Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:19 +0000 (11:40 +0000)]
activating the swagger rest service documentation by reverting the revertion of the premature committed experimental branch (swagger) svn: r21387, git:
be528c1edf
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:04 +0000 (11:40 +0000)]
updating documnetation
Patric Plitzner [Fri, 23 Jan 2015 10:35:05 +0000 (10:35 +0000)]
- fixed potential NPE
Patric Plitzner [Fri, 23 Jan 2015 09:50:56 +0000 (09:50 +0000)]
- added option to specify a URI for the import report to write it to a file
Patric Plitzner [Fri, 23 Jan 2015 08:07:08 +0000 (08:07 +0000)]
- add taxon name instead of taxon for determination
- refactored taxon search
- 1. search for taxon name (create if not found)
- 2. search with taxon name for taxon (create if not found)
- added basic reporting functionality to import
Patric Plitzner [Fri, 23 Jan 2015 07:55:05 +0000 (07:55 +0000)]
- fixed typo
Andreas Müller [Fri, 23 Jan 2015 00:29:51 +0000 (00:29 +0000)]
fix NPE in findByIdentifier controller method
Andreas Müller [Thu, 22 Jan 2015 15:47:08 +0000 (15:47 +0000)]
missing persistence changes for findByIdentifier
Patric Plitzner [Thu, 22 Jan 2015 15:11:23 +0000 (15:11 +0000)]
- added two methods to find/create names and taxa
- fixed double creation of sub species
Patric Plitzner [Thu, 22 Jan 2015 15:05:54 +0000 (15:05 +0000)]
- added "else if" to avoid unnecessary checking
Andreas Müller [Thu, 22 Jan 2015 13:27:38 +0000 (13:27 +0000)]
fix findByIdentifier failing test
Andreas Müller [Thu, 22 Jan 2015 10:40:49 +0000 (10:40 +0000)]
latest changes for findByIdentifier service
Andreas Müller [Thu, 22 Jan 2015 10:27:44 +0000 (10:27 +0000)]
change methodName fix for findByIdentier service
Patric Plitzner [Thu, 22 Jan 2015 09:16:34 +0000 (09:16 +0000)]
- increased code readability
Andreas Müller [Wed, 21 Jan 2015 16:31:46 +0000 (16:31 +0000)]
improve and rename findByIdentifier service
Andreas Müller [Wed, 21 Jan 2015 15:50:52 +0000 (15:50 +0000)]
fix MatchMode.prepend bug
Patric Plitzner [Wed, 21 Jan 2015 13:12:21 +0000 (13:12 +0000)]
- added parameter for each deduplication (references, classifications)
Patric Plitzner [Wed, 21 Jan 2015 13:08:14 +0000 (13:08 +0000)]
- added ABCD import paramater "skipDeduplication"
Patric Plitzner [Wed, 21 Jan 2015 09:25:57 +0000 (09:25 +0000)]
- avoid duplicating the default "ABCD classic" reference for every single imported unit
Cherian Mathew [Mon, 19 Jan 2015 15:33:52 +0000 (15:33 +0000)]
removed vaadin webapp dirs
Cherian Mathew [Mon, 19 Jan 2015 15:29:19 +0000 (15:29 +0000)]
removed vaadin references
Cherian Mathew [Mon, 19 Jan 2015 15:23:16 +0000 (15:23 +0000)]
removed references to vaadin and updated servlet scope to provided
Cherian Mathew [Mon, 19 Jan 2015 15:19:34 +0000 (15:19 +0000)]
pom.xml : added maven dependency goal to unpack the corresponding cdm-vaadin war into a directory in the target dir and added this directory as a resource when building the cdmlib-remote-webapp war
pom.xml, applicationContext.xml, cdmlib-remote-servlet.xml, web.xml, SpringMVCConfig.java : removed references to Vaadin
jetty.xml : changed configuration to be compatible with jetty 9
cdmlib-remote-servlet : added profile to switch on / off remoting depending on vm argument
src/main/webapp/VAADIN : removed vaadin webapp dir
Cherian Mathew [Mon, 19 Jan 2015 14:49:47 +0000 (14:49 +0000)]
removed references to vaadin in pom file
removed vaadin classes as they have been migrated to cdm-vaadin project
Andreas Müller [Mon, 19 Jan 2015 13:24:05 +0000 (13:24 +0000)]
remove some javadocs
Patric Plitzner [Fri, 16 Jan 2015 15:14:42 +0000 (15:14 +0000)]
- added gathering date and elevation to ABCD import
Patric Plitzner [Fri, 16 Jan 2015 10:03:50 +0000 (10:03 +0000)]
- use classification uuid to load classification if it exists in the data source
Patric Plitzner [Fri, 16 Jan 2015 08:17:30 +0000 (08:17 +0000)]
- cleaned up code
Patric Plitzner [Thu, 15 Jan 2015 15:07:00 +0000 (15:07 +0000)]
- refactored getFieldUnits()
Patric Plitzner [Thu, 15 Jan 2015 13:21:21 +0000 (13:21 +0000)]
- added null check and host check to avoid exceptions (fixes #4587)
Andreas Müller [Mon, 12 Jan 2015 15:04:34 +0000 (15:04 +0000)]
add transactional to listByIdentifier service
Alexander Oppermann [Mon, 12 Jan 2015 14:17:28 +0000 (14:17 +0000)]
fixed required parameter setting
Alexander Oppermann [Mon, 12 Jan 2015 13:46:20 +0000 (13:46 +0000)]
Implemented REST Controller for listByIdentifier service method
Andreas Müller [Fri, 9 Jan 2015 14:23:06 +0000 (14:23 +0000)]
remove imports
Andreas Müller [Fri, 9 Jan 2015 13:48:11 +0000 (13:48 +0000)]
minor
Andreas Müller [Fri, 9 Jan 2015 12:54:19 +0000 (12:54 +0000)]
switch on IPNI tests
Andreas Müller [Thu, 8 Jan 2015 21:40:04 +0000 (21:40 +0000)]
switch off validation
Andreas Müller [Thu, 8 Jan 2015 16:03:29 +0000 (16:03 +0000)]
adding ISelfDescriptive from validation branch
Andreas Müller [Thu, 8 Jan 2015 15:43:18 +0000 (15:43 +0000)]
rename abstract class
Andreas Müller [Thu, 8 Jan 2015 15:40:37 +0000 (15:40 +0000)]
rename abstract class
Andreas Müller [Thu, 8 Jan 2015 15:36:39 +0000 (15:36 +0000)]
merge cdmlib-persistence from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:34:16 +0000 (15:34 +0000)]
merge cdmlib-service from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:30:39 +0000 (15:30 +0000)]
merge cdmlib-remote from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:30:11 +0000 (15:30 +0000)]
merge cdmlib-print from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:29:28 +0000 (15:29 +0000)]
merge cdmlib-io from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:28:33 +0000 (15:28 +0000)]
merge cdmlib-ext from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:27:29 +0000 (15:27 +0000)]
merge cdmlib-commons from validatioin to branch
Andreas Müller [Thu, 8 Jan 2015 15:01:49 +0000 (15:01 +0000)]
remove imports
Andreas Müller [Thu, 8 Jan 2015 14:59:44 +0000 (14:59 +0000)]
correct logger info
Andreas Müller [Thu, 8 Jan 2015 14:30:08 +0000 (14:30 +0000)]
VocEnum
Andreas Müller [Thu, 8 Jan 2015 11:27:09 +0000 (11:27 +0000)]
minor
Andreas Müller [Thu, 8 Jan 2015 10:46:19 +0000 (10:46 +0000)]
first tests for listByIdentifier
Andreas Müller [Wed, 7 Jan 2015 23:21:44 +0000 (23:21 +0000)]
remove imports
Andreas Müller [Wed, 7 Jan 2015 18:45:26 +0000 (18:45 +0000)]
factory method for Identifier Type
Andreas Müller [Wed, 7 Jan 2015 18:44:54 +0000 (18:44 +0000)]
labels for some TermTypes
Andreas Müller [Wed, 7 Jan 2015 18:36:27 +0000 (18:36 +0000)]
first untested version for findByIdentifier #4594
Andreas Müller [Wed, 7 Jan 2015 17:57:49 +0000 (17:57 +0000)]
update javadoc and Override in IdentifiableServiceBase
Katja Luther [Tue, 6 Jan 2015 12:33:37 +0000 (12:33 +0000)]
Andreas Müller [Tue, 6 Jan 2015 12:21:10 +0000 (12:21 +0000)]
avoid NPE in ImageInfo loading #4587
Andreas Müller [Wed, 17 Dec 2014 15:20:19 +0000 (15:20 +0000)]
minor
Andreas Müller [Wed, 17 Dec 2014 12:46:53 +0000 (12:46 +0000)]
add getter and setter for reverse complement
Andreas Müller [Wed, 17 Dec 2014 12:13:04 +0000 (12:13 +0000)]
minor
Andreas Müller [Tue, 16 Dec 2014 20:29:34 +0000 (20:29 +0000)]
add xslx test in io
Andreas Müller [Tue, 16 Dec 2014 20:05:44 +0000 (20:05 +0000)]
minor
Patric Plitzner [Tue, 16 Dec 2014 14:16:58 +0000 (14:16 +0000)]
- added comment
Patric Plitzner [Tue, 16 Dec 2014 14:11:19 +0000 (14:11 +0000)]
- fixed deep delete recursion bug
- fixed tests
Patric Plitzner [Tue, 16 Dec 2014 09:32:37 +0000 (09:32 +0000)]
- extracted deepDelete tests to own java class
- reduced exception logged in DeleteResult
Andreas Kohlbecker [Mon, 15 Dec 2014 21:19:23 +0000 (21:19 +0000)]
disabling dependencyLocationsEnabled option of the maven-project-info-reports-plugin to speed up site building
Andreas Müller [Mon, 15 Dec 2014 17:25:26 +0000 (17:25 +0000)]
refactor validation classes
Andreas Müller [Mon, 15 Dec 2014 16:58:22 +0000 (16:58 +0000)]
minor
Andreas Kohlbecker [Mon, 15 Dec 2014 14:46:42 +0000 (14:46 +0000)]
site-delpoy chmod = false
Andreas Müller [Mon, 15 Dec 2014 12:52:10 +0000 (12:52 +0000)]
add original label info to specimen facade #4218, #4565
edit-jenkins [Mon, 15 Dec 2014 12:46:14 +0000 (12:46 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Mon, 15 Dec 2014 12:46:09 +0000 (12:46 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.4.0
Patric Plitzner [Mon, 15 Dec 2014 12:00:37 +0000 (12:00 +0000)]
- fully implemented deep delete (child derivates)
- added tests
Andreas Müller [Mon, 15 Dec 2014 11:46:09 +0000 (11:46 +0000)]
minor
Andreas Müller [Mon, 15 Dec 2014 11:29:32 +0000 (11:29 +0000)]
add username, groupname and GrantedAuthority deduplication #4102
Andreas Kohlbecker [Mon, 15 Dec 2014 10:26:07 +0000 (10:26 +0000)]
turning java code level back to 1.6 to investigate existing problems
Andreas Kohlbecker [Mon, 15 Dec 2014 10:22:05 +0000 (10:22 +0000)]
more logging output
Andreas Kohlbecker [Mon, 15 Dec 2014 10:21:57 +0000 (10:21 +0000)]
typo
Andreas Müller [Fri, 12 Dec 2014 16:47:09 +0000 (16:47 +0000)]
add poi-ooxml and upgrade to 3.10-FINAL
Andreas Müller [Fri, 12 Dec 2014 15:50:45 +0000 (15:50 +0000)]
minor
Andreas Müller [Fri, 12 Dec 2014 15:25:16 +0000 (15:25 +0000)]
javadoc for Amplification and AmplificationResult
Andreas Müller [Fri, 12 Dec 2014 14:59:26 +0000 (14:59 +0000)]
minor
Andreas Müller [Fri, 12 Dec 2014 13:17:42 +0000 (13:17 +0000)]
added unit test for derived unit facade with parent but no field unit #4532
Patric Plitzner [Fri, 12 Dec 2014 08:41:39 +0000 (08:41 +0000)]
- implemented isDeletable() and delete()
- fixed test XML files and tests
Andreas Müller [Thu, 11 Dec 2014 23:50:24 +0000 (23:50 +0000)]
fix Occurrence test
Patric Plitzner [Thu, 11 Dec 2014 20:35:55 +0000 (20:35 +0000)]
- added isDeleteMolecularData flag to configurator
Patric Plitzner [Thu, 11 Dec 2014 20:35:04 +0000 (20:35 +0000)]
- use labelCache instead of description for amplification labeling
Patric Plitzner [Thu, 11 Dec 2014 20:34:10 +0000 (20:34 +0000)]
- change visibility of createTestDataSet to public
Patric Plitzner [Thu, 11 Dec 2014 20:32:35 +0000 (20:32 +0000)]
- change visibility of createTestDataSet to public
Andreas Müller [Thu, 11 Dec 2014 15:29:15 +0000 (15:29 +0000)]
test for Amplification labelCache
Patric Plitzner [Thu, 11 Dec 2014 15:07:52 +0000 (15:07 +0000)]
- organized imports
Andreas Müller [Thu, 11 Dec 2014 15:02:30 +0000 (15:02 +0000)]
implement Amplification.labelCache generation
Patric Plitzner [Thu, 11 Dec 2014 14:51:04 +0000 (14:51 +0000)]
- added cascade saving for amplification result
- made constructor protected to avoid JavaAssistEnhancementException
Andreas Müller [Thu, 11 Dec 2014 14:30:45 +0000 (14:30 +0000)]
doc
Andreas Müller [Thu, 11 Dec 2014 14:29:11 +0000 (14:29 +0000)]
handle duplicates in identifier list
Andreas Müller [Thu, 11 Dec 2014 12:44:01 +0000 (12:44 +0000)]
minor
Andreas Müller [Thu, 11 Dec 2014 12:39:59 +0000 (12:39 +0000)]
updated webapp h2 test database
Andreas Müller [Wed, 10 Dec 2014 23:11:31 +0000 (23:11 +0000)]
minor