sep 2019 15:48:17 +0000 (17:48 +0200)]
error handling in Language csv reading
Andreas Müller [Sun, 1 Sep 2019 15:47:28 +0000 (17:47 +0200)]
cleanup and add new TermVocabulary.NewInstance method
Andreas Müller [Sat, 31 Aug 2019 12:47:39 +0000 (14:47 +0200)]
ref #1444 handle truncated source.name (reference.titleCache)
Andreas Müller [Sat, 31 Aug 2019 12:27:14 +0000 (14:27 +0200)]
cleanup
Andreas Müller [Fri, 30 Aug 2019 14:35:22 +0000 (16:35 +0200)]
remove deprecated listRankSpecificRootNodes
jenkins [Thu, 29 Aug 2019 16:35:01 +0000 (18:35 +0200)]
Updating develop poms back to pre merge state
jenkins [Thu, 29 Aug 2019 16:35:00 +0000 (18:35 +0200)]
Merge branch 'master' into develop
jenkins [Thu, 29 Aug 2019 16:34:59 +0000 (18:34 +0200)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 29 Aug 2019 16:34:55 +0000 (18:34 +0200)]
Merge branch 'release/5.9.0'
jenkins [Thu, 29 Aug 2019 16:17:06 +0000 (18:17 +0200)]
updating poms for branch'release/5.9.0' with non-snapshot versions
jenkins [Thu, 29 Aug 2019 14:11:25 +0000 (16:11 +0200)]
updating poms for 5.10.0-SNAPSHOT development
Patrick Plitzner [Thu, 29 Aug 2019 14:06:52 +0000 (16:06 +0200)]
ref #8248 Minor fixes for session saving
Andreas Müller [Thu, 29 Aug 2019 13:04:58 +0000 (15:04 +0200)]
ref #8441 remove cascading from FeatureState.feature and .state
Katja Luther [Thu, 29 Aug 2019 08:58:28 +0000 (10:58 +0200)]
avoid NPE in abcd import
Katja Luther [Thu, 29 Aug 2019 08:52:37 +0000 (10:52 +0200)]
smaller issues in Abcd import
Patrick Plitzner [Thu, 29 Aug 2019 07:11:44 +0000 (09:11 +0200)]
ref #8248 Check existing feature/state of FeatureState during import
Patrick Plitzner [Thu, 29 Aug 2019 07:10:43 +0000 (09:10 +0200)]
ref #8248 Adapt to new term node service
Patrick Plitzner [Wed, 28 Aug 2019 14:46:22 +0000 (16:46 +0200)]
ref #8248 Fix import of character structure and property
Katja Luther [Wed, 28 Aug 2019 13:25:28 +0000 (15:25 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Wed, 28 Aug 2019 13:24:04 +0000 (15:24 +0200)]
SpecimenTypeDesignation representations for names
Patrick Plitzner [Wed, 28 Aug 2019 12:53:09 +0000 (14:53 +0200)]
ref #8248 Import applicability feature states
Patrick Plitzner [Wed, 28 Aug 2019 10:57:28 +0000 (12:57 +0200)]
ref #6774 export feature states
Patrick Plitzner [Wed, 28 Aug 2019 10:14:44 +0000 (12:14 +0200)]
ref #6794 Fix endless loop in OWL export
Patrick Plitzner [Wed, 28 Aug 2019 09:33:00 +0000 (11:33 +0200)]
ref #6794 Add progress monitor break point
Patrick Plitzner [Wed, 28 Aug 2019 09:32:46 +0000 (11:32 +0200)]
ref #6794 Fix potential ClassCastException
Katja Luther [Wed, 28 Aug 2019 07:17:01 +0000 (09:17 +0200)]
adapt cdm light column names
Andreas Müller [Wed, 28 Aug 2019 00:06:09 +0000 (02:06 +0200)]
fix NPE in setNomenclaturalSource
Andreas Müller [Wed, 28 Aug 2019 00:05:45 +0000 (02:05 +0200)]
revert JAXB issues on NamedArea
Andreas Müller [Wed, 28 Aug 2019 00:05:25 +0000 (02:05 +0200)]
cleanup
Andreas Müller [Tue, 27 Aug 2019 23:43:04 +0000 (01:43 +0200)]
remove redundant JAXB parameters from NamedArea
Andreas Müller [Tue, 27 Aug 2019 23:42:19 +0000 (01:42 +0200)]
ref #8479 add listUUIDs method
Andreas Müller [Tue, 27 Aug 2019 23:41:49 +0000 (01:41 +0200)]
cleanup
Andreas Müller [Tue, 27 Aug 2019 14:36:07 +0000 (16:36 +0200)]
improved logging for TaxonNode with missing sortIndex
Andreas Müller [Tue, 27 Aug 2019 14:35:37 +0000 (16:35 +0200)]
ref #8479 propertyPaths fix for TermVocabulary
Andreas Müller [Tue, 27 Aug 2019 14:32:45 +0000 (16:32 +0200)]
ref #8479 add concurrency, TaxonNodeOutStreamPartitionerConcurrent
Andreas Müller [Tue, 27 Aug 2019 14:26:24 +0000 (16:26 +0200)]
ref #8479 ordering for taxon nodes implemented in TaxonNodeFilter and in loadById
Andreas Müller [Tue, 27 Aug 2019 13:28:00 +0000 (15:28 +0200)]
ref #8479 propertyPaths for TaxonNodeOutStreamPartitioner and introduce interface ITaxonNodeOutStreamPartitioner
Andreas Müller [Tue, 27 Aug 2019 13:02:19 +0000 (15:02 +0200)]
minor
Katja Luther [Tue, 27 Aug 2019 10:06:50 +0000 (12:06 +0200)]
ref #8385: label issues
Katja Luther [Tue, 27 Aug 2019 07:08:51 +0000 (09:08 +0200)]
ref #8299: CdmLightExportTable new column
Katja Luther [Mon, 26 Aug 2019 12:55:17 +0000 (14:55 +0200)]
ref #8299: add TypeCache and TypeString to homotypical group table
Andreas Müller [Sun, 25 Aug 2019 11:35:09 +0000 (13:35 +0200)]
ref #8479 allow manual last commit for TaxonNodeOutStreamPartitioner
Andreas Müller [Fri, 23 Aug 2019 22:44:21 +0000 (00:44 +0200)]
allow TaxonNodeOutStreamPartitioner to be readOnly = false and use in in CsvNameExport preliminary
Andreas Müller [Fri, 23 Aug 2019 22:43:31 +0000 (00:43 +0200)]
cleanup
Andreas Müller [Fri, 23 Aug 2019 21:55:24 +0000 (23:55 +0200)]
remove setRollbackOnly to test if this causes exception in TaxEditor tests. Also it looks like it should be used only in specific contexts
Andreas Müller [Fri, 23 Aug 2019 21:54:07 +0000 (23:54 +0200)]
rename rollback method
Andreas Müller [Fri, 23 Aug 2019 21:53:25 +0000 (23:53 +0200)]
cleanup
Andreas Müller [Fri, 23 Aug 2019 21:07:12 +0000 (23:07 +0200)]
add rollback to ICdmRepository and use in TaxonNodeOutStreamPartitioner
Andreas Müller [Fri, 23 Aug 2019 16:34:29 +0000 (18:34 +0200)]
cleanup
Andreas Müller [Fri, 23 Aug 2019 14:39:22 +0000 (16:39 +0200)]
cleanup
Andreas Müller [Fri, 23 Aug 2019 12:50:58 +0000 (14:50 +0200)]
ref #8180 ... and again try to fix the test data
Andreas Müller [Fri, 23 Aug 2019 12:35:21 +0000 (14:35 +0200)]
ref #8180 ... and update test data in other projects
Andreas Müller [Fri, 23 Aug 2019 12:25:05 +0000 (14:25 +0200)]
ref #8180 fix incorrect UUID in test data
Andreas Müller [Fri, 23 Aug 2019 12:07:55 +0000 (14:07 +0200)]
ref #7600 add explict adders for adder and remover methods to EntityCollectionSetterAdapter
Andreas Müller [Fri, 23 Aug 2019 12:05:28 +0000 (14:05 +0200)]
minor
Andreas Müller [Fri, 23 Aug 2019 12:04:59 +0000 (14:04 +0200)]
ref #8479 make TaxonNode.addAgentRelation public and adapt remove method name
Andreas Müller [Fri, 23 Aug 2019 12:02:28 +0000 (14:02 +0200)]
adapt CdmLightClassificationExport to hasXXX methods
Andreas Müller [Fri, 23 Aug 2019 12:01:46 +0000 (14:01 +0200)]
ref #8180 Add vocabulary to test data
Andreas Kohlbecker [Fri, 23 Aug 2019 10:59:14 +0000 (12:59 +0200)]
ref #8437 using TermType.getGeneralizationOf() to expand the termType restriction
Katja Luther [Fri, 23 Aug 2019 10:43:25 +0000 (12:43 +0200)]
add doubtful flag to TaxonNodeDto
Andreas Müller [Fri, 23 Aug 2019 09:21:11 +0000 (11:21 +0200)]
cleanup
Andreas Müller [Fri, 23 Aug 2019 09:18:46 +0000 (11:18 +0200)]
fix clone method for User
Andreas Müller [Fri, 23 Aug 2019 09:17:59 +0000 (11:17 +0200)]
ref #8180 Add Presence state vocabulary to default terms
Andreas Müller [Fri, 23 Aug 2019 09:08:28 +0000 (11:08 +0200)]
ref #8479 add hasXXX methods to TaxonNodeFilter
Andreas Müller [Fri, 23 Aug 2019 09:07:33 +0000 (11:07 +0200)]
ref #8479 make TaxonNodeOutStreamPartitioner read only by default.
Andreas Müller [Wed, 21 Aug 2019 09:46:06 +0000 (11:46 +0200)]
fix #8482 workaround fix for DescriptionType includes error
Andreas Müller [Tue, 20 Aug 2019 22:16:34 +0000 (00:16 +0200)]
minor
Katja Luther [Wed, 21 Aug 2019 07:49:52 +0000 (09:49 +0200)]
add higher Taxon search option to specimen search
Andreas Müller [Mon, 19 Aug 2019 14:47:44 +0000 (16:47 +0200)]
syntax for collective species uuid
Andreas Müller [Mon, 19 Aug 2019 14:22:57 +0000 (16:22 +0200)]
minor
Andreas Müller [Mon, 19 Aug 2019 14:19:45 +0000 (16:19 +0200)]
some minor adaptations to CdmLightExport and CsvNameExport
Andreas Müller [Mon, 19 Aug 2019 14:18:01 +0000 (16:18 +0200)]
minor
Patrick Plitzner [Mon, 19 Aug 2019 14:13:02 +0000 (16:13 +0200)]
fix #8480 Use DescriptionTypes in descriptive data set service
Katja Luther [Mon, 19 Aug 2019 07:51:36 +0000 (09:51 +0200)]
add preference predicates
Andreas Müller [Fri, 16 Aug 2019 23:02:58 +0000 (01:02 +0200)]
ref #8432 adapt javadoc
Andreas Müller [Fri, 16 Aug 2019 22:57:40 +0000 (00:57 +0200)]
ref #8432 adapt TermTreeDaoImpl.load such that default feature tree is only created and returned if the default feature tree uuid is passed to it