cdmlib.git
16 months agoref #6460 show feature for textData in refObjView and better handling for empty term...
Andreas Müller [Wed, 8 Mar 2023 13:33:52 +0000 (14:33 +0100)]
ref #6460 show feature for textData in refObjView and better handling for empty term labels

16 months agoadd default behavior to RegistrationIdentifierMinter (needed if configuration data...
Andreas Müller [Sat, 4 Mar 2023 16:25:52 +0000 (17:25 +0100)]
add default behavior to RegistrationIdentifierMinter (needed if configuration data is not available)

16 months agoadd fromTypeAndId factory method to TypedEntityReference
Andreas Müller [Sat, 4 Mar 2023 16:24:52 +0000 (17:24 +0100)]
add fromTypeAndId factory method to TypedEntityReference

16 months agocleanup
Andreas Müller [Sat, 4 Mar 2023 16:24:09 +0000 (17:24 +0100)]
cleanup

16 months agoref #10261 and rank class to name reference in registration DTO
Andreas Müller [Sat, 4 Mar 2023 16:23:40 +0000 (17:23 +0100)]
ref #10261 and rank class to name reference in registration DTO

16 months agocleanup
Andreas Müller [Sat, 4 Mar 2023 14:36:49 +0000 (15:36 +0100)]
cleanup

17 months agocleanup
Andreas Müller [Fri, 24 Feb 2023 10:26:15 +0000 (11:26 +0100)]
cleanup

17 months agoref #9766: add method to get vocabulary by uuid
Katja Luther [Thu, 2 Mar 2023 14:15:59 +0000 (15:15 +0100)]
ref #9766: add method to get vocabulary by uuid

17 months agoref #10072 update log4j.properties to log4j2.xml in launchers in cdmlib (cont.)
Andreas Müller [Fri, 24 Feb 2023 10:25:30 +0000 (11:25 +0100)]
ref #10072 update log4j.properties to log4j2.xml in launchers in cdmlib (cont.)

17 months agoref #10072 update log4j.properties to log4j2.xml in launchers in cdmlib
Andreas Müller [Thu, 23 Feb 2023 14:56:22 +0000 (15:56 +0100)]
ref #10072 update log4j.properties to log4j2.xml in launchers in cdmlib

17 months agoref #10222: improved typified name logging
Andreas Müller [Wed, 22 Feb 2023 22:36:36 +0000 (23:36 +0100)]
ref #10222: improved typified name logging

17 months agoref #10222: fix stackTrace handling
Andreas Müller [Wed, 22 Feb 2023 14:52:29 +0000 (15:52 +0100)]
ref #10222: fix stackTrace handling

17 months agoref #10222: fix NPE in loadSource
Andreas Müller [Wed, 22 Feb 2023 14:30:47 +0000 (15:30 +0100)]
ref #10222: fix NPE in loadSource

17 months agoref #10222: fix NPE in addMessages
Andreas Müller [Wed, 22 Feb 2023 14:30:00 +0000 (15:30 +0100)]
ref #10222: fix NPE in addMessages

17 months agoadd getter for Label in SourceDTO
Andreas Müller [Wed, 22 Feb 2023 14:05:35 +0000 (15:05 +0100)]
add getter for Label in SourceDTO

17 months agominor
Andreas Müller [Wed, 22 Feb 2023 14:00:17 +0000 (15:00 +0100)]
minor

17 months agoref #10222: fix NPE for handlingTypification
Andreas Müller [Wed, 22 Feb 2023 13:45:10 +0000 (14:45 +0100)]
ref #10222: fix NPE for handlingTypification

17 months agoref #10222: add longCitation formatting for sources
Andreas Müller [Tue, 21 Feb 2023 14:59:42 +0000 (15:59 +0100)]
ref #10222: add longCitation formatting for sources

17 months agoref #10222: add ruleConsidered to name relationships
Andreas Müller [Tue, 21 Feb 2023 14:54:25 +0000 (15:54 +0100)]
ref #10222: add ruleConsidered to name relationships

17 months agocleanup
Andreas Müller [Tue, 21 Feb 2023 09:42:45 +0000 (10:42 +0100)]
cleanup

17 months agoCleanup SourceDTO
Andreas Müller [Tue, 21 Feb 2023 09:42:36 +0000 (10:42 +0100)]
Cleanup SourceDTO

17 months agoref #10222: basic error handling for portalDTO
Andreas Müller [Thu, 16 Feb 2023 12:16:27 +0000 (13:16 +0100)]
ref #10222: basic error handling for portalDTO

17 months agoref #10222: fix NPE for namedArea partOf
Andreas Müller [Thu, 16 Feb 2023 11:42:15 +0000 (12:42 +0100)]
ref #10222: fix NPE for namedArea partOf

17 months agoref #10222: add timescope to facts
Andreas Müller [Wed, 15 Feb 2023 13:42:00 +0000 (14:42 +0100)]
ref #10222: add timescope to facts

17 months agoref #10222: add name relationships and some fixes and cleanups
Andreas Müller [Tue, 14 Feb 2023 20:03:16 +0000 (21:03 +0100)]
ref #10222: add name relationships and some fixes and cleanups

17 months agoref #10222: fix compile error and first IdentificationKey implementation
Andreas Müller [Tue, 14 Feb 2023 17:47:48 +0000 (18:47 +0100)]
ref #10222: fix compile error and first IdentificationKey implementation

17 months agoref #10222: load sources for DistributionDtos, and some first ordering of fact lists
Andreas Müller [Tue, 14 Feb 2023 16:59:44 +0000 (17:59 +0100)]
ref #10222: load sources for DistributionDtos, and some first ordering of fact lists

17 months agoref #10222: merge DescriptionUtility and DistributionServiceUtilities (cont.)
Andreas Müller [Tue, 14 Feb 2023 14:26:55 +0000 (15:26 +0100)]
ref #10222: merge DescriptionUtility and DistributionServiceUtilities (cont.)

17 months agoref #10222: improve SourceDto handling
Andreas Müller [Tue, 14 Feb 2023 13:56:47 +0000 (14:56 +0100)]
ref #10222: improve SourceDto handling

17 months agoref #10222: merge DescriptionUtility and DistributionServiceUtilities
Andreas Müller [Tue, 14 Feb 2023 13:56:10 +0000 (14:56 +0100)]
ref #10222: merge DescriptionUtility and DistributionServiceUtilities

17 months agoref #10249: adapt tests - continue
Katja [Tue, 14 Feb 2023 11:01:52 +0000 (12:01 +0100)]
ref #10249: adapt tests - continue

17 months agoref #10249: temporary fix of the test
Katja [Tue, 14 Feb 2023 10:48:52 +0000 (11:48 +0100)]
ref #10249: temporary fix of the test

17 months agoref #10249: adapting meta data
Katja Luther [Tue, 14 Feb 2023 10:15:55 +0000 (11:15 +0100)]
ref #10249: adapting meta data

17 months agoref #10249: continue adapting image meta data
Katja Luther [Tue, 14 Feb 2023 10:15:20 +0000 (11:15 +0100)]
ref #10249: continue adapting image meta data

17 months agoref #10249: minor
Katja Luther [Tue, 14 Feb 2023 09:34:00 +0000 (10:34 +0100)]
ref #10249: minor

17 months agoref #10249: adapt tests to metadata
Katja Luther [Tue, 14 Feb 2023 09:17:24 +0000 (10:17 +0100)]
ref #10249: adapt tests to metadata

17 months agoref #10249: adapt image and tests
Katja Luther [Tue, 14 Feb 2023 09:03:22 +0000 (10:03 +0100)]
ref #10249: adapt image and tests

17 months agoref #10249: more mappings
Katja Luther [Tue, 14 Feb 2023 08:24:49 +0000 (09:24 +0100)]
ref #10249: more mappings

17 months agoref #10222: full featureTree support and first implementation for all fact categories...
Andreas Müller [Mon, 13 Feb 2023 17:05:44 +0000 (18:05 +0100)]
ref #10222: full featureTree support and first implementation for all fact categories and some cleanup

17 months agoref #10249: adapt test and remove credit from mapping (needs to be
Katja [Mon, 13 Feb 2023 11:12:44 +0000 (12:12 +0100)]
ref #10249: adapt test and remove credit from mapping (needs to be
discussed)

17 months agoref #10249: add metaDataMapping Enum
Katja [Mon, 13 Feb 2023 09:50:53 +0000 (10:50 +0100)]
ref #10249: add metaDataMapping Enum

17 months agoref #10222: handle mediaMetaDataKeyIncludes default value is null and
Katja [Fri, 10 Feb 2023 10:00:45 +0000 (11:00 +0100)]
ref #10222: handle mediaMetaDataKeyIncludes default value is null and
adapt CamelCase handling

17 months agoref #10222 fix distribution status handling
Andreas Müller [Fri, 10 Feb 2023 12:04:03 +0000 (13:04 +0100)]
ref #10222 fix distribution status handling

17 months agoref #10222 use treeDTO in taxon page
Andreas Müller [Fri, 10 Feb 2023 11:58:39 +0000 (12:58 +0100)]
ref #10222 use treeDTO in taxon page

17 months agocleanup and missing commons.lang3 case
Andreas Müller [Fri, 10 Feb 2023 11:53:26 +0000 (12:53 +0100)]
cleanup and missing commons.lang3 case

17 months agoref #10222 fix location of IDistributionService in http invoker config
Andreas Müller [Fri, 10 Feb 2023 10:49:30 +0000 (11:49 +0100)]
ref #10222 fix location of IDistributionService in http invoker config

17 months agoref #10055 remove all dependencies to org.apache.commons.lang. from cdmlib
Andreas Müller [Fri, 10 Feb 2023 10:27:46 +0000 (11:27 +0100)]
ref #10055 remove all dependencies to org.apache.commons.lang.  from cdmlib

17 months agoref #10222 rename DistributionService to DistributionServiceImpl
Andreas Müller [Fri, 10 Feb 2023 10:09:48 +0000 (11:09 +0100)]
ref #10222 rename DistributionService to DistributionServiceImpl

17 months agohope this helps
Andreas Müller [Fri, 10 Feb 2023 09:56:37 +0000 (10:56 +0100)]
hope this helps

17 months agoref #10222 some renaming for EditGeoServiceTest and move CondensedDistribution Tests...
Andreas Müller [Fri, 10 Feb 2023 09:20:18 +0000 (10:20 +0100)]
ref #10222 some renaming for EditGeoServiceTest and move CondensedDistribution Tests to cdmlib-model and fix endemic symbol

17 months agoref #10222 fix EditGeoService issue by moving test files to correct folder
Andreas Müller [Fri, 10 Feb 2023 08:47:42 +0000 (09:47 +0100)]
ref #10222 fix EditGeoService issue by moving test files to correct folder

17 months agofix DerivedUnitFacadeTest issues by moving to correct folder
Andreas Müller [Fri, 10 Feb 2023 08:27:22 +0000 (09:27 +0100)]
fix DerivedUnitFacadeTest issues by moving to correct folder

17 months agocleanup
Andreas Müller [Fri, 10 Feb 2023 07:50:16 +0000 (08:50 +0100)]
cleanup

17 months agoref #10222 adapt httpInvoker config to distribution service
Andreas Müller [Thu, 9 Feb 2023 23:57:45 +0000 (00:57 +0100)]
ref #10222 adapt httpInvoker config to distribution service

17 months agoref #10222 add getter/setter to config
Andreas Müller [Thu, 9 Feb 2023 23:45:07 +0000 (00:45 +0100)]
ref #10222 add getter/setter to config

17 months agoMerge remote-tracking branch 'origin/develop' into develop
Andreas Müller [Thu, 9 Feb 2023 22:57:58 +0000 (23:57 +0100)]
Merge remote-tracking branch 'origin/develop' into develop

17 months agocleanup
Andreas Müller [Thu, 9 Feb 2023 22:47:51 +0000 (23:47 +0100)]
cleanup

17 months agoref #10222 first implementation of distributionInfo for portalDTO loading
Andreas Müller [Thu, 9 Feb 2023 22:39:33 +0000 (23:39 +0100)]
ref #10222 first implementation of distributionInfo for portalDTO loading

17 months agoref #10248: localize should also localize voc dto
Katja Luther [Thu, 9 Feb 2023 13:09:35 +0000 (14:09 +0100)]
ref #10248: localize should also localize voc dto

17 months agoref #10222 move DistributionInfo to cdmlib-services to make available for portalDTO...
Andreas Müller [Thu, 9 Feb 2023 11:02:52 +0000 (12:02 +0100)]
ref #10222 move DistributionInfo to cdmlib-services to make available for portalDTO loading

17 months agomove DerivedUnitFacade to cdmlib-model
Andreas Müller [Thu, 9 Feb 2023 10:55:36 +0000 (11:55 +0100)]
move DerivedUnitFacade to cdmlib-model

17 months agocleanup and commons-lang3 for StringUtils everywhere in cdmlib
Andreas Müller [Wed, 8 Feb 2023 21:40:44 +0000 (22:40 +0100)]
cleanup and commons-lang3 for StringUtils everywhere in cdmlib

17 months agoref #10245 (#9626). Combined publisher tests.
Belen Escobari [Wed, 8 Feb 2023 12:52:43 +0000 (13:52 +0100)]
ref #10245 (#9626). Combined publisher tests.

17 months agoref #10245 (#9626) add publisher and place published to ReferenceDefaultCacheStrategy
Belen Escobari [Wed, 8 Feb 2023 11:57:04 +0000 (12:57 +0100)]
ref #10245 (#9626) add publisher and place published to ReferenceDefaultCacheStrategy

17 months agoref #10245 revert dc5d76b60e13dc1 and 3b420db52da4be3e
Andreas Müller [Tue, 7 Feb 2023 14:30:17 +0000 (15:30 +0100)]
ref #10245 revert dc5d76b60e13dc1 and  3b420db52da4be3e

17 months agoref #10234: adapt tests
Katja [Tue, 7 Feb 2023 13:07:23 +0000 (14:07 +0100)]
ref #10234: adapt tests

17 months agoref: #10245 dev Test
Belen [Tue, 7 Feb 2023 12:49:02 +0000 (13:49 +0100)]
ref: #10245 dev Test

17 months agoref #10234: convert camel case labels
Katja [Tue, 7 Feb 2023 11:58:04 +0000 (12:58 +0100)]
ref #10234: convert camel case labels

17 months agoref #10242 add multiple nom status handling to comparator (avoid NPE) and hasStatus...
Andreas Müller [Tue, 7 Feb 2023 11:58:49 +0000 (12:58 +0100)]
ref #10242 add multiple nom status handling to comparator (avoid NPE) and hasStatus to TaxonName

17 months agoadd notho for rankless trinom hybrids
Andreas Müller [Tue, 7 Feb 2023 11:29:46 +0000 (12:29 +0100)]
add notho for rankless trinom hybrids

17 months agocleanup
Andreas Müller [Tue, 7 Feb 2023 11:29:06 +0000 (12:29 +0100)]
cleanup

17 months agoref #9626: add publisher and place published.
Belen [Tue, 7 Feb 2023 08:53:40 +0000 (09:53 +0100)]
ref #9626: add publisher and place published.

17 months agoref #10232 add handling for quantitative and categorical data to DescriptionElementFo...
Andreas Müller [Wed, 1 Feb 2023 19:05:28 +0000 (20:05 +0100)]
ref #10232 add handling for quantitative and categorical data to DescriptionElementFormatter

17 months agohandle potential NPE in MicroFormatCategoricalDescriptionBuilder
Andreas Müller [Wed, 1 Feb 2023 18:57:26 +0000 (19:57 +0100)]
handle potential NPE in MicroFormatCategoricalDescriptionBuilder

17 months agoref #10232 add modifier handling to QuantitativeDataFormatter and DesciptionElementFo...
Andreas Müller [Wed, 1 Feb 2023 18:56:51 +0000 (19:56 +0100)]
ref #10232 add modifier handling to QuantitativeDataFormatter and DesciptionElementFormatterBase

17 months agoref #10232 fix issue in common name export
Andreas Müller [Wed, 1 Feb 2023 18:55:24 +0000 (19:55 +0100)]
ref #10232 fix issue in common name export

18 months agoref #9664 fix updateNomenclaturalCache() and updateCollectorCache() in Person
Andreas Müller [Mon, 30 Jan 2023 14:57:10 +0000 (15:57 +0100)]
ref #9664 fix updateNomenclaturalCache() and updateCollectorCache() in Person

18 months agoref #10232 finalize CommonNameExcelImport and some cleanup
Andreas Müller [Mon, 30 Jan 2023 14:08:52 +0000 (15:08 +0100)]
ref #10232 finalize CommonNameExcelImport and some cleanup

18 months agofix https in EditGeoServiceTest
Andreas Müller [Fri, 27 Jan 2023 07:42:03 +0000 (08:42 +0100)]
fix https in EditGeoServiceTest

18 months agoref #10232 first implementation for E+M finnish common name import
Andreas Müller [Tue, 24 Jan 2023 22:15:02 +0000 (23:15 +0100)]
ref #10232 first implementation for E+M finnish common name import

18 months agoref #10222 annotation ids and cleanup
Andreas Müller [Sat, 21 Jan 2023 00:07:16 +0000 (01:07 +0100)]
ref #10222 annotation ids and cleanup

18 months agoref #10222 change labels for TaxonBaseDto (fix)
Andreas Müller [Fri, 20 Jan 2023 23:37:34 +0000 (00:37 +0100)]
ref #10222 change labels for TaxonBaseDto (fix)

18 months agominor
Andreas Müller [Fri, 20 Jan 2023 23:20:57 +0000 (00:20 +0100)]
minor

18 months agoref #10222 add supplemental data (cont.) + change labels for TaxonBaseDto
Andreas Müller [Fri, 20 Jan 2023 23:20:24 +0000 (00:20 +0100)]
ref #10222 add supplemental data (cont.) + change labels for TaxonBaseDto

18 months agoref #10222 add supplemental data
Andreas Müller [Fri, 20 Jan 2023 22:10:40 +0000 (23:10 +0100)]
ref #10222 add supplemental data

18 months agoadd method to get uuid and abbrev titlecache for a set of uuids
Katja Luther [Fri, 20 Jan 2023 10:10:00 +0000 (11:10 +0100)]
add method to get uuid and abbrev titlecache for a set of uuids

18 months agoref #10205: fixing parseOriginalDataSetUri
Katja Luther [Thu, 19 Jan 2023 12:34:00 +0000 (13:34 +0100)]
ref #10205: fixing parseOriginalDataSetUri

18 months agoref #10205: using Jackson library for GBIF import
Katja Luther [Thu, 19 Jan 2023 12:34:00 +0000 (13:34 +0100)]
ref #10205: using Jackson library for GBIF import

18 months agoref #10222 add tagged text for typification (cont.)
Andreas Müller [Thu, 19 Jan 2023 00:11:47 +0000 (01:11 +0100)]
ref #10222 add tagged text for typification (cont.)

18 months agoref #10222 add tagged text for synonyms
Andreas Müller [Thu, 19 Jan 2023 00:08:33 +0000 (01:08 +0100)]
ref #10222 add tagged text for synonyms

18 months agocleanup
Andreas Müller [Thu, 19 Jan 2023 00:08:03 +0000 (01:08 +0100)]
cleanup

18 months agoref #10222 move TypedLabel to model (fix NPE when using label only)
Andreas Müller [Thu, 19 Jan 2023 00:07:40 +0000 (01:07 +0100)]
ref #10222 move TypedLabel to model (fix NPE when using label only)

18 months agocleanup TypedEntityReference constructors in cdmlib
Andreas Müller [Wed, 18 Jan 2023 23:32:06 +0000 (00:32 +0100)]
cleanup TypedEntityReference constructors in cdmlib

18 months agoref #10222 add tagged text for typification
Andreas Müller [Wed, 18 Jan 2023 23:00:10 +0000 (00:00 +0100)]
ref #10222 add tagged text for typification

18 months agoref #10222 enable message handling and add message for type designation formatting...
Andreas Müller [Wed, 18 Jan 2023 22:51:53 +0000 (23:51 +0100)]
ref #10222 enable message handling and add message for type designation formatting exceptions

18 months agoref #10222 rename ContainerDto.collection to items
Andreas Müller [Wed, 18 Jan 2023 22:33:33 +0000 (23:33 +0100)]
ref #10222 rename ContainerDto.collection to items

18 months agoref #10222 add agentlink to taxonNodeAgentRelDto
Andreas Müller [Wed, 18 Jan 2023 22:28:54 +0000 (23:28 +0100)]
ref #10222 add agentlink to taxonNodeAgentRelDto

18 months agoref #10222 use taggedText for taxon label for now and cleanup
Andreas Müller [Wed, 18 Jan 2023 22:18:39 +0000 (23:18 +0100)]
ref #10222 use taggedText for taxon label for now and cleanup

18 months agoref #10222 move TypedLabel to model (fix text data label handling) and cleanup
Andreas Müller [Wed, 18 Jan 2023 21:12:19 +0000 (22:12 +0100)]
ref #10222 move TypedLabel to model (fix text data label handling) and cleanup

18 months agoref #10222 first implementation for typification in TaxonPageDto
Andreas Müller [Wed, 18 Jan 2023 21:07:52 +0000 (22:07 +0100)]
ref #10222 first implementation for typification in TaxonPageDto