a.bukhman [Thu, 27 Aug 2009 15:26:49 +0000 (15:26 +0000)]
Update Endnote Import
a.bukhman [Thu, 27 Aug 2009 15:23:35 +0000 (15:23 +0000)]
Endnote import update
a.bukhman [Thu, 27 Aug 2009 13:49:56 +0000 (13:49 +0000)]
bugfix in Endnote import
a.babadshanjan [Thu, 27 Aug 2009 13:08:49 +0000 (13:08 +0000)]
Minor
ben.clark [Wed, 26 Aug 2009 21:54:30 +0000 (21:54 +0000)]
Implemented Grouping Criteria method for ICdmEntityDao, including group by count and group by year / month / day for dateTime fields
Andreas Müller [Wed, 26 Aug 2009 20:23:32 +0000 (20:23 +0000)]
minor
Andreas Müller [Wed, 26 Aug 2009 18:23:11 +0000 (18:23 +0000)]
NormalExplicit renamed
Andreas Müller [Wed, 26 Aug 2009 18:03:25 +0000 (18:03 +0000)]
minor
Andreas Müller [Wed, 26 Aug 2009 18:00:47 +0000 (18:00 +0000)]
minor
Andreas Müller [Wed, 26 Aug 2009 17:36:52 +0000 (17:36 +0000)]
new images and bugfixing for palmae import
Andreas Müller [Wed, 26 Aug 2009 17:34:39 +0000 (17:34 +0000)]
minor
a.bukhman [Wed, 26 Aug 2009 14:06:26 +0000 (14:06 +0000)]
Update Endnote Import
a.bukhman [Wed, 26 Aug 2009 13:48:55 +0000 (13:48 +0000)]
Update Endnote Import
Andreas Müller [Wed, 26 Aug 2009 13:44:03 +0000 (13:44 +0000)]
minor
Andreas Müller [Wed, 26 Aug 2009 12:19:53 +0000 (12:19 +0000)]
additional specimen type status for TaxonX import
a.babadshanjan [Wed, 26 Aug 2009 12:19:08 +0000 (12:19 +0000)]
Cichorieae image import: Consider taxonomic tree if multiple taxa found for same taxon name
Andreas Müller [Wed, 26 Aug 2009 12:18:26 +0000 (12:18 +0000)]
isosyntype added
Andreas Müller [Wed, 26 Aug 2009 11:42:37 +0000 (11:42 +0000)]
minor
a.bukhman [Wed, 26 Aug 2009 10:53:05 +0000 (10:53 +0000)]
Update Endnote Import
Andreas Müller [Wed, 26 Aug 2009 10:45:51 +0000 (10:45 +0000)]
minor
a.bukhman [Wed, 26 Aug 2009 10:44:13 +0000 (10:44 +0000)]
Update Endnote Import
Andreas Müller [Wed, 26 Aug 2009 10:43:55 +0000 (10:43 +0000)]
new taxonx files
a.bukhman [Wed, 26 Aug 2009 10:21:10 +0000 (10:21 +0000)]
Update Endnote Import
n.hoffmann [Wed, 26 Aug 2009 10:20:05 +0000 (10:20 +0000)]
finetuning match mechanism
Andreas Müller [Tue, 25 Aug 2009 14:55:55 +0000 (14:55 +0000)]
Endnote import update
Andreas Müller [Tue, 25 Aug 2009 14:54:25 +0000 (14:54 +0000)]
Endnote Import
Andreas Müller [Tue, 25 Aug 2009 11:03:10 +0000 (11:03 +0000)]
Endnote test
Andreas Müller [Tue, 25 Aug 2009 11:01:17 +0000 (11:01 +0000)]
Endnote test file
Andreas Müller [Tue, 25 Aug 2009 10:55:58 +0000 (10:55 +0000)]
Endnote import
a.babadshanjan [Mon, 24 Aug 2009 13:19:49 +0000 (13:19 +0000)]
Test data for Excel import
a.babadshanjan [Mon, 24 Aug 2009 13:19:47 +0000 (13:19 +0000)]
Test data for Excel import
a.babadshanjan [Mon, 24 Aug 2009 11:25:36 +0000 (11:25 +0000)]
Missing import statement added
a.babadshanjan [Mon, 24 Aug 2009 09:25:22 +0000 (09:25 +0000)]
Test data for Excel import
h.fradin [Wed, 19 Aug 2009 15:47:30 +0000 (15:47 +0000)]
Modification of building of SDD Representation element
h.fradin [Wed, 19 Aug 2009 15:44:52 +0000 (15:44 +0000)]
Modification of the import of SDD Representation element after model changes (DefinedTermBase and Media becoming IdentifiableEntity)
a.babadshanjan [Wed, 19 Aug 2009 15:14:05 +0000 (15:14 +0000)]
Fixed JAXB test
a.babadshanjan [Wed, 19 Aug 2009 11:27:10 +0000 (11:27 +0000)]
Fix in JAXB annotations, typo
Andreas Müller [Tue, 18 Aug 2009 23:59:56 +0000 (23:59 +0000)]
changes to TaxonX mods import and length of description
Andreas Müller [Tue, 18 Aug 2009 23:59:18 +0000 (23:59 +0000)]
minor
Andreas Müller [Tue, 18 Aug 2009 23:58:34 +0000 (23:58 +0000)]
increased length for LanguageString texts ->64K
Andreas Müller [Tue, 18 Aug 2009 21:13:59 +0000 (21:13 +0000)]
minor
Andreas Müller [Tue, 18 Aug 2009 19:04:29 +0000 (19:04 +0000)]
minor
Andreas Müller [Tue, 18 Aug 2009 16:30:18 +0000 (16:30 +0000)]
bugfixes on cdm.dll in io layer
Andreas Müller [Tue, 18 Aug 2009 16:13:07 +0000 (16:13 +0000)]
TaxonXNomenclatureImport adapted to new INameService
h.fradin [Tue, 18 Aug 2009 16:11:55 +0000 (16:11 +0000)]
Impact of changes to the model: new classes for keys, DefinedTermBase and Media extends IdentifiableEntity
Andreas Müller [Tue, 18 Aug 2009 16:02:44 +0000 (16:02 +0000)]
Changes on service layer tests and on ordering in TaxonServiceImpl.findTaxaAndNames()
Andreas Müller [Tue, 18 Aug 2009 16:01:10 +0000 (16:01 +0000)]
ignore cacheStrategy == null on identifable entity
Andreas Müller [Tue, 18 Aug 2009 15:33:48 +0000 (15:33 +0000)]
Deleting empty compareTo methods from DefinedTerms
Andreas Müller [Tue, 18 Aug 2009 15:20:17 +0000 (15:20 +0000)]
minor
h.fradin [Tue, 18 Aug 2009 15:09:09 +0000 (15:09 +0000)]
Impact of model changes: keys, DefinedTermBase and Media extends IdentifiableEntity
Andreas Müller [Tue, 18 Aug 2009 14:48:02 +0000 (14:48 +0000)]
last bugfixes for tests in persistence
Andreas Müller [Tue, 18 Aug 2009 14:13:17 +0000 (14:13 +0000)]
further test bugfixes
Andreas Müller [Tue, 18 Aug 2009 14:04:00 +0000 (14:04 +0000)]
further bugfixes on cdm.ddl test dbscript
Andreas Müller [Tue, 18 Aug 2009 13:50:42 +0000 (13:50 +0000)]
bugfixes on cdm.ddl test dbscript
Andreas Müller [Tue, 18 Aug 2009 13:50:19 +0000 (13:50 +0000)]
bugfixes on dataset.dtd
Andreas Müller [Tue, 18 Aug 2009 13:14:11 +0000 (13:14 +0000)]
Changed memory size for surefire tests in parent pom to 512M
Andreas Müller [Tue, 18 Aug 2009 09:04:29 +0000 (09:04 +0000)]
further ddl bugfixes
Andreas Müller [Mon, 17 Aug 2009 21:08:44 +0000 (21:08 +0000)]
bugfix in cdm.dll in persistence
Andreas Müller [Mon, 17 Aug 2009 21:07:59 +0000 (21:07 +0000)]
minor
Andreas Müller [Mon, 17 Aug 2009 18:27:52 +0000 (18:27 +0000)]
bug fixing in Test DataSet etc.
Andreas Müller [Mon, 17 Aug 2009 18:26:01 +0000 (18:26 +0000)]
minor
h.fradin [Mon, 17 Aug 2009 18:07:04 +0000 (18:07 +0000)]
Addition of tables corresponding to new objects WorkingSet, MultiAccessKey, PolytomousKey, renaming of IdentificationKey to MediaKey and addition of new attributes to FeatureNode
h.fradin [Mon, 17 Aug 2009 15:44:31 +0000 (15:44 +0000)]
Addition of new FeatureNode attributes
Andreas Müller [Mon, 17 Aug 2009 14:52:45 +0000 (14:52 +0000)]
protected title cache = false for test files in persistence
Andreas Müller [Mon, 17 Aug 2009 14:19:24 +0000 (14:19 +0000)]
minor
Andreas Müller [Mon, 17 Aug 2009 14:12:45 +0000 (14:12 +0000)]
changes to test dll in service layer
Andreas Müller [Mon, 17 Aug 2009 14:03:32 +0000 (14:03 +0000)]
changes to test dll in persistence
Andreas Müller [Mon, 17 Aug 2009 13:47:09 +0000 (13:47 +0000)]
bugfixes for mapping of model changes (JoinTable bug) - MediaKey
Andreas Müller [Mon, 17 Aug 2009 13:42:06 +0000 (13:42 +0000)]
bug in last commit
Andreas Müller [Mon, 17 Aug 2009 13:40:19 +0000 (13:40 +0000)]
bugfixes for mapping of model changes (JoinTable bug) - MultiAccessKey
Andreas Müller [Mon, 17 Aug 2009 13:34:45 +0000 (13:34 +0000)]
bugfixes for mapping of model changes (JoinTable bug)
Andreas Müller [Mon, 17 Aug 2009 13:23:29 +0000 (13:23 +0000)]
minor
Andreas Müller [Mon, 17 Aug 2009 12:47:19 +0000 (12:47 +0000)]
minor
h.fradin [Mon, 17 Aug 2009 12:45:38 +0000 (12:45 +0000)]
Removal of untyped expression
Andreas Müller [Mon, 17 Aug 2009 12:44:26 +0000 (12:44 +0000)]
bugfixing for new model changes (comparable for OrderedTermBase and identifiableEntity)
Andreas Müller [Mon, 17 Aug 2009 12:43:42 +0000 (12:43 +0000)]
minor
Andreas Müller [Mon, 17 Aug 2009 12:43:01 +0000 (12:43 +0000)]
minor
h.fradin [Mon, 17 Aug 2009 12:31:19 +0000 (12:31 +0000)]
Impact of new model changes: new classes and renaming
ben.clark [Mon, 17 Aug 2009 11:01:26 +0000 (11:01 +0000)]
Created ICollectionService / CollectionServiceImpl
ben.clark [Mon, 17 Aug 2009 11:00:44 +0000 (11:00 +0000)]
exposed free-text searching of Collection instances
h.fradin [Mon, 17 Aug 2009 09:54:28 +0000 (09:54 +0000)]
CHANGES TO THE CDMLIB-MODEL: Media and DefinedTermBase become IdentifiableEntity, new classes to represent descriptive dataset and keys
1. Media extends IdentifiableEntity
- addition of a ComparableTo method
- deletion of the redundant attribute 'rights'
2. TermBase extends IdentifiableEntity
There was redundancy with 'implements Comparable<T>' in OrderedTermBase and 'implements Comparable<IdentifiableEntity>' in IdentifiableIdentity.
- I erased « implements Comparable<T> » dans OrderedTermBase
- I completed it with a 'ghost' method CompareTo(Object)
public int compareTo(Object o) {
return 0;
}
- I added the same 'ghost' CompareTo(Object) method to the following classes: BibtexEntryType, DerivationEventType, PreservationMethod, RightsTerm, NamedAreaType, ReferenceSystem, Feature, FeatureTree, MeasurementUnit, StatisticalMeasure, TextFormat, AnnotationType, ExtensionType, Language, MarkerType, TermVocabulary, InstitutionType
3. adding OnlyApplicableIf / InapplicableIf to FeatureNode
private Set<State> onlyApplicableIf = new HashSet<State>();
private Set<State> inapplicableIf = new HashSet<State>();
with the associated get, add, remove methods.
These attributes are not direct equivalent for onlyApplicableIf and inapplicableIf in SDD as they are attached directly to the child feature rather than the parent feature, which allow having different inapplicability rules for each child feature.
4. Creation of the WorkingSet class
public class WorkingSet<S extends DescriptionBase> extends AnnotatableEntity {
…
private Set<Representation> representations = new HashSet<Representation>();
...
private FeatureTree descriptiveSystem;
...
private Set<S> descriptions = new HashSet<S>();
…
}
5. Completion of IidentificationKey interface
public interface IIdentificationKey {
public Set<NamedArea> getGeographicalScope();
public void addGeographicalScope(NamedArea geographicalScope);
public void removeGeographicalScope(NamedArea geographicalScope);
public Set<Taxon> getTaxonomicScope();
public void addTaxonomicScope(Taxon taxon);
public void removeTaxonomicScope(Taxon taxon);
public Set<Scope> getScopeRestrictions();
public Set<Taxon> getCoveredTaxa();
public void addCoveredTaxon(Taxon taxon);
public void removeCoveredTaxon(Taxon taxon);
}
I removed 'representations' as MultiAccessKey and PolytomousKey inherit it from their hierarchy. I added it to MediaKey (former IdentificationKey) under the name of keyRepresentations in order not to mix with the media representations.
6. Modification of IdentificationKey in accordance (and renaming it to MediaKey with all the necessary modifications in concerned classes)
public class MediaKey extends Media implements IIdentificationKey{
…
private Set<Taxon> coveredTaxa = new HashSet<Taxon>();
…
private Set<NamedArea> geographicalScope = new HashSet<NamedArea>();
…
private Set<Taxon> taxonomicScope = new HashSet<Taxon>();
…
private Set<Scope> scopeRestrictions = new HashSet<Scope>();
…
private Set<Representation> keyRepresentations = new HashSet<Representation>();
…
}
7. Creation of the class MultiAccessKey
public class MultiAccessKey extends WorkingSet implements IIdentificationKey{
...
private Set<Taxon> coveredTaxa = new HashSet<Taxon>();
...
private Set<Taxon> taxonomicScope = new HashSet<Taxon>();
...
private Set<NamedArea> geographicalScope = new HashSet<NamedArea>();
...
private Set<Scope> scopeRestrictions = new HashSet<Scope>();
}
8. Creation of PolytomousKey
public class PolytomousKey extends FeatureTree implements IIdentificationKey{
...
private Set<Taxon> coveredTaxa = new HashSet<Taxon>();
...
private Set<Taxon> taxonomicScope = new HashSet<Taxon>();
...
private Set<NamedArea> geographicalScope = new HashSet<NamedArea>();
...
private Set<Scope> scopeRestrictions = new HashSet<Scope>();
}
9. Addition of the attribute 'result', 'question' and 'taxon' to FeatureNode so that a FeatureTree can store the identification path in the case of a polytomous key.
private DescriptionElementBase result;
private Set<Representation> questions = new HashSet<Representation>();
private Taxon taxon;
Andreas Müller [Mon, 17 Aug 2009 08:36:33 +0000 (08:36 +0000)]
NameParser improvement, name and reference has the same author
ben.clark [Fri, 14 Aug 2009 16:12:42 +0000 (16:12 +0000)]
Corrected a couple of bugs
ben.clark [Fri, 14 Aug 2009 16:12:09 +0000 (16:12 +0000)]
correcting minor problem with jaxb annotation
n.hoffmann [Fri, 14 Aug 2009 14:37:12 +0000 (14:37 +0000)]
formatted parser documentation for better readability
Andreas Müller [Fri, 14 Aug 2009 09:41:14 +0000 (09:41 +0000)]
taxonNameBase adapted for matching
Andreas Müller [Fri, 14 Aug 2009 09:32:01 +0000 (09:32 +0000)]
minor
Andreas Müller [Fri, 14 Aug 2009 09:28:31 +0000 (09:28 +0000)]
deleted group matcher
Andreas Müller [Fri, 14 Aug 2009 09:27:36 +0000 (09:27 +0000)]
minor
Andreas Müller [Fri, 14 Aug 2009 09:22:12 +0000 (09:22 +0000)]
updates for match strategy in persistence
Andreas Müller [Fri, 14 Aug 2009 09:21:41 +0000 (09:21 +0000)]
updates for match strategy in model
ben.clark [Fri, 14 Aug 2009 08:16:27 +0000 (08:16 +0000)]
Added free-text search methods to name & occurrence services & removed redundant method from UserService
ben.clark [Fri, 14 Aug 2009 08:15:43 +0000 (08:15 +0000)]
Added free-text search methods to name & occurrence DAO's
ben.clark [Fri, 14 Aug 2009 08:14:49 +0000 (08:14 +0000)]
Added annotations to support free-text searching of occurrences & related entities
n.hoffmann [Thu, 13 Aug 2009 08:54:42 +0000 (08:54 +0000)]
added a working source feature, so sources can be omitted from binary releases
n.hoffmann [Thu, 13 Aug 2009 08:52:18 +0000 (08:52 +0000)]
deleting non working attempts on a source feature
n.hoffmann [Thu, 13 Aug 2009 08:50:42 +0000 (08:50 +0000)]
n.hoffmann [Thu, 13 Aug 2009 08:46:23 +0000 (08:46 +0000)]
added a working source feature, so sources can be omitted from binary releases
n.hoffmann [Thu, 13 Aug 2009 08:44:42 +0000 (08:44 +0000)]
Initial import.
a.babadshanjan [Wed, 12 Aug 2009 15:55:23 +0000 (15:55 +0000)]
JAXB import update