cdmlib.git
3 years agoref #9225 !! PRELIMINARY ignore failing tests
Andreas Müller [Mon, 21 Sep 2020 14:46:19 +0000 (16:46 +0200)]
ref #9225  !! PRELIMINARY ignore failing tests

3 years agocleanup
Andreas Müller [Mon, 21 Sep 2020 14:18:44 +0000 (16:18 +0200)]
cleanup

3 years agoref #9225 revert direction of TaxonName.nomenclaturalSource -> NomenclaturalSource...
Andreas Müller [Mon, 21 Sep 2020 14:17:36 +0000 (16:17 +0200)]
ref #9225  revert direction of TaxonName.nomenclaturalSource -> NomenclaturalSource.sourcedName mapping and some related issues

3 years agoref #6589 add ProtologMover (not yet ready)
Andreas Müller [Thu, 17 Sep 2020 13:11:21 +0000 (15:11 +0200)]
ref #6589 add ProtologMover  (not yet ready)

3 years agocleanup
Andreas Müller [Wed, 16 Sep 2020 12:13:31 +0000 (14:13 +0200)]
cleanup

3 years agofix logging in StructuredDescriptionAggregationTest
Andreas Müller [Wed, 16 Sep 2020 09:19:04 +0000 (11:19 +0200)]
fix logging in StructuredDescriptionAggregationTest

3 years agoadding more explanation to test assertion
Andreas Kohlbecker [Wed, 16 Sep 2020 13:09:43 +0000 (15:09 +0200)]
adding more explanation to test assertion

3 years agoref #9225 update cached model
Andreas Müller [Wed, 16 Sep 2020 07:58:47 +0000 (09:58 +0200)]
ref #9225 update cached model

3 years agofix #9223 TaxonGraphBeforeTransactionCompleteProcess using NoemclaturalSource to...
Andreas Kohlbecker [Tue, 15 Sep 2020 20:20:09 +0000 (22:20 +0200)]
fix #9223 TaxonGraphBeforeTransactionCompleteProcess using NoemclaturalSource to detect nomRef changes

3 years agoRevert "temporarily unignore failing test"
Andreas Müller [Tue, 15 Sep 2020 09:03:46 +0000 (11:03 +0200)]
Revert "temporarily unignore failing test"

This reverts commit e488332815bad4f7e3de2844f22cf8e36b82314c.

3 years agotemporarily unignore failing test
Andreas Müller [Tue, 15 Sep 2020 09:02:48 +0000 (11:02 +0200)]
temporarily unignore failing test

3 years agoref #9225 implement NomenclaturalSource (cleanup and update script)
Andreas Müller [Tue, 15 Sep 2020 07:33:35 +0000 (09:33 +0200)]
ref #9225 implement NomenclaturalSource (cleanup and update script)

3 years agocleanup
Andreas Müller [Tue, 15 Sep 2020 07:25:22 +0000 (09:25 +0200)]
cleanup

3 years agodeprecate printDataSetWithNull
Andreas Müller [Tue, 15 Sep 2020 07:23:41 +0000 (09:23 +0200)]
deprecate printDataSetWithNull

3 years agocleanup
Andreas Müller [Mon, 14 Sep 2020 21:02:24 +0000 (23:02 +0200)]
cleanup

3 years agoref #9225 implement NomenclaturalSource
Andreas Müller [Mon, 14 Sep 2020 20:42:36 +0000 (22:42 +0200)]
ref #9225 implement NomenclaturalSource

3 years agocleanup
Andreas Müller [Mon, 14 Sep 2020 12:26:05 +0000 (14:26 +0200)]
cleanup

3 years agoref #6581 add listener to TaxonName.nomenclaturalSource (cont.)
Andreas Müller [Thu, 10 Sep 2020 15:23:48 +0000 (17:23 +0200)]
ref #6581 add listener to TaxonName.nomenclaturalSource (cont.)

3 years agoref #3547 remove created and updated in CdmEntityDaoBaseTest
Andreas Müller [Thu, 10 Sep 2020 15:23:16 +0000 (17:23 +0200)]
ref #3547 remove created and updated in CdmEntityDaoBaseTest

3 years agocleanup
Andreas Müller [Thu, 10 Sep 2020 13:09:06 +0000 (15:09 +0200)]
cleanup

3 years agoref #6581 add listener to TaxonName.nomenclaturalSource
Andreas Müller [Thu, 10 Sep 2020 13:04:06 +0000 (15:04 +0200)]
ref #6581 add listener to TaxonName.nomenclaturalSource

3 years agoref #6581 fixing means to get bean property
Andreas Kohlbecker [Fri, 11 Sep 2020 14:19:51 +0000 (16:19 +0200)]
ref #6581 fixing means to get bean property

3 years agofix #7862 full documentation on TaxonGraphHibernateListener, TaxonGraphBeforeTransact...
Andreas Kohlbecker [Fri, 11 Sep 2020 11:22:04 +0000 (13:22 +0200)]
fix #7862 full documentation on TaxonGraphHibernateListener, TaxonGraphBeforeTransactionCompleteProcess etc.

3 years agocleanup
Andreas Müller [Thu, 10 Sep 2020 12:15:12 +0000 (14:15 +0200)]
cleanup

3 years agoref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml (cont.)
Andreas Müller [Thu, 10 Sep 2020 12:14:59 +0000 (14:14 +0200)]
ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml (cont.)

3 years agoref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml
Andreas Müller [Thu, 10 Sep 2020 12:13:14 +0000 (14:13 +0200)]
ref #3547 remove unused test data for TaxonNameDaoHibernateImplTest.xml

3 years agocleanup and some java doc
Andreas Müller [Thu, 10 Sep 2020 11:25:48 +0000 (13:25 +0200)]
cleanup and some java doc

3 years agocleanup
Andreas Müller [Thu, 10 Sep 2020 07:37:24 +0000 (09:37 +0200)]
cleanup

3 years agoref #6581 ref #9222 fixing NPE in TaxonPortalController
Andreas Kohlbecker [Thu, 10 Sep 2020 06:34:18 +0000 (08:34 +0200)]
ref #6581 ref #9222 fixing NPE in TaxonPortalController

3 years agoref #6581 ref #9222 fixing init strategy in TaxonPortalController
Andreas Kohlbecker [Thu, 10 Sep 2020 06:24:03 +0000 (08:24 +0200)]
ref #6581 ref #9222 fixing init strategy in TaxonPortalController

3 years agofix TaxonName.getCitationString()
Andreas Müller [Wed, 9 Sep 2020 20:23:52 +0000 (22:23 +0200)]
fix TaxonName.getCitationString()

3 years agocleanup
Andreas Müller [Wed, 9 Sep 2020 20:23:26 +0000 (22:23 +0200)]
cleanup

3 years agoref #6581 ref #9222 adding PolytomousKeyNodePortalController and missing name.nomencl...
Andreas Kohlbecker [Wed, 9 Sep 2020 16:15:54 +0000 (18:15 +0200)]
ref #6581 ref #9222 adding PolytomousKeyNodePortalController and missing name.nomenclaturalSource init strategys in TaxonPortalController

3 years agoremove method rectifyNameCacheStrategy and some cleanup
Andreas Müller [Wed, 9 Sep 2020 14:42:10 +0000 (16:42 +0200)]
remove method rectifyNameCacheStrategy and some cleanup

3 years agocleanup
Andreas Müller [Wed, 9 Sep 2020 14:37:23 +0000 (16:37 +0200)]
cleanup

3 years agofix return type of clone methods in CdmBase classes and some cleanup
Andreas Müller [Wed, 9 Sep 2020 13:45:20 +0000 (15:45 +0200)]
fix return type of clone methods in CdmBase classes and some cleanup

3 years agocleanup
Andreas Müller [Wed, 9 Sep 2020 12:31:26 +0000 (14:31 +0200)]
cleanup

3 years agoref #9204 adapt all spring application context xml configuration files to spring...
Andreas Müller [Wed, 9 Sep 2020 12:30:55 +0000 (14:30 +0200)]
ref #9204 adapt all spring application context xml configuration files to spring schema version 4.3

3 years agoref #9222 adapting dataportal and tests to single sourced classes - typedesignations
Andreas Kohlbecker [Wed, 9 Sep 2020 10:45:11 +0000 (12:45 +0200)]
ref #9222 adapting dataportal and tests to single sourced classes - typedesignations

3 years agoref #9222 ref #6581 adapting web services to single sourced classes
Andreas Kohlbecker [Wed, 9 Sep 2020 08:07:32 +0000 (10:07 +0200)]
ref #9222 ref #6581 adapting web services to single sourced classes

3 years agoadapt TestModelUpdate
Andreas Müller [Mon, 7 Sep 2020 20:38:18 +0000 (22:38 +0200)]
adapt TestModelUpdate

3 years agoref #6581 fix detail handling with single quote character
Andreas Müller [Mon, 7 Sep 2020 20:37:35 +0000 (22:37 +0200)]
ref #6581 fix detail handling with single quote character

3 years agoref #9124 skip altitude adder if altitude feature does not yet exist
Andreas Müller [Mon, 7 Sep 2020 20:34:54 +0000 (22:34 +0200)]
ref #9124 skip altitude adder if altitude feature does not yet exist

3 years agocleanup
Andreas Müller [Mon, 7 Sep 2020 20:32:46 +0000 (22:32 +0200)]
cleanup

3 years agofix #8964 update reverse label for later homonym (update script)
Andreas Müller [Mon, 7 Sep 2020 15:51:37 +0000 (17:51 +0200)]
fix #8964 update reverse label for later homonym (update script)

3 years agofix #8326 update label for blocking name and isonym relationships (update script)
Andreas Müller [Mon, 7 Sep 2020 15:49:46 +0000 (17:49 +0200)]
fix #8326 update label for blocking name and isonym relationships (update script)

3 years agofix #9124 add meter to altitude (update script)
Andreas Müller [Mon, 7 Sep 2020 15:47:49 +0000 (17:47 +0200)]
fix #9124 add meter to altitude (update script)

3 years agofix #9120 update flowering period as supports temporal data (update script)
Andreas Müller [Mon, 7 Sep 2020 15:46:36 +0000 (17:46 +0200)]
fix #9120 update flowering period as supports temporal data (update script)

3 years agofix #9121 add abbrevLabel and symbol to features flowering and fruiting (update script)
Andreas Müller [Mon, 7 Sep 2020 15:45:13 +0000 (17:45 +0200)]
fix #9121 add abbrevLabel and symbol to features flowering and fruiting (update script)

3 years agofix #9062 remove StatisticalMeasurementValue.value_old
Andreas Müller [Mon, 7 Sep 2020 15:43:33 +0000 (17:43 +0200)]
fix #9062 remove StatisticalMeasurementValue.value_old

3 years agofix #9082 fix empty partials_start and partials_end handling
Andreas Müller [Mon, 7 Sep 2020 15:41:42 +0000 (17:41 +0200)]
fix #9082 fix empty partials_start and partials_end handling

3 years agofix #9094 update TaxonNode.source from IdentifiableSource to DescriptionElementSource
Andreas Müller [Mon, 7 Sep 2020 15:39:40 +0000 (17:39 +0200)]
fix #9094 update TaxonNode.source from IdentifiableSource to DescriptionElementSource

3 years agoref #6581 move references to sources for NomenclaturalStatus, NameRelationship, Taxon...
Andreas Müller [Mon, 7 Sep 2020 15:38:01 +0000 (17:38 +0200)]
ref #6581 move references to sources for NomenclaturalStatus, NameRelationship, TaxonRelationship, HybridRelationship, TypeDesignation and TaxonName.nomenclaturalReference

3 years agoadd base functionality for model update 5.15.2 -> 5.18.0
Andreas Müller [Mon, 7 Sep 2020 15:34:22 +0000 (17:34 +0200)]
add base functionality for model update 5.15.2 -> 5.18.0

3 years agoref #9121 and ref #9124 add abbreviations to feature and add measurement unit to...
Andreas Müller [Mon, 7 Sep 2020 15:30:32 +0000 (17:30 +0200)]
ref #9121 and ref #9124 add abbreviations to feature and add measurement unit to feature altitude

3 years agofix DefaultTermInitializerTest in Suite
Andreas Müller [Mon, 7 Sep 2020 15:25:40 +0000 (17:25 +0200)]
fix DefaultTermInitializerTest in Suite

3 years agofix #9218 RegistrationController and RegistrationDTOController conform to CVE-2007...
Andreas Kohlbecker [Mon, 7 Sep 2020 15:24:47 +0000 (17:24 +0200)]
fix #9218 RegistrationController and RegistrationDTOController conform to CVE-2007-0450

3 years agoref #9103 adding missing init strategy element to TaxonController
Andreas Kohlbecker [Mon, 7 Sep 2020 13:22:41 +0000 (15:22 +0200)]
ref #9103 adding missing init strategy element to TaxonController

3 years agocleanup
Andreas Müller [Fri, 4 Sep 2020 13:45:13 +0000 (15:45 +0200)]
cleanup

3 years agoavoid multiple representation exception for source
Katja Luther [Thu, 3 Sep 2020 11:57:37 +0000 (13:57 +0200)]
avoid multiple representation exception for source

3 years agofix compile error in DefaultTermInitializerTest
Andreas Müller [Thu, 3 Sep 2020 04:35:22 +0000 (06:35 +0200)]
fix compile error in DefaultTermInitializerTest

3 years agoclose csv reader for TermLoader
Andreas Müller [Thu, 3 Sep 2020 04:29:23 +0000 (06:29 +0200)]
close csv reader for TermLoader

3 years agoref #9211 add TODO on Classification.source
Andreas Müller [Thu, 3 Sep 2020 04:28:52 +0000 (06:28 +0200)]
ref #9211 add TODO on Classification.source

3 years agocleanup
Andreas Müller [Thu, 3 Sep 2020 04:28:09 +0000 (06:28 +0200)]
cleanup

3 years agorevert ignore for EditGeoServiceTest
Andreas Müller [Thu, 3 Sep 2020 04:23:25 +0000 (06:23 +0200)]
revert ignore for EditGeoServiceTest

3 years agoref #9212 logging more information in preparation for fixing this bug
Andreas Kohlbecker [Wed, 2 Sep 2020 15:27:19 +0000 (17:27 +0200)]
ref #9212 logging more information in preparation for fixing this bug

3 years agoremoving unused taglib dependencies
Andreas Kohlbecker [Wed, 2 Sep 2020 13:59:13 +0000 (15:59 +0200)]
removing unused taglib dependencies

3 years agocleanup
Andreas Müller [Wed, 2 Sep 2020 12:19:32 +0000 (14:19 +0200)]
cleanup

3 years agoref #9204 update to commons-codec 1.15 in cdmlib
Andreas Müller [Wed, 2 Sep 2020 11:37:07 +0000 (13:37 +0200)]
ref #9204 update to commons-codec 1.15 in cdmlib

3 years agocleanup
Andreas Müller [Wed, 2 Sep 2020 08:01:32 +0000 (10:01 +0200)]
cleanup

3 years agocleanup
Andreas Müller [Tue, 1 Sep 2020 23:24:12 +0000 (01:24 +0200)]
cleanup

3 years agoref #9204 revert removing xml-apis from cdmlib
Andreas Müller [Tue, 1 Sep 2020 23:24:01 +0000 (01:24 +0200)]
ref #9204 revert removing xml-apis from cdmlib

3 years agoref #9204 fix parent pom
Andreas Müller [Tue, 1 Sep 2020 23:08:26 +0000 (01:08 +0200)]
ref #9204 fix parent pom

3 years agoref #9204 remove xml-apis from cdmlib as it is included in java8 (cont.)
Andreas Müller [Tue, 1 Sep 2020 23:08:00 +0000 (01:08 +0200)]
ref #9204 remove xml-apis from cdmlib as it is included in java8 (cont.)

3 years agoref #9204 remove xml-apis from cdmlib as it is included in java8
Andreas Müller [Tue, 1 Sep 2020 22:56:13 +0000 (00:56 +0200)]
ref #9204 remove xml-apis from cdmlib as it is included in java8

3 years agoref #9204 remove stax from cdmlib as it is included in java8
Andreas Müller [Tue, 1 Sep 2020 22:29:17 +0000 (00:29 +0200)]
ref #9204 remove stax from cdmlib as it is included in java8

3 years agoref #9204 replace jaxb-api by jakarta.xml.bind-api in cdmlib
Andreas Müller [Tue, 1 Sep 2020 19:58:01 +0000 (21:58 +0200)]
ref #9204 replace jaxb-api by jakarta.xml.bind-api in cdmlib

3 years agocleanup
Andreas Müller [Tue, 1 Sep 2020 18:55:33 +0000 (20:55 +0200)]
cleanup

3 years agoref #9204 remove aspectjrt and some other cleanup related to aspectj
Andreas Müller [Tue, 1 Sep 2020 18:55:12 +0000 (20:55 +0200)]
ref #9204 remove aspectjrt and some other cleanup related to aspectj

3 years agofix #9210 adding indexed format specifiers and fixing hql issues
Andreas Kohlbecker [Tue, 1 Sep 2020 14:43:53 +0000 (16:43 +0200)]
fix #9210 adding indexed format specifiers and fixing hql issues

3 years agoref #9204 update maven-resources-plugin to 2.7 (v3.x.x is available but needs adaptat...
Andreas Müller [Tue, 1 Sep 2020 14:26:57 +0000 (16:26 +0200)]
ref #9204 update maven-resources-plugin to 2.7 (v3.x.x is available but needs adaptation) and cleanup

3 years agoref #9204 preliminary revert maven-antrun-plugin version in cdmlib-model
Andreas Müller [Tue, 1 Sep 2020 14:12:22 +0000 (16:12 +0200)]
ref #9204 preliminary revert maven-antrun-plugin version in cdmlib-model

3 years agoref #9204 update maven-jar-plugin to v 3.2.0
Andreas Müller [Tue, 1 Sep 2020 13:59:16 +0000 (15:59 +0200)]
ref #9204 update maven-jar-plugin to v 3.2.0

3 years agoref #9204 move and comment hibernate3-maven-plugin for 001_cdm.ddl creation to cdmlib...
Andreas Müller [Tue, 1 Sep 2020 13:52:32 +0000 (15:52 +0200)]
ref #9204 move and comment hibernate3-maven-plugin for 001_cdm.ddl creation to cdmlib-test

3 years agocleanup
Andreas Müller [Tue, 1 Sep 2020 13:49:22 +0000 (15:49 +0200)]
cleanup

3 years agoref #9204fix version in maven-antrun-plugin
Andreas Müller [Tue, 1 Sep 2020 13:48:59 +0000 (15:48 +0200)]
ref #9204fix version in maven-antrun-plugin

3 years agoref #9204 update maven-antrun-plugin to v 3.0.0
Andreas Müller [Tue, 1 Sep 2020 13:35:41 +0000 (15:35 +0200)]
ref #9204 update maven-antrun-plugin to v 3.0.0

3 years agoupdate maven-surefire-plugin to latest version
Andreas Müller [Tue, 1 Sep 2020 13:33:00 +0000 (15:33 +0200)]
update maven-surefire-plugin to latest version

3 years agocleanup
Andreas Müller [Tue, 1 Sep 2020 13:31:22 +0000 (15:31 +0200)]
cleanup

3 years agoref #9204 upgrade osgi.core to v7 and upgrade maven-bundle-plugin to 5.1.1
Andreas Müller [Tue, 1 Sep 2020 13:18:36 +0000 (15:18 +0200)]
ref #9204 upgrade osgi.core to v7 and upgrade maven-bundle-plugin to 5.1.1

3 years agocleanup
Andreas Müller [Tue, 1 Sep 2020 12:14:41 +0000 (14:14 +0200)]
cleanup

3 years agoref #9204 try to remove org.ecipse:osgi from cdmlib-service and upgrade org.osgi...
Andreas Müller [Tue, 1 Sep 2020 12:13:55 +0000 (14:13 +0200)]
ref #9204 try to remove org.ecipse:osgi from cdmlib-service and upgrade org.osgi.core to v6

3 years agoref #9204 remove ooxml-schemas-1.4 from cdmlib-io (keep only poi-ooxml-schemas)
Andreas Müller [Tue, 1 Sep 2020 11:19:42 +0000 (13:19 +0200)]
ref #9204 remove ooxml-schemas-1.4 from cdmlib-io (keep only poi-ooxml-schemas)

3 years agoRevert "ref #6581 try to fix exception in MatchStrategyConfigurator"
Andreas Müller [Mon, 31 Aug 2020 21:44:43 +0000 (23:44 +0200)]
Revert "ref #6581 try to fix exception in MatchStrategyConfigurator"

This reverts commit e807e4380fddd21b2ac521057462a0d03cab298f.

3 years agoref #6581 try to fix exception in MatchStrategyConfigurator
Andreas Müller [Mon, 31 Aug 2020 21:41:50 +0000 (23:41 +0200)]
ref #6581 try to fix exception in MatchStrategyConfigurator

3 years agotry to fix exception in MatchStrategyConfigurator
Andreas Müller [Mon, 31 Aug 2020 21:40:45 +0000 (23:40 +0200)]
try to fix exception in MatchStrategyConfigurator

3 years agocleanup
Andreas Müller [Mon, 31 Aug 2020 21:40:10 +0000 (23:40 +0200)]
cleanup

3 years agoadd KeyStatement to PermissionClass
Andreas Müller [Mon, 31 Aug 2020 19:25:26 +0000 (21:25 +0200)]
add KeyStatement to PermissionClass

3 years agoref #9204 update jaxb to version 2.3.3 (fix compile error with ZipWriter)
Andreas Müller [Mon, 31 Aug 2020 17:34:05 +0000 (19:34 +0200)]
ref #9204 update jaxb to version 2.3.3 (fix compile error with ZipWriter)

3 years agoref #9204 update jaxb to version 2.3.3
Andreas Müller [Mon, 31 Aug 2020 17:20:13 +0000 (19:20 +0200)]
ref #9204 update jaxb to version 2.3.3