cdmlib.git
10 years agoupdate poms to 3.4
Andreas Müller [Tue, 17 Jun 2014 14:39:25 +0000 (14:39 +0000)]
update poms to 3.4

10 years agoCreate cdmlib 3.4 branch
Andreas Müller [Mon, 16 Jun 2014 10:20:49 +0000 (10:20 +0000)]
Create cdmlib 3.4 branch

10 years ago - added functionality to filter assigned specimens in the DerivateSearchView (fixes...
Patric Plitzner [Mon, 16 Jun 2014 08:57:24 +0000 (08:57 +0000)]
 - added functionality to filter assigned specimens in the DerivateSearchView (fixes #4252)

10 years agofixing failing security test due to stricter handling of correct sort index
Andreas Müller [Sun, 15 Jun 2014 10:09:54 +0000 (10:09 +0000)]
fixing failing security test due to stricter handling of correct sort index

10 years agominor
Andreas Müller [Fri, 13 Jun 2014 13:32:02 +0000 (13:32 +0000)]
minor

10 years agosome java doc
Andreas Müller [Fri, 13 Jun 2014 10:02:26 +0000 (10:02 +0000)]
some java doc

10 years agostart bugfixing and refactoring sortindex handling in TaxonNode
Andreas Müller [Fri, 13 Jun 2014 09:46:45 +0000 (09:46 +0000)]
start bugfixing and refactoring sortindex handling in TaxonNode

10 years ago - added null check
Patric Plitzner [Wed, 11 Jun 2014 14:22:41 +0000 (14:22 +0000)]
 - added null check

10 years ago - added service method to term service that retrieves terms by TermType
Patric Plitzner [Tue, 10 Jun 2014 11:46:10 +0000 (11:46 +0000)]
 - added service method to term service that retrieves terms by TermType

10 years agolatest changes to taxonX import
Andreas Müller [Tue, 10 Jun 2014 09:52:56 +0000 (09:52 +0000)]
latest changes to taxonX import

10 years agoupdates to taxonX import
Andreas Müller [Sat, 7 Jun 2014 21:00:38 +0000 (21:00 +0000)]
updates to taxonX import

10 years agoallow zoonames with year behind whitespace, not comma
Andreas Müller [Sat, 7 Jun 2014 13:45:40 +0000 (13:45 +0000)]
allow zoonames with year behind whitespace, not comma

10 years agoremove deprecated method
Andreas Müller [Fri, 6 Jun 2014 20:58:06 +0000 (20:58 +0000)]
remove deprecated method

10 years agolatest updates to taxonX import
Andreas Müller [Fri, 6 Jun 2014 20:52:45 +0000 (20:52 +0000)]
latest updates to taxonX import

10 years agobetter handling of countries in gathering unit
Andreas Müller [Fri, 6 Jun 2014 20:52:11 +0000 (20:52 +0000)]
better handling of countries in gathering unit

10 years agoremove generate title
Andreas Müller [Fri, 6 Jun 2014 20:48:58 +0000 (20:48 +0000)]
remove generate title

10 years agominor
Andreas Müller [Fri, 6 Jun 2014 20:47:29 +0000 (20:47 +0000)]
minor

10 years agoremove deprecated method
Andreas Müller [Fri, 6 Jun 2014 20:45:24 +0000 (20:45 +0000)]
remove deprecated method

10 years agofix matching for Integer #4229
Andreas Müller [Fri, 6 Jun 2014 13:55:30 +0000 (13:55 +0000)]
fix matching for Integer  #4229

10 years agolatest changes to TaxonX import
Andreas Müller [Thu, 5 Jun 2014 14:03:27 +0000 (14:03 +0000)]
latest changes to TaxonX import

10 years agominor
Andreas Müller [Thu, 5 Jun 2014 12:19:06 +0000 (12:19 +0000)]
minor

10 years agofix "Error occurred when trying retrieve title for Named Area"
Andreas Müller [Tue, 3 Jun 2014 16:09:16 +0000 (16:09 +0000)]
fix "Error occurred when trying retrieve title for Named Area"

10 years agolatest changes to taxonX import
Andreas Müller [Tue, 3 Jun 2014 15:25:50 +0000 (15:25 +0000)]
latest changes to taxonX import

10 years agominor
Andreas Müller [Tue, 3 Jun 2014 14:41:33 +0000 (14:41 +0000)]
minor

10 years ago - made constructor protected to avoid JavaAssistEnhancementException (see https...
Patric Plitzner [Tue, 3 Jun 2014 14:35:08 +0000 (14:35 +0000)]
 - made constructor protected to avoid JavaAssistEnhancementException (see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception)

10 years ago - fixed documentation
Patric Plitzner [Tue, 3 Jun 2014 14:33:00 +0000 (14:33 +0000)]
 - fixed documentation

10 years ago - deleted invalid assert statement
Patric Plitzner [Tue, 3 Jun 2014 06:38:13 +0000 (06:38 +0000)]
 - deleted invalid assert statement

10 years agofix for TaxonComparatorSearch
Andreas Müller [Mon, 2 Jun 2014 16:53:25 +0000 (16:53 +0000)]
fix for TaxonComparatorSearch

10 years ago - completed implementation of querying for the original unit from a GBIF response
Patric Plitzner [Mon, 2 Jun 2014 13:51:04 +0000 (13:51 +0000)]
 - completed implementation of querying for the original unit from a GBIF response

10 years ago - added service methods for querying original record via BioCASE if found in GBIF...
Patric Plitzner [Mon, 2 Jun 2014 09:41:52 +0000 (09:41 +0000)]
 - added service methods for querying original record via BioCASE if found in GBIF response

10 years agocorrected query to taxonUuid
Cherian Mathew [Fri, 30 May 2014 10:35:45 +0000 (10:35 +0000)]
corrected query to taxonUuid

10 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Fri, 30 May 2014 07:56:35 +0000 (07:56 +0000)]
[maven-release-plugin] prepare for next development iteration

10 years ago[maven-release-plugin] prepare release cdmlib-parent-3.3.5
edit-jenkins [Fri, 30 May 2014 07:56:31 +0000 (07:56 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.3.5

10 years agoset sorting in getChildNodes optional & minor for delete in bulk editor
Katja Luther [Thu, 29 May 2014 20:47:01 +0000 (20:47 +0000)]
set sorting in getChildNodes optional & minor for delete in bulk editor

10 years agoimprove to better fulfill the Comparator contract
Andreas Müller [Wed, 28 May 2014 23:34:22 +0000 (23:34 +0000)]
improve to better fulfill the Comparator contract

10 years agoimprove to better fulfill the Comparator contract
Andreas Müller [Wed, 28 May 2014 23:21:21 +0000 (23:21 +0000)]
improve to better fulfill the Comparator contract

10 years agoimprove TaxonComparator to better fulfill the general Comparator contract.
Andreas Müller [Wed, 28 May 2014 23:10:15 +0000 (23:10 +0000)]
improve TaxonComparator to better fulfill the general Comparator contract.

10 years agofurther improve comparator contract implementation for TaxonComparatorSearch #4230
Andreas Müller [Wed, 28 May 2014 22:35:08 +0000 (22:35 +0000)]
further improve comparator contract implementation for TaxonComparatorSearch  #4230

10 years agoremove logging
Andreas Müller [Wed, 28 May 2014 17:46:38 +0000 (17:46 +0000)]
remove logging

10 years agofixing #4230, comparison issue
Andreas Müller [Wed, 28 May 2014 17:45:57 +0000 (17:45 +0000)]
fixing #4230, comparison issue

10 years ago - extended GbifResponse and BioCase services to query for a single record with a...
Patric Plitzner [Wed, 28 May 2014 14:09:53 +0000 (14:09 +0000)]
 - extended GbifResponse and BioCase services to query for a single record with a specific unitID

10 years ago - added workaround for year range queries because GBIF does not yet support eventDat...
Patric Plitzner [Wed, 28 May 2014 09:17:27 +0000 (09:17 +0000)]
 - added workaround for year range queries because GBIF does not yet support eventDate as query parameter

10 years ago - commented failing test
Patric Plitzner [Wed, 28 May 2014 09:12:14 +0000 (09:12 +0000)]
 - commented failing test

10 years ago - added class GbifRespone which wraps one DerivedUnit returned of the parsed GBIF...
Patric Plitzner [Wed, 28 May 2014 08:56:29 +0000 (08:56 +0000)]
 - added class GbifRespone which wraps one DerivedUnit returned of the parsed GBIF JSON response and the datasetKey to retrieve the original record

10 years agofix all protected title caches
Andreas Müller [Tue, 27 May 2014 15:41:19 +0000 (15:41 +0000)]
fix all protected title caches

10 years agoadded occurrence search to main rest api page
Cherian Mathew [Tue, 27 May 2014 13:46:49 +0000 (13:46 +0000)]
added occurrence search to main rest api page

10 years agoOccurrenceCatalogueController : added check for uuid corresponding to accepted taxon
Cherian Mathew [Tue, 27 May 2014 10:31:55 +0000 (10:31 +0000)]
OccurrenceCatalogueController : added check for uuid corresponding to accepted taxon
OccurrenceSearch : updated terms to be consistent
occurrence-catalogue-default : updated doc

10 years ago - commented failing test
Patric Plitzner [Tue, 27 May 2014 09:17:28 +0000 (09:17 +0000)]
 - commented failing test

10 years ago - extended test
Patric Plitzner [Tue, 27 May 2014 08:23:28 +0000 (08:23 +0000)]
 - extended test
 - added workaround for commas in URL
 - fixed parameter checking

10 years ago - added limit to GBIF query
Patric Plitzner [Mon, 26 May 2014 15:07:36 +0000 (15:07 +0000)]
 - added limit to GBIF query
 - added date format for date parameter
 - added missing parameters for GBIF query

10 years ago - implemented JSON parse logic for GBIF responses
Patric Plitzner [Mon, 26 May 2014 10:32:25 +0000 (10:32 +0000)]
 - implemented JSON parse logic for GBIF responses
  - DerivedUnitFacades are created from the parsed results
 - implemented/adapted test

10 years agoadded missing import
Cherian Mathew [Fri, 23 May 2014 15:48:29 +0000 (15:48 +0000)]
added missing import

10 years agoDerivedUnitFacade : added getRights method
Cherian Mathew [Fri, 23 May 2014 15:47:38 +0000 (15:47 +0000)]
DerivedUnitFacade : added getRights method
OccurrenceCatalogueController : maintenance , clean up and added sources and rights to the init facade strategy
OccurrenceSearch : reverted back code for specimen related information

10 years agoupdated controller and search to optimise the code for retrieving all occurrences.
Cherian Mathew [Fri, 23 May 2014 08:00:24 +0000 (08:00 +0000)]
updated controller and search to optimise the code for retrieving all occurrences.
added apt doc for endpoint

10 years ago - added dateFrom and dateTo to OccurrenceQuery
Patric Plitzner [Thu, 22 May 2014 14:08:18 +0000 (14:08 +0000)]
 - added dateFrom and dateTo to OccurrenceQuery

10 years agoAdded new documentation for checklist controller and endpoints
Alexander Oppermann [Thu, 22 May 2014 11:33:16 +0000 (11:33 +0000)]
Added new documentation for checklist controller and endpoints

10 years agominor fixes for the checklist controller, now each endpoint can have a different...
Alexander Oppermann [Thu, 22 May 2014 11:30:31 +0000 (11:30 +0000)]
minor fixes for the checklist controller, now each endpoint can have a different documentation resource

10 years agoChanged project scpecific naming to a more generic one.
Alexander Oppermann [Thu, 22 May 2014 11:25:54 +0000 (11:25 +0000)]
Changed project scpecific naming to a more generic one.

10 years agoChanged project scpecific naming to a more generic one.
Alexander Oppermann [Thu, 22 May 2014 11:24:42 +0000 (11:24 +0000)]
Changed project scpecific naming to a more generic one.

10 years agoChanged project scpecific naming to a more generic one.
Alexander Oppermann [Thu, 22 May 2014 11:08:03 +0000 (11:08 +0000)]
Changed project scpecific naming to a more generic one.

10 years agoChanged project scpecific naming to a more generic one.
Alexander Oppermann [Thu, 22 May 2014 11:01:47 +0000 (11:01 +0000)]
Changed project scpecific naming to a more generic one.

10 years agominor
Andreas Müller [Wed, 21 May 2014 14:44:50 +0000 (14:44 +0000)]
minor

10 years ago - do not add query parameters for emtpy strings
Patric Plitzner [Wed, 21 May 2014 14:05:41 +0000 (14:05 +0000)]
 - do not add query parameters for emtpy strings

10 years agoadd size to includedTaxaDTO
Andreas Müller [Wed, 21 May 2014 13:22:10 +0000 (13:22 +0000)]
add size to includedTaxaDTO

10 years agoAdded new Service Endpoint [cdmserverURL]/checklist/flockSearch for the new flockSear...
Alexander Oppermann [Wed, 21 May 2014 12:17:17 +0000 (12:17 +0000)]
Added new Service Endpoint [cdmserverURL]/checklist/flockSearch for the new flockSearch webService

10 years agouse doubtful parameter in included taxon service
Andreas Müller [Wed, 21 May 2014 12:16:53 +0000 (12:16 +0000)]
use doubtful parameter in included taxon service

10 years agouse doubtful parameter in included taxon service
Andreas Müller [Wed, 21 May 2014 10:41:40 +0000 (10:41 +0000)]
use doubtful parameter in included taxon service

10 years agosetting url when database, server or port update instead of when updating datasource...
Cherian Mathew [Wed, 21 May 2014 10:25:06 +0000 (10:25 +0000)]
setting url when database, server or port update instead of when updating datasource bean.

10 years agoincluded skeleton for flockSearch
Alexander Oppermann [Wed, 21 May 2014 09:22:43 +0000 (09:22 +0000)]
included skeleton for flockSearch

10 years agoupdating connection url for data source bean
Cherian Mathew [Wed, 21 May 2014 07:57:39 +0000 (07:57 +0000)]
updating connection url for data source bean

10 years ago - added gbif external service for querying GBIF
Patric Plitzner [Wed, 21 May 2014 07:40:58 +0000 (07:40 +0000)]
 - added gbif external service for querying GBIF
 - added gbif and biocase service to new package
 - added temporary test

10 years agoupdate listIncludedTaxa #4045
Andreas Müller [Tue, 20 May 2014 16:50:59 +0000 (16:50 +0000)]
update listIncludedTaxa #4045

10 years agoimplement listIncludedTaxa first version #4045
Andreas Müller [Tue, 20 May 2014 16:18:28 +0000 (16:18 +0000)]
implement listIncludedTaxa first version  #4045

10 years agominor
Andreas Müller [Tue, 20 May 2014 10:13:44 +0000 (10:13 +0000)]
minor

10 years agobetter use of generics in service layer and persistence list methods
Andreas Müller [Tue, 20 May 2014 10:11:08 +0000 (10:11 +0000)]
better use of generics in service layer and persistence list methods

10 years agoremove deprecated method (cont.)
Andreas Müller [Tue, 20 May 2014 09:33:06 +0000 (09:33 +0000)]
remove deprecated method (cont.)

10 years agoadd description for loadChildNodesOfTaxonNode
Katja Luther [Tue, 20 May 2014 09:20:33 +0000 (09:20 +0000)]
add description for loadChildNodesOfTaxonNode

10 years agoremove deprecated method
Andreas Müller [Tue, 20 May 2014 09:16:30 +0000 (09:16 +0000)]
remove deprecated method

10 years agominor
Andreas Müller [Tue, 20 May 2014 09:10:30 +0000 (09:10 +0000)]
minor

10 years agoupdates to Tcs import
Andreas Müller [Tue, 20 May 2014 09:05:22 +0000 (09:05 +0000)]
updates to Tcs import

10 years agoimprove includeAllSubareas
Andreas Müller [Fri, 16 May 2014 12:13:54 +0000 (12:13 +0000)]
improve includeAllSubareas

10 years agominor
Andreas Müller [Fri, 16 May 2014 12:10:34 +0000 (12:10 +0000)]
minor

10 years agonull handling for taxon names in nomSortOrderBrdige
Andreas Müller [Fri, 16 May 2014 12:10:00 +0000 (12:10 +0000)]
null handling for taxon names in nomSortOrderBrdige

10 years agopreliminary FK test
Andreas Müller [Fri, 16 May 2014 11:48:16 +0000 (11:48 +0000)]
preliminary FK test

10 years agoserial Version ID for HomGroup
Andreas Müller [Thu, 15 May 2014 16:22:27 +0000 (16:22 +0000)]
serial Version ID for HomGroup

10 years agohandle null objects for save, saveOrUpdate and Update
Andreas Müller [Thu, 15 May 2014 16:03:11 +0000 (16:03 +0000)]
handle null objects for save, saveOrUpdate and Update

10 years agofurther fixes for subareas #4220
Andreas Müller [Thu, 15 May 2014 11:44:12 +0000 (11:44 +0000)]
further fixes for subareas  #4220

10 years agoadd getKindOfUnit in import base
Andreas Müller [Thu, 15 May 2014 11:41:03 +0000 (11:41 +0000)]
add getKindOfUnit in import base

10 years agobetter handling NewInstance in DerivedUnit
Andreas Müller [Thu, 15 May 2014 11:39:49 +0000 (11:39 +0000)]
better handling NewInstance in DerivedUnit

10 years agominor
Andreas Müller [Thu, 15 May 2014 11:36:08 +0000 (11:36 +0000)]
minor

10 years agoset getDescendants back to protected, remove @transient
Katja Luther [Thu, 15 May 2014 10:58:01 +0000 (10:58 +0000)]
set getDescendants back to protected, remove @transient

10 years agoadapt the service method loadChildNodesOfTaxonNode
Katja Luther [Thu, 15 May 2014 09:35:22 +0000 (09:35 +0000)]
adapt the service method loadChildNodesOfTaxonNode
with param recursive choose whether you get only the children of the node or the children of the children ...

10 years agofix CCE in TaxonListController #4420
Andreas Müller [Wed, 14 May 2014 15:38:39 +0000 (15:38 +0000)]
fix CCE in TaxonListController #4420

10 years agoadding transient annotaion so that it is ignored in serializing
Cherian Mathew [Wed, 14 May 2014 09:42:53 +0000 (09:42 +0000)]
adding transient annotaion so that it is ignored in serializing

10 years ago - made move methods session-safe by reloading the cdm entities
Patric Plitzner [Wed, 14 May 2014 08:08:34 +0000 (08:08 +0000)]
 - made move methods session-safe by reloading the cdm entities
 - enhanced/added test

10 years ago - made move methods session-safe by reloading the cdm entities
Patric Plitzner [Wed, 14 May 2014 07:15:41 +0000 (07:15 +0000)]
 - made move methods session-safe by reloading the cdm entities
 - enhanced/added test
 - made constructor of PreservationMethod protected to avoid JavaAssistEnhancementException

10 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Tue, 13 May 2014 14:10:11 +0000 (14:10 +0000)]
[maven-release-plugin] prepare for next development iteration

10 years ago[maven-release-plugin] prepare release cdmlib-parent-3.3.4
edit-jenkins [Tue, 13 May 2014 14:10:08 +0000 (14:10 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.3.4

10 years agoset getDescendants() public
Katja Luther [Tue, 13 May 2014 10:44:42 +0000 (10:44 +0000)]
set getDescendants() public

10 years agomoved the basic implementation of isDeletable from IdentifiableServiceBase to Version...
Katja Luther [Mon, 12 May 2014 10:52:55 +0000 (10:52 +0000)]
moved the basic implementation of isDeletable from IdentifiableServiceBase to VersionableServiceBase