cdmlib.git
7 years agoref #6366 move cultivar attributes and functions to TaxonNameBase
Andreas Müller [Fri, 27 Jan 2017 23:54:51 +0000 (00:54 +0100)]
ref #6366 move cultivar attributes and functions to TaxonNameBase

7 years agocleanup
Andreas Müller [Fri, 27 Jan 2017 18:59:59 +0000 (19:59 +0100)]
cleanup

7 years agoref #6365 merge static methods from BotanicaName to TaxonNameBase
Andreas Müller [Fri, 27 Jan 2017 18:59:40 +0000 (19:59 +0100)]
ref #6365 merge static methods from BotanicaName to TaxonNameBase

7 years agoref #6365 ref #6360 ref #6364 replace taxon name factory methods
Andreas Müller [Fri, 27 Jan 2017 00:06:24 +0000 (01:06 +0100)]
ref #6365  ref #6360 ref #6364 replace taxon name factory methods

7 years agoref #6365 replace ZoologicalName factory methods
Andreas Müller [Fri, 27 Jan 2017 00:04:57 +0000 (01:04 +0100)]
ref #6365 replace ZoologicalName factory methods

7 years agoref #6360 replace NonViralName factory methods
Andreas Müller [Fri, 27 Jan 2017 00:02:42 +0000 (01:02 +0100)]
ref #6360 replace NonViralName factory methods

7 years agoref #6365 Move all ZoologicalName attributes up to TaxonNameBase
Andreas Müller [Thu, 26 Jan 2017 23:54:57 +0000 (00:54 +0100)]
ref #6365 Move all ZoologicalName attributes up to TaxonNameBase

7 years agoref #6364 Move all BacterialName attributes up to TaxonNameBase
Andreas Müller [Thu, 26 Jan 2017 22:49:52 +0000 (23:49 +0100)]
ref #6364 Move all BacterialName attributes up to TaxonNameBase

7 years agoref #6364 Move all ViralName attributes up to TaxonNameBase
Andreas Müller [Thu, 26 Jan 2017 22:25:34 +0000 (23:25 +0100)]
ref #6364 Move all ViralName attributes up to TaxonNameBase

7 years agominor
Andreas Müller [Thu, 26 Jan 2017 22:13:13 +0000 (23:13 +0100)]
minor

7 years agofix #6393 enabling manage services to be accessed via ajax with authentication
Andreas Kohlbecker [Fri, 27 Jan 2017 13:11:45 +0000 (14:11 +0100)]
fix #6393 enabling manage services to be accessed via ajax with authentication

7 years agoref #6369 adapt existing occurrences of interface to removed generics
Andreas Müller [Thu, 26 Jan 2017 15:59:09 +0000 (16:59 +0100)]
ref #6369 adapt existing occurrences of interface to removed generics

7 years agoref #6369 remove generics from interfaces
Andreas Müller [Thu, 26 Jan 2017 15:58:35 +0000 (16:58 +0100)]
ref #6369 remove generics from interfaces

7 years agofix #6369 add interface for all names
Andreas Müller [Thu, 26 Jan 2017 15:57:20 +0000 (16:57 +0100)]
fix #6369 add interface for all names

7 years agoref #6369 add IViralName interface
Andreas Müller [Thu, 26 Jan 2017 15:56:22 +0000 (16:56 +0100)]
ref #6369 add IViralName interface

7 years agoref #6369 add remaining interfaces
Andreas Müller [Thu, 26 Jan 2017 15:27:33 +0000 (16:27 +0100)]
ref #6369 add remaining interfaces

7 years agoref #6362 removed some NonViralName occurrences (make it compiling again)
Andreas Müller [Thu, 26 Jan 2017 15:00:12 +0000 (16:00 +0100)]
ref #6362  removed some NonViralName occurrences (make it compiling again)

7 years agoref #6369 Add interfaces for TaxonNameBase and NonViralName
Andreas Müller [Thu, 26 Jan 2017 14:32:30 +0000 (15:32 +0100)]
ref #6369 Add interfaces for TaxonNameBase and NonViralName

7 years agocleanup
Andreas Müller [Thu, 26 Jan 2017 14:31:50 +0000 (15:31 +0100)]
cleanup

7 years agoref #6362 removed some NonViralName occurrences (non-compiling as changing in model...
Andreas Müller [Wed, 25 Jan 2017 13:52:55 +0000 (14:52 +0100)]
ref #6362  removed some NonViralName occurrences (non-compiling as changing in model are still missing)

7 years agofix #6382 proper handling of authentication in cdm_ws_progress.js
Andreas Kohlbecker [Wed, 25 Jan 2017 17:09:57 +0000 (18:09 +0100)]
fix #6382 proper handling of authentication in cdm_ws_progress.js

7 years agoRevert "Revert "ref #6369 Add interfaces for TaxonNameBase and NonViralName""
Andreas Kohlbecker [Wed, 25 Jan 2017 11:54:44 +0000 (12:54 +0100)]
Revert "Revert "ref #6369 Add interfaces for TaxonNameBase and NonViralName""

This reverts commit 949c09b142f2806539e3fb399bef980d3e17e293.

7 years agoRevert "Revert "fix #6360 moved all NonViralName functionality to TaxonNameBase""
Andreas Kohlbecker [Wed, 25 Jan 2017 11:54:41 +0000 (12:54 +0100)]
Revert "Revert "fix #6360 moved all NonViralName functionality to TaxonNameBase""

This reverts commit 9b9d0a956d78e3aec1024bc0a5fa33f33e5b33aa.

7 years agominor
Andreas Müller [Wed, 25 Jan 2017 11:51:03 +0000 (12:51 +0100)]
minor

7 years agoUpdating develop poms back to pre merge state
jenkins [Tue, 24 Jan 2017 15:09:59 +0000 (16:09 +0100)]
Updating develop poms back to pre merge state

7 years agoMerge branch 'master' into develop
jenkins [Tue, 24 Jan 2017 15:09:58 +0000 (16:09 +0100)]
Merge branch 'master' into develop

7 years agoUpdating develop poms to hotfix version to avoid merge conflicts
jenkins [Tue, 24 Jan 2017 15:09:58 +0000 (16:09 +0100)]
Updating develop poms to hotfix version to avoid merge conflicts

7 years agoMerge branch 'hotfix/4.5.1' 4.5.1
jenkins [Tue, 24 Jan 2017 15:09:55 +0000 (16:09 +0100)]
Merge branch 'hotfix/4.5.1'

7 years agoupdating poms for branch'hotfix/4.5.1' with non-snapshot versions
jenkins [Tue, 24 Jan 2017 14:52:54 +0000 (15:52 +0100)]
updating poms for branch'hotfix/4.5.1' with non-snapshot versions

7 years agoMerge branch 'develop' into hotfix/4.5.1
Andreas Kohlbecker [Tue, 24 Jan 2017 12:41:03 +0000 (13:41 +0100)]
Merge branch 'develop' into hotfix/4.5.1

7 years agoupdating poms for 4.5.1 branch with snapshot versions
jenkins [Tue, 24 Jan 2017 12:39:52 +0000 (13:39 +0100)]
updating poms for 4.5.1 branch with snapshot versions

7 years agoRevert "fix #6360 moved all NonViralName functionality to TaxonNameBase"
Andreas Kohlbecker [Tue, 24 Jan 2017 12:38:16 +0000 (13:38 +0100)]
Revert "fix #6360 moved all NonViralName functionality to TaxonNameBase"

This reverts commit 7d8c96134bda3c11d053df2e8e5d03f32a500ee3.

7 years agoRevert "ref #6369 Add interfaces for TaxonNameBase and NonViralName"
Andreas Kohlbecker [Tue, 24 Jan 2017 12:38:03 +0000 (13:38 +0100)]
Revert "ref #6369 Add interfaces for TaxonNameBase and NonViralName"

This reverts commit 1e42628a4c24232f9b03a2a1e508d7cd79e0e0ba.

7 years agocode cleaning
Katja Luther [Mon, 23 Jan 2017 13:46:36 +0000 (14:46 +0100)]
code cleaning

7 years agoFix potential NPE when there is a facade with no derived unit
Patrick Plitzner [Mon, 23 Jan 2017 14:19:38 +0000 (15:19 +0100)]
Fix potential NPE when there is a facade with no derived unit

7 years agofix #6373 fixing MediaAutoInitializer
Andreas Kohlbecker [Mon, 23 Jan 2017 13:14:58 +0000 (14:14 +0100)]
fix #6373 fixing MediaAutoInitializer

7 years agorevert last minor change in misapplied name search
Katja Luther [Mon, 23 Jan 2017 12:53:15 +0000 (13:53 +0100)]
revert last minor change in misapplied name search

7 years agominor
Katja Luther [Mon, 23 Jan 2017 12:35:32 +0000 (13:35 +0100)]
minor

7 years agofix tests
Katja Luther [Mon, 23 Jan 2017 12:03:29 +0000 (13:03 +0100)]
fix tests

7 years agoref #6296 confirming that modified expectations are correct, removing FIXMEs
Andreas Kohlbecker [Mon, 23 Jan 2017 11:26:53 +0000 (12:26 +0100)]
ref #6296 confirming that modified expectations are correct, removing FIXMEs

7 years agofix #6296: fix the parameter settings in search queries
Katja Luther [Mon, 23 Jan 2017 11:06:32 +0000 (12:06 +0100)]
fix #6296: fix the parameter settings in search queries

7 years agoref #6296 more tests for findByTaxaAndName
Andreas Kohlbecker [Mon, 23 Jan 2017 08:21:01 +0000 (09:21 +0100)]
ref #6296 more tests for findByTaxaAndName

7 years agofixing createTestData - applying manual additions from xml dataset
Andreas Kohlbecker [Fri, 20 Jan 2017 22:05:46 +0000 (23:05 +0100)]
fixing createTestData - applying manual additions from xml dataset

7 years agosplitting TaxonService search tests for freetext and standard search - all enabled...
Andreas Kohlbecker [Fri, 20 Jan 2017 21:26:24 +0000 (22:26 +0100)]
splitting TaxonService search tests for freetext and standard search - all enabled test cases are successful by now

7 years agominor refactoring of TaxonServiceSearchTest
Andreas Kohlbecker [Fri, 20 Jan 2017 20:11:09 +0000 (21:11 +0100)]
minor refactoring of TaxonServiceSearchTest

7 years agoref #6369 Add interfaces for TaxonNameBase and NonViralName
Andreas Müller [Sat, 21 Jan 2017 12:45:03 +0000 (13:45 +0100)]
ref #6369 Add interfaces for TaxonNameBase and NonViralName

7 years agofix #6360 moved all NonViralName functionality to TaxonNameBase
Andreas Müller [Sat, 21 Jan 2017 10:28:08 +0000 (11:28 +0100)]
fix #6360 moved all NonViralName functionality to TaxonNameBase

7 years agofix #2501 remove redundant SDD import class
Andreas Müller [Fri, 20 Jan 2017 16:06:33 +0000 (17:06 +0100)]
fix #2501 remove redundant SDD import class

7 years agominor
Andreas Müller [Fri, 20 Jan 2017 16:04:03 +0000 (17:04 +0100)]
minor

7 years agoref #6354 additinonal test for non phrase queries
Andreas Kohlbecker [Fri, 20 Jan 2017 12:46:52 +0000 (13:46 +0100)]
ref #6354 additinonal test for non phrase queries

7 years agofix #6354 non phrase search with wildcard using the standart QueryParser
Andreas Kohlbecker [Fri, 20 Jan 2017 12:40:00 +0000 (13:40 +0100)]
fix #6354 non phrase search with wildcard using the standart QueryParser

7 years agofix #6296: fix problems for simple search
Katja Luther [Fri, 20 Jan 2017 12:01:51 +0000 (13:01 +0100)]
fix #6296: fix problems for simple search

7 years agoadd test for different search combinations
Katja Luther [Fri, 20 Jan 2017 09:13:48 +0000 (10:13 +0100)]
add test for different search combinations

7 years agofixed copy paste error for common name search
Katja Luther [Fri, 20 Jan 2017 08:23:33 +0000 (09:23 +0100)]
fixed copy paste error for common name search

7 years agoUpdating develop poms back to pre merge state
jenkins [Thu, 19 Jan 2017 11:13:29 +0000 (12:13 +0100)]
Updating develop poms back to pre merge state

7 years agoMerge branch 'master' into develop
jenkins [Thu, 19 Jan 2017 11:13:29 +0000 (12:13 +0100)]
Merge branch 'master' into develop

7 years agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 19 Jan 2017 11:13:28 +0000 (12:13 +0100)]
updating develop poms to master versions to avoid merge conflicts

7 years agoMerge branch 'release/4.5.0' 4.5.0
jenkins [Thu, 19 Jan 2017 11:13:24 +0000 (12:13 +0100)]
Merge branch 'release/4.5.0'

7 years agoupdating poms for branch'release/4.5.0' with non-snapshot versions
jenkins [Thu, 19 Jan 2017 10:56:29 +0000 (11:56 +0100)]
updating poms for branch'release/4.5.0' with non-snapshot versions

7 years agoupdating poms for 4.6.0-SNAPSHOT development
jenkins [Thu, 19 Jan 2017 10:42:36 +0000 (11:42 +0100)]
updating poms for 4.6.0-SNAPSHOT development

7 years agofix #6342: fix exception for ? in selection dialog
Katja Luther [Thu, 19 Jan 2017 09:34:30 +0000 (10:34 +0100)]
fix #6342: fix exception for ? in selection dialog

7 years agoref #6339 reducing code duplication
Andreas Kohlbecker [Tue, 17 Jan 2017 16:47:44 +0000 (17:47 +0100)]
ref #6339 reducing code duplication

7 years agoInitialise sample designation to format keys for IdentifiableEntity
Patrick Plitzner [Tue, 17 Jan 2017 16:42:53 +0000 (17:42 +0100)]
Initialise sample designation to format keys for IdentifiableEntity

7 years agofix #6339 fixing missing respect to the frontendBaseUrl
Andreas Kohlbecker [Tue, 17 Jan 2017 16:21:29 +0000 (17:21 +0100)]
fix #6339 fixing missing respect to the frontendBaseUrl

7 years agoref #6248 also protecting /**description/accumulateDistributions
Andreas Kohlbecker [Tue, 17 Jan 2017 15:49:31 +0000 (16:49 +0100)]
ref #6248 also protecting /**description/accumulateDistributions

7 years agoref #6249 prefixig all logappender with instance (bean) name for EnhancedPatternLayout
Andreas Kohlbecker [Tue, 17 Jan 2017 15:36:44 +0000 (16:36 +0100)]
ref #6249 prefixig all logappender with instance (bean) name for EnhancedPatternLayout

7 years agofix #6248 implementing global management users for machine clients
Andreas Kohlbecker [Tue, 17 Jan 2017 10:25:20 +0000 (11:25 +0100)]
fix #6248 implementing global management users for machine clients

7 years agominor code cleaning
Andreas Kohlbecker [Tue, 17 Jan 2017 10:10:28 +0000 (11:10 +0100)]
minor code cleaning

7 years agoremoving unused and misleading method
Andreas Kohlbecker [Mon, 16 Jan 2017 10:19:47 +0000 (11:19 +0100)]
removing unused and misleading method

7 years agoref #6118 enabling missing httpbasic authentication for oauth secured endpoints
Andreas Kohlbecker [Mon, 16 Jan 2017 09:45:37 +0000 (10:45 +0100)]
ref #6118 enabling missing httpbasic authentication for oauth secured endpoints

7 years agocleaning up CdmUtils
Andreas Kohlbecker [Mon, 16 Jan 2017 08:17:13 +0000 (09:17 +0100)]
cleaning up CdmUtils
   - removing usused method
   - reducing code duplication

7 years agofix #4223 using the ComplexPhraseQuery for phrase searches with wildcards
Andreas Kohlbecker [Fri, 13 Jan 2017 09:24:59 +0000 (10:24 +0100)]
fix #4223 using the ComplexPhraseQuery for phrase searches with wildcards

7 years agoref #6158 Update source code repository from svn to git
Patrick Plitzner [Fri, 13 Jan 2017 08:26:50 +0000 (09:26 +0100)]
ref #6158 Update source code repository from svn to git

7 years agofix #6227 solvig LIE in DerivedUnitFacade webservice
Andreas Kohlbecker [Thu, 12 Jan 2017 16:58:52 +0000 (17:58 +0100)]
fix #6227 solvig LIE in DerivedUnitFacade webservice

7 years agoref #6301 extending media objects returned by MediaListController
Andreas Kohlbecker [Thu, 12 Jan 2017 12:52:17 +0000 (13:52 +0100)]
ref #6301 extending media objects returned by MediaListController
 - adding sources

7 years agofix #4377 adding missing bean init path missing after ref #5974
Andreas Kohlbecker [Wed, 11 Jan 2017 13:14:50 +0000 (14:14 +0100)]
fix #4377 adding missing bean init path missing after ref #5974

7 years agoref #6324 adding FIXME comment
Andreas Kohlbecker [Wed, 11 Jan 2017 11:44:42 +0000 (12:44 +0100)]
ref #6324 adding FIXME comment

7 years agofix #6323 adding missing bean init path missing after ref #5974
Andreas Kohlbecker [Wed, 11 Jan 2017 11:43:52 +0000 (12:43 +0100)]
fix #6323 adding missing bean init path missing after ref #5974

7 years agoref #6320 Add pherogram title cache to format keys
Patrick Plitzner [Tue, 10 Jan 2017 15:44:32 +0000 (16:44 +0100)]
ref #6320 Add pherogram title cache to format keys

7 years agoAdd new English quotation marks
Andreas Müller [Tue, 10 Jan 2017 13:44:55 +0000 (14:44 +0100)]
Add new English quotation marks

7 years agocleanup
Andreas Müller [Tue, 10 Jan 2017 10:10:36 +0000 (11:10 +0100)]
cleanup

7 years agosome code cleaning
Katja Luther [Tue, 10 Jan 2017 08:33:17 +0000 (09:33 +0100)]
some code cleaning

7 years agofix #3465 Progressmonitor API and better UpdateResult handling for setSecundumForSubtree
Andreas Müller [Mon, 9 Jan 2017 22:10:52 +0000 (23:10 +0100)]
fix #3465 Progressmonitor API and better UpdateResult handling for setSecundumForSubtree

7 years agofix #6317 fixing LIE related to inReference author teams
Andreas Kohlbecker [Mon, 9 Jan 2017 15:11:36 +0000 (16:11 +0100)]
fix #6317 fixing LIE related to inReference author teams

7 years agoun-commenting test part
Andreas Kohlbecker [Mon, 9 Jan 2017 14:34:24 +0000 (15:34 +0100)]
un-commenting test part

7 years agoref #6296: minor
Katja Luther [Mon, 9 Jan 2017 14:46:01 +0000 (15:46 +0100)]
ref  #6296: minor

7 years agoref #6296: minor
Katja Luther [Mon, 9 Jan 2017 14:39:29 +0000 (15:39 +0100)]
ref  #6296: minor

7 years agofix #6296: include the common name search into the search query of taxa and synonyms
Katja Luther [Mon, 9 Jan 2017 14:11:08 +0000 (15:11 +0100)]
fix #6296: include the common name search into the search query of taxa and synonyms

7 years agocleanup
Andreas Müller [Fri, 6 Jan 2017 23:20:17 +0000 (00:20 +0100)]
cleanup

7 years agofix #3465 implement setSecundumForSubtree
Andreas Müller [Fri, 6 Jan 2017 23:03:30 +0000 (00:03 +0100)]
fix #3465 implement setSecundumForSubtree

7 years agofix #6299: add openSession in getSession when there is no current session
Katja Luther [Tue, 3 Jan 2017 08:56:08 +0000 (09:56 +0100)]
fix  #6299: add openSession in getSession when there is no current session

7 years agoref #6190 removing svn property place holder in first line of code - java files
Andreas Kohlbecker [Tue, 20 Dec 2016 13:28:46 +0000 (14:28 +0100)]
ref #6190 removing svn property place holder in first line of code - java files

7 years agominot
Katja Luther [Tue, 20 Dec 2016 12:16:06 +0000 (13:16 +0100)]
minot

7 years agomissing changes for repair methods and cdmPreferences in editor
Katja Luther [Tue, 20 Dec 2016 12:01:24 +0000 (13:01 +0100)]
missing changes for repair methods and cdmPreferences in editor

7 years agoref #6190 removing svn property place holder in first line of code
Andreas Kohlbecker [Tue, 20 Dec 2016 10:49:50 +0000 (11:49 +0100)]
ref #6190 removing svn property place holder in first line of code

7 years agofix #6249 prefixig all logappender with instance (bean) name and disabling per instan...
Andreas Kohlbecker [Mon, 19 Dec 2016 14:17:41 +0000 (15:17 +0100)]
fix #6249 prefixig all logappender with instance (bean) name and disabling per instance log files

7 years agominor to fix the failing test
Katja Luther [Thu, 15 Dec 2016 13:03:55 +0000 (14:03 +0100)]
minor to fix the failing test

7 years agofix #6268 initializing decriptions of media entities for portal webservices
Andreas Kohlbecker [Thu, 15 Dec 2016 12:28:07 +0000 (13:28 +0100)]
fix #6268 initializing decriptions of media entities for portal webservices

7 years agoref #6283: minor changes to fix exceptions in polytomous key editing
Katja Luther [Thu, 15 Dec 2016 11:37:47 +0000 (12:37 +0100)]
ref #6283: minor changes to fix exceptions in polytomous key editing

7 years agofix #6261 searching all superclasses for generic type arguments in base controller
Andreas Kohlbecker [Thu, 15 Dec 2016 11:09:44 +0000 (12:09 +0100)]
fix #6261 searching all superclasses for generic type arguments in base controller