n.hoffmann [Tue, 26 Jan 2010 17:48:11 +0000 (17:48 +0000)]
fixes #1407
n.hoffmann [Tue, 26 Jan 2010 17:39:30 +0000 (17:39 +0000)]
n.hoffmann [Mon, 25 Jan 2010 14:09:46 +0000 (14:09 +0000)]
Latest TaxonX files for palms import added
ben.clark [Fri, 22 Jan 2010 16:24:52 +0000 (16:24 +0000)]
Added WorkingSetDao & Service
ben.clark [Fri, 22 Jan 2010 16:24:25 +0000 (16:24 +0000)]
Added WorkingSetDao & Service
ben.clark [Fri, 22 Jan 2010 16:23:34 +0000 (16:23 +0000)]
Changes to NonViralName.getTitleCache()
n.hoffmann [Fri, 22 Jan 2010 14:34:08 +0000 (14:34 +0000)]
getMatchMode() in DefaultMatchStrategy is now failsafe
n.hoffmann [Thu, 21 Jan 2010 19:30:13 +0000 (19:30 +0000)]
moved functionality from editor to library
n.hoffmann [Thu, 21 Jan 2010 10:34:57 +0000 (10:34 +0000)]
Andreas Kohlbecker [Wed, 20 Jan 2010 12:56:21 +0000 (12:56 +0000)]
shorter timeout for metadata service
Andreas Kohlbecker [Tue, 19 Jan 2010 20:29:22 +0000 (20:29 +0000)]
mini fix
Andreas Kohlbecker [Tue, 19 Jan 2010 16:44:54 +0000 (16:44 +0000)]
allowing to write
n.hoffmann [Tue, 19 Jan 2010 15:18:15 +0000 (15:18 +0000)]
FeatureTreeService now returns a default FeatureTree when no tree is in database. Testing it with portal now.
ben.clark [Sun, 17 Jan 2010 19:39:07 +0000 (19:39 +0000)]
Added constraints to Taxon.synonymRelations, Synonym.synonymRelations, and SynonymRelationship.relatedFrom & SynonymRelationship.relatedTo to mark orphaned synonyms as invalid. [https://dev.e-taxonomy.eu/trac/ticket/1347]
Also, added constraint such that two accepted names or an accepted name and a synonym with the same sec reference and the same name are invalid.
ben.clark [Sun, 17 Jan 2010 19:38:50 +0000 (19:38 +0000)]
Added constraints to Taxon.synonymRelations, Synonym.synonymRelations, and SynonymRelationship.relatedFrom & SynonymRelationship.relatedTo to mark orphaned synonyms as invalid. [https://dev.e-taxonomy.eu/trac/ticket/1347]
Also, added constraint such that two accepted names or an accepted name and a synonym with the same sec reference and the same name are invalid.
m.venin [Fri, 15 Jan 2010 16:19:18 +0000 (16:19 +0000)]
Trace
Andreas Kohlbecker [Fri, 15 Jan 2010 16:14:54 +0000 (16:14 +0000)]
Trace v2
Andreas Kohlbecker [Fri, 15 Jan 2010 16:10:36 +0000 (16:10 +0000)]
Trace
Andreas Kohlbecker [Fri, 15 Jan 2010 16:07:01 +0000 (16:07 +0000)]
test commit
Katja Luther [Fri, 15 Jan 2010 12:24:51 +0000 (12:24 +0000)]
Katja Luther [Fri, 15 Jan 2010 12:23:11 +0000 (12:23 +0000)]
Katja Luther [Fri, 15 Jan 2010 12:22:44 +0000 (12:22 +0000)]
in xml file taxonnode is referenced by id
#1277 jaxb import
Katja Luther [Fri, 15 Jan 2010 12:21:23 +0000 (12:21 +0000)]
#1277 jaxb import, set id to @XmlTransient
Katja Luther [Fri, 15 Jan 2010 12:20:12 +0000 (12:20 +0000)]
#1277 jaxb import
em.lee [Fri, 15 Jan 2010 11:11:03 +0000 (11:11 +0000)]
Added isDatabaseSchemaCompatible().
em.lee [Fri, 15 Jan 2010 11:10:38 +0000 (11:10 +0000)]
Added isDatabaseSchemaCompatible().
ben.clark [Wed, 13 Jan 2010 16:52:31 +0000 (16:52 +0000)]
Corrected bug in AuditEventDao
Andreas Kohlbecker [Wed, 13 Jan 2010 12:01:35 +0000 (12:01 +0000)]
management service (/manager/datasources/*) ( and management page (/index.jsp)
Andreas Kohlbecker [Wed, 13 Jan 2010 11:59:31 +0000 (11:59 +0000)]
improving datasource management
Katja Luther [Wed, 13 Jan 2010 10:46:52 +0000 (10:46 +0000)]
Katja Luther [Wed, 13 Jan 2010 10:46:31 +0000 (10:46 +0000)]
Katja Luther [Wed, 13 Jan 2010 10:46:22 +0000 (10:46 +0000)]
Katja Luther [Wed, 13 Jan 2010 10:38:59 +0000 (10:38 +0000)]
new test for the delete method of TaxonNameDao
Katja Luther [Wed, 13 Jan 2010 10:31:12 +0000 (10:31 +0000)]
implement the delete method, to delete the refering taxonbases #1390
ben.clark [Tue, 12 Jan 2010 15:54:28 +0000 (15:54 +0000)]
Added protected setter methods to Synonym.synonymRelations and Taxon.relationsToThisTaxon to allow bean initialization
em.lee [Tue, 12 Jan 2010 13:45:50 +0000 (13:45 +0000)]
#1279
em.lee [Tue, 12 Jan 2010 13:45:22 +0000 (13:45 +0000)]
#1279
Andreas Kohlbecker [Tue, 12 Jan 2010 08:59:55 +0000 (08:59 +0000)]
minor change
ben.clark [Mon, 11 Jan 2010 16:17:54 +0000 (16:17 +0000)]
fixed bug in listDescriptions
ben.clark [Mon, 11 Jan 2010 16:08:25 +0000 (16:08 +0000)]
Updated cascade sematics for determinations
Katja Luther [Mon, 11 Jan 2010 14:28:03 +0000 (14:28 +0000)]
#1390
Katja Luther [Mon, 11 Jan 2010 14:15:03 +0000 (14:15 +0000)]
#1390
Katja Luther [Mon, 11 Jan 2010 14:14:52 +0000 (14:14 +0000)]
#1390
em.lee [Fri, 8 Jan 2010 16:45:47 +0000 (16:45 +0000)]
Preparatory work for ticket #1347.
em.lee [Fri, 8 Jan 2010 16:45:21 +0000 (16:45 +0000)]
Preparatory work for ticket #1347.
em.lee [Fri, 8 Jan 2010 16:44:56 +0000 (16:44 +0000)]
Preparatory work for ticket #1347.
n.hoffmann [Fri, 8 Jan 2010 16:41:56 +0000 (16:41 +0000)]
fixes #1365 and #1366
ben.clark [Fri, 8 Jan 2010 12:40:46 +0000 (12:40 +0000)]
Allowed replace(T x, T y) to accept null for the second argument and globally replace x with null or remove x from collections
ben.clark [Thu, 7 Jan 2010 22:02:15 +0000 (22:02 +0000)]
Altered ReferringObjectMetadataFactoryImpl to exclude bidirectional relationships where the replaced entity is the "owner" of the related entity (i.e. the relationship is mapped by @OneToMany & mappedBy != null) since those kind of relationships don't make sense in the context of a global replace method.
n.hoffmann [Thu, 7 Jan 2010 10:52:39 +0000 (10:52 +0000)]
Implemented a new method to return taxon relationships that are between two taxa.
n.hoffmann [Thu, 7 Jan 2010 10:42:38 +0000 (10:42 +0000)]
fixes #1357
ben.clark [Wed, 6 Jan 2010 23:10:30 +0000 (23:10 +0000)]
Updated ICdmEntityDao replace(T x, T y) and refresh(T t, LockMode lockMode, List<String> propertyPaths) and added methods to IAnnotationDao
ben.clark [Wed, 6 Jan 2010 23:09:17 +0000 (23:09 +0000)]
Updated ICdmEntityDao replace(T x, T y) and refresh(T t, LockMode lockMode, List<String> propertyPaths) and added methods to IAnnotationDao
em.lee [Tue, 5 Jan 2010 15:23:48 +0000 (15:23 +0000)]
On behalf of Niels: Check for multiple parents changed in addParentChild()
n.hoffmann [Tue, 5 Jan 2010 14:52:10 +0000 (14:52 +0000)]
fixes #1343
n.hoffmann [Mon, 4 Jan 2010 12:35:45 +0000 (12:35 +0000)]
fixes #1022
n.hoffmann [Mon, 4 Jan 2010 12:23:58 +0000 (12:23 +0000)]
fixes an issue with bulk adding of taxon nodes to a taxonomic tree
ben.clark [Wed, 23 Dec 2009 16:03:28 +0000 (16:03 +0000)]
ReferringObjectMetadata now queries higher up the hierarchy of classes to obtain a reference to a property
ben.clark [Tue, 22 Dec 2009 19:19:29 +0000 (19:19 +0000)]
Added public T replace(T x, T y) to ICdmEntityDao, implementation and tests
ben.clark [Tue, 22 Dec 2009 19:16:09 +0000 (19:16 +0000)]
Added public T replace(T x, T y) to ICdmEntityDao, implementation and tests
ben.clark [Tue, 22 Dec 2009 19:15:14 +0000 (19:15 +0000)]
Added CascadeType.MERGE, CascadeType.DELETE, CascadeType.DELETE_ORPHAN
ben.clark [Mon, 21 Dec 2009 15:15:57 +0000 (15:15 +0000)]
Added an IIdentificationKeyDao to query across all identification key types
ben.clark [Mon, 21 Dec 2009 15:09:06 +0000 (15:09 +0000)]
Added an IIdentificationKeyDao to query across all identification key types
ben.clark [Mon, 21 Dec 2009 15:08:18 +0000 (15:08 +0000)]
Added an IIdentificationKeyDao to query across all identification key types
ben.clark [Mon, 21 Dec 2009 13:42:42 +0000 (13:42 +0000)]
Added merge(T t, LockMode lockmode) and refresh(T t, LockMode lockmode) to allow developers to bypass the session & second-level cache (useful in some instances)
ben.clark [Mon, 21 Dec 2009 13:42:13 +0000 (13:42 +0000)]
Added merge(T t, LockMode lockmode) and refresh(T t, LockMode lockmode) to allow developers to bypass the session & second-level cache (useful in some instances)
ben.clark [Mon, 21 Dec 2009 13:40:01 +0000 (13:40 +0000)]
Added CascadeType.MERGE to some relationships
Andreas Müller [Sun, 20 Dec 2009 23:43:39 +0000 (23:43 +0000)]
link Taraxacum to Cichorieae fixed
Andreas Müller [Sun, 20 Dec 2009 00:00:54 +0000 (00:00 +0000)]
minor bugfix
Andreas Müller [Sat, 19 Dec 2009 23:59:28 +0000 (23:59 +0000)]
minor changes to palmaeActivator and postImportUpdater
Andreas Müller [Sat, 19 Dec 2009 23:54:21 +0000 (23:54 +0000)]
Palmae citations import -> implementation
Andreas Müller [Sat, 19 Dec 2009 23:53:11 +0000 (23:53 +0000)]
Bugfixes and improvements for the tcs rdf import (palmae citations)
ben.clark [Fri, 18 Dec 2009 10:48:32 +0000 (10:48 +0000)]
Removed unnecessary print statement
ben.clark [Fri, 18 Dec 2009 10:35:43 +0000 (10:35 +0000)]
Refactored service layer to reflect changes in search methods lower down, and moved @Transactional annotations to concrete classes
ben.clark [Fri, 18 Dec 2009 10:33:28 +0000 (10:33 +0000)]
Refactored free text search to re-use the same code for all identifiable entities. Switched to StandardAnalyzer to include indexing of numbers. Removed redundant code from taxonDao.delete() method (as included entities deleted using hibernate's cascade method)
ben.clark [Fri, 18 Dec 2009 09:15:25 +0000 (09:15 +0000)]
TermBase and descendants indexed using hibernate search
ben.clark [Fri, 18 Dec 2009 09:08:15 +0000 (09:08 +0000)]
MetaDataFactory returned null for non JPEG, non TIFF images, returning ImageMetaData instead
Andreas Müller [Thu, 17 Dec 2009 22:09:14 +0000 (22:09 +0000)]
bug in arecaceae.rdf (tn:hasName instead of tc:hasName)
Andreas Müller [Thu, 17 Dec 2009 21:58:47 +0000 (21:58 +0000)]
bug in arecaceae.rdf (tn:TaxonName instead of tn:hasName)
Katja Luther [Wed, 16 Dec 2009 15:30:25 +0000 (15:30 +0000)]
Katja Luther [Wed, 16 Dec 2009 14:57:53 +0000 (14:57 +0000)]
Katja Luther [Wed, 16 Dec 2009 14:55:54 +0000 (14:55 +0000)]
Katja Luther [Wed, 16 Dec 2009 14:42:30 +0000 (14:42 +0000)]
removed the features moved to NameFeature (#1042)
Katja Luther [Wed, 16 Dec 2009 14:15:13 +0000 (14:15 +0000)]
new vocabulary NameFeature #1042
Katja Luther [Tue, 15 Dec 2009 13:16:29 +0000 (13:16 +0000)]
removed some System.err.println()...
Katja Luther [Tue, 15 Dec 2009 13:13:38 +0000 (13:13 +0000)]
fix of ticket #1344
Katja Luther [Tue, 15 Dec 2009 10:41:08 +0000 (10:41 +0000)]
changes to display images on genus pages
n.hoffmann [Fri, 11 Dec 2009 16:43:13 +0000 (16:43 +0000)]
solved an issue that was connected to #1296 and fixes #1337
Andreas Kohlbecker [Fri, 11 Dec 2009 11:08:35 +0000 (11:08 +0000)]
setting ContentType
f.revilla [Fri, 11 Dec 2009 09:18:33 +0000 (09:18 +0000)]
New line added in the console when the script is executed
n.hoffmann [Thu, 10 Dec 2009 12:01:19 +0000 (12:01 +0000)]
minor
Katja Luther [Thu, 10 Dec 2009 11:07:30 +0000 (11:07 +0000)]
n.hoffmann [Wed, 9 Dec 2009 17:37:36 +0000 (17:37 +0000)]
fixes #1296
n.hoffmann [Wed, 9 Dec 2009 16:31:54 +0000 (16:31 +0000)]
fixed a bug that occurred when executing operations on taxon nodes on root level
n.hoffmann [Wed, 9 Dec 2009 16:19:52 +0000 (16:19 +0000)]
fixed a bug that occurred when executing operations on taxon nodes on root level
Katja Luther [Wed, 9 Dec 2009 13:07:21 +0000 (13:07 +0000)]
Katja Luther [Wed, 9 Dec 2009 13:07:03 +0000 (13:07 +0000)]
Katja Luther [Wed, 9 Dec 2009 13:06:47 +0000 (13:06 +0000)]
Katja Luther [Wed, 9 Dec 2009 13:05:51 +0000 (13:05 +0000)]
Katja Luther [Wed, 9 Dec 2009 13:03:38 +0000 (13:03 +0000)]