Andreas Müller [Fri, 18 Dec 2020 19:37:14 +0000 (20:37 +0100)]
ref #9349 fix test for nomenclaturalStatus in name cloning
Andreas Müller [Fri, 18 Dec 2020 19:20:38 +0000 (20:20 +0100)]
ref #9349 deprecate setReuseNames(false)
Andreas Müller [Fri, 18 Dec 2020 19:19:53 +0000 (20:19 +0100)]
ref #9349 move cloneSubtree to taxonNodeService
Andreas Müller [Fri, 18 Dec 2020 19:18:37 +0000 (20:18 +0100)]
remove deprecated methods from classificationService
Andreas Müller [Fri, 18 Dec 2020 19:15:53 +0000 (20:15 +0100)]
cleanup
Andreas Müller [Fri, 18 Dec 2020 18:03:46 +0000 (19:03 +0100)]
ref #9349 improve name cloning (including documentation as name cloning is not straight forward)
Andreas Müller [Fri, 18 Dec 2020 11:02:08 +0000 (12:02 +0100)]
cleanup
Andreas Müller [Fri, 18 Dec 2020 11:01:17 +0000 (12:01 +0100)]
move model comparators to own package
Katja Luther [Fri, 18 Dec 2020 10:24:40 +0000 (11:24 +0100)]
ref #9142: use clazz for FROM statement in getUuidAndAbbrevTitleCache for agents
Katja Luther [Fri, 18 Dec 2020 09:50:20 +0000 (10:50 +0100)]
ref #9142: fix getUuidAndAbbrevTitleCache for agents
Katja Luther [Mon, 14 Dec 2020 09:44:04 +0000 (10:44 +0100)]
fix import of dna data with different provider software version
Katja Luther [Mon, 7 Dec 2020 10:55:26 +0000 (11:55 +0100)]
fix missing publish flag in createTaxonnode
Andreas Müller [Sat, 5 Dec 2020 10:13:41 +0000 (11:13 +0100)]
cleanup
Andreas Müller [Sat, 5 Dec 2020 10:13:24 +0000 (11:13 +0100)]
remmove potential NPE in TermNode.toString
Andreas Müller [Sat, 5 Dec 2020 09:55:51 +0000 (10:55 +0100)]
cleanup
jenkins [Thu, 3 Dec 2020 18:33:26 +0000 (19:33 +0100)]
Updating develop poms back to pre merge state
jenkins [Thu, 3 Dec 2020 18:33:25 +0000 (19:33 +0100)]
Merge branch 'master' into develop
jenkins [Thu, 3 Dec 2020 18:33:24 +0000 (19:33 +0100)]
updating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 3 Dec 2020 18:33:19 +0000 (19:33 +0100)]
Merge branch 'release/5.18.0'
jenkins [Thu, 3 Dec 2020 18:11:17 +0000 (19:11 +0100)]
updating poms for branch'release/5.18.0' with non-snapshot versions
jenkins [Thu, 3 Dec 2020 17:20:04 +0000 (18:20 +0100)]
updating poms for 5.19.0-SNAPSHOT development
jenkins [Thu, 3 Dec 2020 17:20:03 +0000 (18:20 +0100)]
updating poms for 5.18.0 branch with snapshot versions
Andreas Müller [Thu, 3 Dec 2020 16:45:57 +0000 (17:45 +0100)]
ref #8547 add inreference type for Proceedings
Andreas Müller [Thu, 3 Dec 2020 16:45:11 +0000 (17:45 +0100)]
throw exception when datasource could not be saved (instead of logging only)
Andreas Müller [Thu, 3 Dec 2020 16:44:38 +0000 (17:44 +0100)]
cleanup
Andreas Müller [Thu, 3 Dec 2020 13:23:37 +0000 (14:23 +0100)]
ref #8547 make ReferenceType.inReferenceContraints() a list
Andreas Müller [Wed, 2 Dec 2020 17:22:21 +0000 (18:22 +0100)]
ref #6591 handle also AUD table in SingleTermRemover for removing original spelling
Andreas Müller [Wed, 2 Dec 2020 17:21:11 +0000 (18:21 +0100)]
cleanup
Andreas Müller [Wed, 2 Dec 2020 17:20:05 +0000 (18:20 +0100)]
ref #9322 handle also AUD table in SingleTermRemover and connect the schema updater
Andreas Müller [Wed, 2 Dec 2020 15:52:21 +0000 (16:52 +0100)]
cleanup
Andreas Müller [Wed, 2 Dec 2020 15:45:16 +0000 (16:45 +0100)]
move country methods to term service and some cleanup
Andreas Müller [Wed, 2 Dec 2020 15:12:19 +0000 (16:12 +0100)]
ref #9228 , ref #4866 some fixes for subtree cloning
Andreas Müller [Wed, 2 Dec 2020 13:45:31 +0000 (14:45 +0100)]
cleanup
Katja Luther [Wed, 2 Dec 2020 14:02:33 +0000 (15:02 +0100)]
ref #9267: set sec of new taxon to sec of synonym
Andreas Müller [Tue, 1 Dec 2020 19:06:27 +0000 (20:06 +0100)]
ref #4866, ref #9228 try to fix further test in suite
Andreas Müller [Tue, 1 Dec 2020 19:01:36 +0000 (20:01 +0100)]
cleanup
Andreas Müller [Tue, 1 Dec 2020 19:01:24 +0000 (20:01 +0100)]
ref #4866, ref #9228 try to fix NameServiceImplTest in suite
Andreas Müller [Tue, 1 Dec 2020 18:45:38 +0000 (19:45 +0100)]
ref #4866, ref #9228 add references for test
Andreas Müller [Tue, 1 Dec 2020 18:28:10 +0000 (19:28 +0100)]
ref #4866, ref #9228 fix test and use referenceDao instead of refService internally
Andreas Müller [Tue, 1 Dec 2020 18:19:41 +0000 (19:19 +0100)]
ref #4866, ref #9228 implement subtree clone (cont., fix taxon cloning)
Andreas Müller [Tue, 1 Dec 2020 17:57:13 +0000 (18:57 +0100)]
cleanup
Andreas Müller [Tue, 1 Dec 2020 17:33:45 +0000 (18:33 +0100)]
ref #4866, ref #9228 implement subtree clone
Andreas Kohlbecker [Tue, 1 Dec 2020 14:41:01 +0000 (15:41 +0100)]
fix #8458 documenting FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
Andreas Kohlbecker [Tue, 1 Dec 2020 13:13:02 +0000 (14:13 +0100)]
ref #8851 extednding init strategy for name descriptions by sources and annotations
Andreas Müller [Tue, 1 Dec 2020 12:45:43 +0000 (13:45 +0100)]
ref #9204 upgrade postgresql driver to latest version
Andreas Müller [Tue, 1 Dec 2020 12:37:38 +0000 (13:37 +0100)]
move mchange-commons-java version to parent pom
Andreas Müller [Tue, 1 Dec 2020 12:28:27 +0000 (13:28 +0100)]
ref #4866, ref #9228 implement subtree clone in branch
Katja Luther [Mon, 30 Nov 2020 14:40:59 +0000 (15:40 +0100)]
ref #8774: save term tree titleCache
Katja Luther [Mon, 30 Nov 2020 12:39:15 +0000 (13:39 +0100)]
ref #9103: add handling of classifications in TaxonnodeDto - continue
Katja Luther [Mon, 30 Nov 2020 12:08:56 +0000 (13:08 +0100)]
ref #9103: add handling of classifications in TaxonnodeDto
Andreas Kohlbecker [Mon, 30 Nov 2020 11:09:05 +0000 (12:09 +0100)]
ref #9103 adding missing null check
Andreas Müller [Mon, 30 Nov 2020 11:00:12 +0000 (12:00 +0100)]
cleanup
Andreas Müller [Mon, 30 Nov 2020 10:33:52 +0000 (11:33 +0100)]
Adapt javadoc for TypeDesignationBase
Katja Luther [Mon, 30 Nov 2020 09:59:14 +0000 (10:59 +0100)]
ref #8774: avoid NPE in termNodeDto
Andreas Müller [Fri, 27 Nov 2020 17:24:40 +0000 (18:24 +0100)]
ref #9280 rename IKeyTerm.getMessage() => .getLabel()
Andreas Müller [Fri, 27 Nov 2020 16:46:57 +0000 (17:46 +0100)]
cleanup
Andreas Kohlbecker [Fri, 27 Nov 2020 15:07:08 +0000 (16:07 +0100)]
ref #9335 creating fallback representation for Terms in TermBaseBeanProcessor - bug fix
Andreas Kohlbecker [Fri, 27 Nov 2020 14:45:12 +0000 (15:45 +0100)]
ref #9335 creating fallback representation for Terms in TermBaseBeanProcessor - 2
Andreas Kohlbecker [Fri, 27 Nov 2020 14:43:40 +0000 (15:43 +0100)]
ref #9335 creating fallback representation for Terms in TermBaseBeanProcessor
Andreas Kohlbecker [Fri, 27 Nov 2020 11:52:24 +0000 (12:52 +0100)]
ref #9265 removing NomenclaturalSourceBeanProcessor since it causes many hard to controll LazyInitializationExcptions in web services
Andreas Kohlbecker [Fri, 27 Nov 2020 11:49:17 +0000 (12:49 +0100)]
typo
Andreas Kohlbecker [Fri, 27 Nov 2020 09:52:45 +0000 (10:52 +0100)]
code cleaning and improving documentation
Andreas Kohlbecker [Fri, 27 Nov 2020 09:51:00 +0000 (10:51 +0100)]
RegistrationDTO: typifiedName as non-property
Andreas Müller [Wed, 25 Nov 2020 20:14:37 +0000 (21:14 +0100)]
ref #6623 include microReference in DefaultReferenceCacheStrategy.getCitation(...) (cont.)
Andreas Müller [Wed, 25 Nov 2020 19:58:08 +0000 (20:58 +0100)]
ref #6623 include microReference in DefaultReferenceCacheStrategy.getCitation(...)
Andreas Müller [Wed, 25 Nov 2020 19:55:10 +0000 (20:55 +0100)]
cleanup
Andreas Müller [Wed, 25 Nov 2020 19:01:38 +0000 (20:01 +0100)]
change name for TaggedEntityReference
Andreas Kohlbecker [Wed, 25 Nov 2020 17:08:02 +0000 (18:08 +0100)]
ref #9279 TypeDesignationDTO basing on new class RepresentableEntityReference
Andreas Kohlbecker [Wed, 25 Nov 2020 16:43:59 +0000 (17:43 +0100)]
ref #9265 making use of nomenclaturalSource->nomenclaturalCitation - extending initStrategy
Andreas Müller [Wed, 25 Nov 2020 16:25:09 +0000 (17:25 +0100)]
cleanup
Andreas Müller [Wed, 25 Nov 2020 16:24:39 +0000 (17:24 +0100)]
ref #9322 remove invalid designation relationship from cdmlib
Andreas Kohlbecker [Wed, 25 Nov 2020 16:06:13 +0000 (17:06 +0100)]
ref #9265 introducing NomenclaturalSourceBeanProcessor to add nomenclaturalCitation to web service responses
Andreas Kohlbecker [Wed, 25 Nov 2020 13:57:39 +0000 (14:57 +0100)]
ref #9265 implementing protologueLinks web service
Andreas Müller [Wed, 25 Nov 2020 13:14:18 +0000 (14:14 +0100)]
ref #9282 fix NPE in nomenclaturalStanding computation
Katja Luther [Wed, 25 Nov 2020 08:36:37 +0000 (09:36 +0100)]
avoid NPE and CCE
Andreas Müller [Tue, 24 Nov 2020 22:04:11 +0000 (23:04 +0100)]
ref #9279 fix TypedEntity for source
Andreas Müller [Tue, 24 Nov 2020 20:58:54 +0000 (21:58 +0100)]
ref #9279 add TypedEntities to TypeDesignationDTO
Andreas Müller [Tue, 24 Nov 2020 20:57:54 +0000 (21:57 +0100)]
cleanup
Andreas Müller [Tue, 24 Nov 2020 19:51:23 +0000 (20:51 +0100)]
ref #9279 use RegistrationDTO instead of TypedEntityReference for TypeDesignations
Andreas Müller [Tue, 24 Nov 2020 19:36:47 +0000 (20:36 +0100)]
cleanup
Andreas Müller [Tue, 24 Nov 2020 18:30:03 +0000 (19:30 +0100)]
ref #9279 fix make WorkingSet a Map again and cleanup
Andreas Müller [Tue, 24 Nov 2020 17:56:37 +0000 (18:56 +0100)]
ref #9279 make WorkingSet a Map again and fix typo in RegistrationDTO attribute and fix jsonConfigurations
Andreas Müller [Tue, 24 Nov 2020 17:16:46 +0000 (18:16 +0100)]
ref #9279 improve generics for TypedEntityReference
Andreas Müller [Tue, 24 Nov 2020 16:31:47 +0000 (17:31 +0100)]
ref #9279 separate formatting from TypeDesignationSetManager and extract TypeDesignationWorkingSet as top level class and some cleanup
Andreas Müller [Tue, 24 Nov 2020 14:00:57 +0000 (15:00 +0100)]
cleanup
Andreas Müller [Tue, 24 Nov 2020 13:35:39 +0000 (14:35 +0100)]
ref #9279 remove redundant typifiedNameRef (TypedEntityReference) and cleanup
Andreas Müller [Tue, 24 Nov 2020 11:57:54 +0000 (12:57 +0100)]
cleanup
Andreas Müller [Tue, 24 Nov 2020 11:56:40 +0000 (12:56 +0100)]
ref #9282 adapt dataset.dtd to NomenclaturalStanding
Andreas Müller [Tue, 24 Nov 2020 11:23:15 +0000 (12:23 +0100)]
preliminary fix compile error in SchemaUpdater_5185_5186
Andreas Müller [Tue, 24 Nov 2020 11:18:07 +0000 (12:18 +0100)]
cleanup
Andreas Müller [Tue, 24 Nov 2020 11:16:04 +0000 (12:16 +0100)]
ref #9272 remove invalid state from nom. ambig. and nom. confus.
Andreas Müller [Tue, 24 Nov 2020 09:55:21 +0000 (10:55 +0100)]
ref #9272, ref #5794 adapt taxon ordering to nomenclatural standing
Andreas Müller [Tue, 24 Nov 2020 09:53:37 +0000 (10:53 +0100)]
cleanup
Katja Luther [Tue, 24 Nov 2020 10:44:43 +0000 (11:44 +0100)]
add termNodeDto to list of terms of termTreeDto
Katja Luther [Tue, 24 Nov 2020 10:36:46 +0000 (11:36 +0100)]
add classification to config string
Andreas Müller [Mon, 23 Nov 2020 21:12:25 +0000 (22:12 +0100)]
ref #9279 remove redundant string and TaggedText computing and fix post separator for names type sets
Andreas Müller [Mon, 23 Nov 2020 21:10:32 +0000 (22:10 +0100)]
cleanup
Andreas Müller [Mon, 23 Nov 2020 20:14:42 +0000 (21:14 +0100)]
cleanup
Andreas Müller [Fri, 20 Nov 2020 21:00:43 +0000 (22:00 +0100)]
ref #6591 fix SingleTermRemover
Andreas Müller [Fri, 20 Nov 2020 17:23:33 +0000 (18:23 +0100)]
fix endSchemaVersion in SchemaUpdater_5184_5185