cdmlib.git
18 months agomove DerivedUnitFacade to cdmlib-model
Andreas Müller [Thu, 9 Feb 2023 10:55:36 +0000 (11:55 +0100)]
move DerivedUnitFacade to cdmlib-model

18 months agocleanup and commons-lang3 for StringUtils everywhere in cdmlib
Andreas Müller [Wed, 8 Feb 2023 21:40:44 +0000 (22:40 +0100)]
cleanup and commons-lang3 for StringUtils everywhere in cdmlib

18 months agoref #10245 (#9626). Combined publisher tests.
Belen Escobari [Wed, 8 Feb 2023 12:52:43 +0000 (13:52 +0100)]
ref #10245 (#9626). Combined publisher tests.

18 months agoref #10245 (#9626) add publisher and place published to ReferenceDefaultCacheStrategy
Belen Escobari [Wed, 8 Feb 2023 11:57:04 +0000 (12:57 +0100)]
ref #10245 (#9626) add publisher and place published to ReferenceDefaultCacheStrategy

19 months agoref #10245 revert dc5d76b60e13dc1 and 3b420db52da4be3e
Andreas Müller [Tue, 7 Feb 2023 14:30:17 +0000 (15:30 +0100)]
ref #10245 revert dc5d76b60e13dc1 and  3b420db52da4be3e

19 months agoref #10234: adapt tests
Katja [Tue, 7 Feb 2023 13:07:23 +0000 (14:07 +0100)]
ref #10234: adapt tests

19 months agoref: #10245 dev Test
Belen [Tue, 7 Feb 2023 12:49:02 +0000 (13:49 +0100)]
ref: #10245 dev Test

19 months agoref #10234: convert camel case labels
Katja [Tue, 7 Feb 2023 11:58:04 +0000 (12:58 +0100)]
ref #10234: convert camel case labels

19 months agoref #10242 add multiple nom status handling to comparator (avoid NPE) and hasStatus...
Andreas Müller [Tue, 7 Feb 2023 11:58:49 +0000 (12:58 +0100)]
ref #10242 add multiple nom status handling to comparator (avoid NPE) and hasStatus to TaxonName

19 months agoadd notho for rankless trinom hybrids
Andreas Müller [Tue, 7 Feb 2023 11:29:46 +0000 (12:29 +0100)]
add notho for rankless trinom hybrids

19 months agocleanup
Andreas Müller [Tue, 7 Feb 2023 11:29:06 +0000 (12:29 +0100)]
cleanup

19 months agoref #9626: add publisher and place published.
Belen [Tue, 7 Feb 2023 08:53:40 +0000 (09:53 +0100)]
ref #9626: add publisher and place published.

19 months agoref #10232 add handling for quantitative and categorical data to DescriptionElementFo...
Andreas Müller [Wed, 1 Feb 2023 19:05:28 +0000 (20:05 +0100)]
ref #10232 add handling for quantitative and categorical data to DescriptionElementFormatter

19 months agohandle potential NPE in MicroFormatCategoricalDescriptionBuilder
Andreas Müller [Wed, 1 Feb 2023 18:57:26 +0000 (19:57 +0100)]
handle potential NPE in MicroFormatCategoricalDescriptionBuilder

19 months agoref #10232 add modifier handling to QuantitativeDataFormatter and DesciptionElementFo...
Andreas Müller [Wed, 1 Feb 2023 18:56:51 +0000 (19:56 +0100)]
ref #10232 add modifier handling to QuantitativeDataFormatter and DesciptionElementFormatterBase

19 months agoref #10232 fix issue in common name export
Andreas Müller [Wed, 1 Feb 2023 18:55:24 +0000 (19:55 +0100)]
ref #10232 fix issue in common name export

19 months agoref #9664 fix updateNomenclaturalCache() and updateCollectorCache() in Person
Andreas Müller [Mon, 30 Jan 2023 14:57:10 +0000 (15:57 +0100)]
ref #9664 fix updateNomenclaturalCache() and updateCollectorCache() in Person

19 months agoref #10232 finalize CommonNameExcelImport and some cleanup
Andreas Müller [Mon, 30 Jan 2023 14:08:52 +0000 (15:08 +0100)]
ref #10232 finalize CommonNameExcelImport and some cleanup

19 months agofix https in EditGeoServiceTest
Andreas Müller [Fri, 27 Jan 2023 07:42:03 +0000 (08:42 +0100)]
fix https in EditGeoServiceTest

19 months agoref #10232 first implementation for E+M finnish common name import
Andreas Müller [Tue, 24 Jan 2023 22:15:02 +0000 (23:15 +0100)]
ref #10232 first implementation for E+M finnish common name import

19 months agoref #10222 annotation ids and cleanup
Andreas Müller [Sat, 21 Jan 2023 00:07:16 +0000 (01:07 +0100)]
ref #10222 annotation ids and cleanup

19 months agoref #10222 change labels for TaxonBaseDto (fix)
Andreas Müller [Fri, 20 Jan 2023 23:37:34 +0000 (00:37 +0100)]
ref #10222 change labels for TaxonBaseDto (fix)

19 months agominor
Andreas Müller [Fri, 20 Jan 2023 23:20:57 +0000 (00:20 +0100)]
minor

19 months agoref #10222 add supplemental data (cont.) + change labels for TaxonBaseDto
Andreas Müller [Fri, 20 Jan 2023 23:20:24 +0000 (00:20 +0100)]
ref #10222 add supplemental data (cont.) + change labels for TaxonBaseDto

19 months agoref #10222 add supplemental data
Andreas Müller [Fri, 20 Jan 2023 22:10:40 +0000 (23:10 +0100)]
ref #10222 add supplemental data

19 months agoadd method to get uuid and abbrev titlecache for a set of uuids
Katja Luther [Fri, 20 Jan 2023 10:10:00 +0000 (11:10 +0100)]
add method to get uuid and abbrev titlecache for a set of uuids

19 months agoref #10205: fixing parseOriginalDataSetUri
Katja Luther [Thu, 19 Jan 2023 12:34:00 +0000 (13:34 +0100)]
ref #10205: fixing parseOriginalDataSetUri

19 months agoref #10205: using Jackson library for GBIF import
Katja Luther [Thu, 19 Jan 2023 12:34:00 +0000 (13:34 +0100)]
ref #10205: using Jackson library for GBIF import

19 months agoref #10222 add tagged text for typification (cont.)
Andreas Müller [Thu, 19 Jan 2023 00:11:47 +0000 (01:11 +0100)]
ref #10222 add tagged text for typification (cont.)

19 months agoref #10222 add tagged text for synonyms
Andreas Müller [Thu, 19 Jan 2023 00:08:33 +0000 (01:08 +0100)]
ref #10222 add tagged text for synonyms

19 months agocleanup
Andreas Müller [Thu, 19 Jan 2023 00:08:03 +0000 (01:08 +0100)]
cleanup

19 months agoref #10222 move TypedLabel to model (fix NPE when using label only)
Andreas Müller [Thu, 19 Jan 2023 00:07:40 +0000 (01:07 +0100)]
ref #10222 move TypedLabel to model (fix NPE when using label only)

19 months agocleanup TypedEntityReference constructors in cdmlib
Andreas Müller [Wed, 18 Jan 2023 23:32:06 +0000 (00:32 +0100)]
cleanup TypedEntityReference constructors in cdmlib

19 months agoref #10222 add tagged text for typification
Andreas Müller [Wed, 18 Jan 2023 23:00:10 +0000 (00:00 +0100)]
ref #10222 add tagged text for typification

19 months agoref #10222 enable message handling and add message for type designation formatting...
Andreas Müller [Wed, 18 Jan 2023 22:51:53 +0000 (23:51 +0100)]
ref #10222 enable message handling and add message for type designation formatting exceptions

19 months agoref #10222 rename ContainerDto.collection to items
Andreas Müller [Wed, 18 Jan 2023 22:33:33 +0000 (23:33 +0100)]
ref #10222 rename ContainerDto.collection to items

19 months agoref #10222 add agentlink to taxonNodeAgentRelDto
Andreas Müller [Wed, 18 Jan 2023 22:28:54 +0000 (23:28 +0100)]
ref #10222 add agentlink to taxonNodeAgentRelDto

19 months agoref #10222 use taggedText for taxon label for now and cleanup
Andreas Müller [Wed, 18 Jan 2023 22:18:39 +0000 (23:18 +0100)]
ref #10222 use taggedText for taxon label for now and cleanup

19 months agoref #10222 move TypedLabel to model (fix text data label handling) and cleanup
Andreas Müller [Wed, 18 Jan 2023 21:12:19 +0000 (22:12 +0100)]
ref #10222 move TypedLabel to model (fix text data label handling) and cleanup

19 months agoref #10222 first implementation for typification in TaxonPageDto
Andreas Müller [Wed, 18 Jan 2023 21:07:52 +0000 (22:07 +0100)]
ref #10222 first implementation for typification in TaxonPageDto

19 months agoref #10222 taxonnode agent relations to TaxonNodeDTO (fix) and doc
Andreas Müller [Wed, 18 Jan 2023 21:01:42 +0000 (22:01 +0100)]
ref #10222 taxonnode agent relations to TaxonNodeDTO (fix) and doc

19 months agoref #10222 move TypedLabel to model
Andreas Müller [Wed, 18 Jan 2023 21:00:13 +0000 (22:00 +0100)]
ref #10222 move TypedLabel to model

19 months agoref #10222 taxonnode agent relations to TaxonNodeDTO and doc
Andreas Müller [Wed, 18 Jan 2023 20:32:39 +0000 (21:32 +0100)]
ref #10222 taxonnode agent relations to TaxonNodeDTO and doc

19 months agoref #10222 add status and statusNote to TaxonNodeDTO (fix)
Andreas Müller [Wed, 18 Jan 2023 13:15:17 +0000 (14:15 +0100)]
ref #10222 add status and statusNote to TaxonNodeDTO (fix)

19 months agoref #10222 add status and statusNote to TaxonNodeDTO
Andreas Müller [Wed, 18 Jan 2023 10:49:02 +0000 (11:49 +0100)]
ref #10222 add status and statusNote to TaxonNodeDTO

19 months agoref #10222 first incomplete implementation of taxonPageDto
Andreas Müller [Tue, 17 Jan 2023 18:09:17 +0000 (19:09 +0100)]
ref #10222 first incomplete implementation of taxonPageDto

19 months agoref #10222 first incomplete implementation of synonymy (cont.)
Andreas Müller [Tue, 17 Jan 2023 13:46:05 +0000 (14:46 +0100)]
ref #10222 first incomplete implementation of synonymy (cont.)

19 months agoref #10222 first incomplete implementation of synonymy (cont.)
Andreas Müller [Mon, 16 Jan 2023 22:10:20 +0000 (23:10 +0100)]
ref #10222 first incomplete implementation of synonymy (cont.)

19 months agodo not add exceptions for name deletion a second time
Katja Luther [Mon, 16 Jan 2023 10:44:51 +0000 (11:44 +0100)]
do not add exceptions for name deletion a second time

19 months agocleanup
Andreas Müller [Sun, 15 Jan 2023 22:39:45 +0000 (23:39 +0100)]
cleanup

19 months agoref #10222 first incomplete implementation of synonymy
Andreas Müller [Sun, 15 Jan 2023 22:39:23 +0000 (23:39 +0100)]
ref #10222 first incomplete implementation of synonymy

19 months agoref #10222 handle count in Container
Andreas Müller [Wed, 11 Jan 2023 22:11:29 +0000 (23:11 +0100)]
ref #10222 handle count in Container

19 months agocleanup
Andreas Müller [Wed, 11 Jan 2023 22:06:41 +0000 (23:06 +0100)]
cleanup

19 months agoref #10222 first version of a taxon page dto framework (first TextData)
Andreas Müller [Wed, 11 Jan 2023 22:04:28 +0000 (23:04 +0100)]
ref #10222 first version of a taxon page dto framework (first TextData)

19 months agotest
k.luther [Wed, 11 Jan 2023 12:31:54 +0000 (13:31 +0100)]
test

19 months agominor
Katja Luther [Wed, 11 Jan 2023 11:15:09 +0000 (12:15 +0100)]
minor

19 months agoref #10222 first version of a taxon page dto framework (cont.)
Andreas Müller [Wed, 11 Jan 2023 06:51:24 +0000 (07:51 +0100)]
ref #10222 first version of a taxon page dto framework (cont.)

19 months agoref #10222 first version of a taxon page dto framework (cont.)
Andreas Müller [Tue, 10 Jan 2023 22:44:11 +0000 (23:44 +0100)]
ref #10222 first version of a taxon page dto framework (cont.)

19 months agoref #10222 first version of a taxon page dto framework
Andreas Müller [Mon, 9 Jan 2023 18:36:01 +0000 (19:36 +0100)]
ref #10222 first version of a taxon page dto framework

19 months agocleanup and javadoc
Andreas Müller [Mon, 9 Jan 2023 17:15:19 +0000 (18:15 +0100)]
cleanup and javadoc

20 months agounify database schemupdater packages
Andreas Müller [Sat, 7 Jan 2023 21:19:21 +0000 (22:19 +0100)]
unify database schemupdater packages

20 months agoref #6343, ref 6794 fix creation of OrderedTermVocabulary in imports
Andreas Müller [Fri, 6 Jan 2023 18:11:48 +0000 (19:11 +0100)]
ref #6343, ref 6794 fix creation of OrderedTermVocabulary in imports

20 months agoref #10201 additional update script for synonym type
Andreas Müller [Fri, 6 Jan 2023 17:02:38 +0000 (18:02 +0100)]
ref #10201 additional update script for synonym type

20 months agominor
Andreas Müller [Fri, 6 Jan 2023 17:01:24 +0000 (18:01 +0100)]
minor

20 months agoref #10072 remove file-appender from cdmlib-test log4j2-test
Andreas Müller [Fri, 6 Jan 2023 10:12:42 +0000 (11:12 +0100)]
ref #10072 remove file-appender from cdmlib-test log4j2-test

20 months agoref #10055 upgrade postgresql to 42.5.1 in cdmlib
Andreas Müller [Thu, 5 Jan 2023 19:49:47 +0000 (20:49 +0100)]
ref #10055 upgrade postgresql to 42.5.1 in cdmlib

20 months agoUpdating develop poms back to pre merge state
jenkins [Thu, 5 Jan 2023 16:29:40 +0000 (17:29 +0100)]
Updating develop poms back to pre merge state

20 months agoMerge branch 'master' into develop
jenkins [Thu, 5 Jan 2023 16:29:38 +0000 (17:29 +0100)]
Merge branch 'master' into develop

20 months agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 5 Jan 2023 16:29:37 +0000 (17:29 +0100)]
updating develop poms to master versions to avoid merge conflicts

20 months agoMerge branch 'release/5.35.0' 5.35.0
jenkins [Thu, 5 Jan 2023 16:29:31 +0000 (17:29 +0100)]
Merge branch 'release/5.35.0'

20 months agoupdating poms for branch'release/5.35.0' with non-snapshot versions
jenkins [Thu, 5 Jan 2023 16:16:30 +0000 (17:16 +0100)]
updating poms for branch'release/5.35.0' with non-snapshot versions

20 months agoupdating poms for 5.36.0-SNAPSHOT development
jenkins [Thu, 5 Jan 2023 13:41:55 +0000 (14:41 +0100)]
updating poms for 5.36.0-SNAPSHOT development

20 months agoref #10072 remove logging to file in cdmlib log4j2.xml -s origin/release/5.35.0
Andreas Müller [Thu, 5 Jan 2023 13:38:29 +0000 (14:38 +0100)]
ref #10072 remove logging to file in cdmlib log4j2.xml -s

20 months agojavadoc
Andreas Müller [Thu, 5 Jan 2023 13:22:26 +0000 (14:22 +0100)]
javadoc

20 months agoref #6407 add commented 3.x version to compiler plugin
Andreas Müller [Thu, 5 Jan 2023 11:13:30 +0000 (12:13 +0100)]
ref #6407 add commented 3.x version to compiler plugin

20 months agocleanup
Andreas Müller [Thu, 5 Jan 2023 11:11:11 +0000 (12:11 +0100)]
cleanup

20 months agoref #10214 rename CdmCacheBase to CdmPermanentCacheBase
Andreas Müller [Thu, 5 Jan 2023 00:05:42 +0000 (01:05 +0100)]
ref #10214 rename CdmCacheBase to CdmPermanentCacheBase

20 months agofix #10214 fix term (default) cache configuration handling
Andreas Müller [Wed, 4 Jan 2023 22:32:30 +0000 (23:32 +0100)]
fix #10214 fix term (default) cache configuration handling

20 months agocleanup
Andreas Müller [Wed, 4 Jan 2023 19:46:36 +0000 (20:46 +0100)]
cleanup

20 months agoref #10077 remove statistics setting from ehCache config as it is deprectated
Andreas Müller [Wed, 4 Jan 2023 18:59:47 +0000 (19:59 +0100)]
ref #10077 remove statistics setting from ehCache config as it is deprectated

Signed-off-by: Andreas Müller <a.mueller@bgbm.org>
20 months agoref #10201 fix dozer test for synonym type mapping
Andreas Müller [Wed, 4 Jan 2023 17:24:13 +0000 (18:24 +0100)]
ref #10201 fix dozer test for synonym type mapping

20 months agocleanup
Andreas Müller [Wed, 4 Jan 2023 15:08:53 +0000 (16:08 +0100)]
cleanup

20 months agojavadoc for TDWG ontology mapping classes
Andreas Müller [Wed, 4 Jan 2023 15:08:04 +0000 (16:08 +0100)]
javadoc for TDWG ontology mapping classes

20 months agotry to fix test running in suite (cont.)
Andreas Müller [Wed, 4 Jan 2023 12:27:34 +0000 (13:27 +0100)]
try to fix test running in suite (cont.)

20 months agotry to fix test running in suite
Andreas Müller [Wed, 4 Jan 2023 12:04:19 +0000 (13:04 +0100)]
try to fix test running in suite

20 months agocleanup
Andreas Müller [Wed, 4 Jan 2023 10:59:37 +0000 (11:59 +0100)]
cleanup

20 months agoref #10182 adding test to find out what the validation behavior is during load
Andreas Müller [Wed, 4 Jan 2023 10:55:22 +0000 (11:55 +0100)]
ref #10182 adding test to find out what the validation behavior is during load

20 months agoadd OccurrenceStatus to PermissionClass
Andreas Müller [Tue, 3 Jan 2023 21:25:06 +0000 (22:25 +0100)]
add OccurrenceStatus to PermissionClass

20 months agoadd DerivationEvent to PermissionClass
Andreas Müller [Tue, 3 Jan 2023 21:15:51 +0000 (22:15 +0100)]
add DerivationEvent to PermissionClass

20 months agoref #10196 fix findByTermType
Andreas Müller [Tue, 3 Jan 2023 14:54:27 +0000 (15:54 +0100)]
ref #10196 fix findByTermType

20 months agocleanup
Andreas Müller [Tue, 3 Jan 2023 14:54:00 +0000 (15:54 +0100)]
cleanup

20 months agocommit only
Andreas Müller [Tue, 3 Jan 2023 14:53:21 +0000 (15:53 +0100)]
commit only

20 months agojavadoc
Andreas Müller [Tue, 3 Jan 2023 11:29:36 +0000 (12:29 +0100)]
javadoc

20 months agoref #2506, ref #10182 fix clone method for DerivedUnit.status
Andreas Müller [Tue, 3 Jan 2023 11:27:28 +0000 (12:27 +0100)]
ref #2506, ref #10182  fix clone method for DerivedUnit.status

20 months agocleanup
Andreas Müller [Tue, 3 Jan 2023 11:26:38 +0000 (12:26 +0100)]
cleanup

20 months agoRevert " fix #3408, ref #9359 remove springmodules dependency by workaround in Abstra...
Andreas Müller [Sat, 31 Dec 2022 10:48:35 +0000 (11:48 +0100)]
Revert " fix #3408, ref #9359 remove springmodules dependency by workaround in AbstractOaiPmhController"

This reverts commit cbe13549e0a30b0dd4e3553cb48c7a34ead84e3b.

20 months agocleanup
Andreas Müller [Thu, 29 Dec 2022 11:12:50 +0000 (12:12 +0100)]
cleanup

20 months agoref #10216 fix classification test path
Andreas Müller [Tue, 27 Dec 2022 20:15:43 +0000 (21:15 +0100)]
ref #10216 fix classification test path

20 months agocleanup
Andreas Müller [Tue, 27 Dec 2022 18:07:05 +0000 (19:07 +0100)]
cleanup

20 months agocleanup and adapt spelling suggestion to spring-hibernate5 dao
Andreas Müller [Tue, 27 Dec 2022 15:42:26 +0000 (16:42 +0100)]
cleanup and adapt spelling suggestion to spring-hibernate5 dao