Andreas Müller [Wed, 18 Dec 2013 10:43:56 +0000 (10:43 +0000)]
Bug fix for DnaSample record basis
Andreas Müller [Wed, 18 Dec 2013 00:21:02 +0000 (00:21 +0000)]
minor changes (remove logging of missing classification)
Andreas Kohlbecker [Tue, 17 Dec 2013 19:12:36 +0000 (19:12 +0000)]
implementing third rule for #3904 (EuroMed: Implement filtering rules for Distributions)
Andreas Kohlbecker [Tue, 17 Dec 2013 17:39:56 +0000 (17:39 +0000)]
fixing lazy init exception
Andreas Kohlbecker [Mon, 16 Dec 2013 17:00:55 +0000 (17:00 +0000)]
fixing init strategy
Andreas Kohlbecker [Mon, 16 Dec 2013 15:02:53 +0000 (15:02 +0000)]
removing @Override for compatibility with java 1.6
Andreas Kohlbecker [Mon, 16 Dec 2013 14:23:08 +0000 (14:23 +0000)]
fixing return type of getParentLoger method in CdmDataSourceBase for java 1.7
Patric Plitzner [Mon, 16 Dec 2013 14:06:49 +0000 (14:06 +0000)]
- fixed mvn compile error with using java.util.logging.Logger
Andreas Müller [Mon, 16 Dec 2013 13:36:14 +0000 (13:36 +0000)]
add FullCoverageDataGenerator
Andreas Müller [Mon, 16 Dec 2013 13:35:18 +0000 (13:35 +0000)]
javadoc corrections
Andreas Müller [Mon, 16 Dec 2013 13:34:29 +0000 (13:34 +0000)]
change exception handling and add method to be compliant with Java 7.x and JDBC 4.1
Andreas Müller [Mon, 16 Dec 2013 13:29:42 +0000 (13:29 +0000)]
fix unhandled filePath for H2 databases
Andreas Müller [Mon, 16 Dec 2013 11:36:08 +0000 (11:36 +0000)]
minor
Patric Plitzner [Wed, 11 Dec 2013 10:44:37 +0000 (10:44 +0000)]
- changed parameter of getFieldUnits to UUID
Andreas Kohlbecker [Tue, 10 Dec 2013 15:25:58 +0000 (15:25 +0000)]
enabling xsl for statistics also
Patric Plitzner [Tue, 10 Dec 2013 15:03:38 +0000 (15:03 +0000)]
- added method to OccurrenceService to retrieve all parent FieldUnits from a given DerivedUnit
Andreas Müller [Fri, 6 Dec 2013 13:39:20 +0000 (13:39 +0000)]
let ICdmDataSource implement javax.sql.DataSource #3910
Andreas Kohlbecker [Fri, 6 Dec 2013 11:28:16 +0000 (11:28 +0000)]
implementing rule 2 and 3 for #3904 (EuroMed: Implement filtering rules for Distributions) - all existing test running successfully
Andreas Kohlbecker [Fri, 6 Dec 2013 11:27:57 +0000 (11:27 +0000)]
documenting purose of class GenericRemoteTester
Andreas Müller [Thu, 5 Dec 2013 14:50:38 +0000 (14:50 +0000)]
handle not existing common names correct in DwcA-in
Katja Luther [Thu, 5 Dec 2013 13:33:03 +0000 (13:33 +0000)]
#3877
Katja Luther [Thu, 5 Dec 2013 13:03:47 +0000 (13:03 +0000)]
minor
Andreas Müller [Wed, 4 Dec 2013 20:09:47 +0000 (20:09 +0000)]
new factory methods
Andreas Müller [Wed, 4 Dec 2013 18:48:38 +0000 (18:48 +0000)]
add putter for locality
Andreas Müller [Wed, 4 Dec 2013 18:41:13 +0000 (18:41 +0000)]
add "part" to sequence setter
Andreas Kohlbecker [Wed, 4 Dec 2013 17:32:26 +0000 (17:32 +0000)]
working on multilanguage representations in REST services for DescriptionElements and StateData
Andreas Kohlbecker [Wed, 4 Dec 2013 17:32:12 +0000 (17:32 +0000)]
adding option to specify port
Andreas Müller [Wed, 4 Dec 2013 17:21:43 +0000 (17:21 +0000)]
remove old TDWGArea class
Patric Plitzner [Wed, 4 Dec 2013 14:41:44 +0000 (14:41 +0000)]
- added removeDescriptions() to IDescribable
- added @Override
Andreas Müller [Tue, 3 Dec 2013 12:49:54 +0000 (12:49 +0000)]
add convenients method for multiple elements
Katja Luther [Tue, 3 Dec 2013 09:49:23 +0000 (09:49 +0000)]
remove CopyOnWriteArrayList
Andreas Müller [Mon, 2 Dec 2013 15:58:59 +0000 (15:58 +0000)]
move fields up
Andreas Müller [Mon, 2 Dec 2013 15:56:45 +0000 (15:56 +0000)]
add first cascading to AgentBase.contact
Andreas Müller [Mon, 2 Dec 2013 15:36:12 +0000 (15:36 +0000)]
javadoc and licence
Andreas Müller [Mon, 2 Dec 2013 14:48:31 +0000 (14:48 +0000)]
add link to ticket #3596
Andreas Müller [Mon, 2 Dec 2013 14:16:15 +0000 (14:16 +0000)]
clean up and remove redundant !removed: #3596
Andreas Müller [Mon, 2 Dec 2013 14:06:21 +0000 (14:06 +0000)]
remove empty lines
Katja Luther [Mon, 2 Dec 2013 11:54:07 +0000 (11:54 +0000)]
Andreas Müller [Mon, 2 Dec 2013 10:53:50 +0000 (10:53 +0000)]
Add IDescribable interface #3917
Andreas Müller [Mon, 2 Dec 2013 09:36:27 +0000 (09:36 +0000)]
minor
Cherian Mathew [Thu, 28 Nov 2013 17:02:39 +0000 (17:02 +0000)]
fix for init strategy : inverse relationship
Cherian Mathew [Thu, 28 Nov 2013 15:37:22 +0000 (15:37 +0000)]
fixed deproxy problem for NonViralName
Cherian Mathew [Thu, 28 Nov 2013 15:19:55 +0000 (15:19 +0000)]
corrected init strategy for inverse relationships
Andreas Kohlbecker [Thu, 28 Nov 2013 12:57:19 +0000 (12:57 +0000)]
fixing initstrategy for TaxonInteraction
Andreas Müller [Thu, 28 Nov 2013 12:17:01 +0000 (12:17 +0000)]
Override added
Katja Luther [Thu, 28 Nov 2013 11:38:48 +0000 (11:38 +0000)]
minor
Katja Luther [Thu, 28 Nov 2013 10:33:07 +0000 (10:33 +0000)]
add try-catch ReferencedObjectUndeletableException to all delete calls
Katja Luther [Thu, 28 Nov 2013 10:27:59 +0000 (10:27 +0000)]
#3596
Andreas Müller [Thu, 28 Nov 2013 09:38:23 +0000 (09:38 +0000)]
remove import
Andreas Müller [Wed, 27 Nov 2013 21:46:22 +0000 (21:46 +0000)]
update schema location
Andreas Müller [Wed, 27 Nov 2013 21:43:14 +0000 (21:43 +0000)]
update schema location
Andreas Müller [Wed, 27 Nov 2013 21:41:26 +0000 (21:41 +0000)]
update schema location
Andreas Müller [Wed, 27 Nov 2013 17:26:21 +0000 (17:26 +0000)]
jvadoc/override
Andreas Müller [Wed, 27 Nov 2013 17:19:46 +0000 (17:19 +0000)]
javadoc
Andreas Müller [Wed, 27 Nov 2013 16:54:01 +0000 (16:54 +0000)]
merge mine with trunk, hope nothing serious changed
Andreas Kohlbecker [Wed, 27 Nov 2013 15:56:38 +0000 (15:56 +0000)]
avoiding NPE in REST controller
Andreas Kohlbecker [Wed, 27 Nov 2013 15:56:34 +0000 (15:56 +0000)]
fixing initstrategy for polytomouskeynodes
Katja Luther [Wed, 27 Nov 2013 11:44:44 +0000 (11:44 +0000)]
Katja Luther [Wed, 27 Nov 2013 11:34:06 +0000 (11:34 +0000)]
delete terms
Cherian Mathew [Wed, 27 Nov 2013 10:55:26 +0000 (10:55 +0000)]
remote.xml : added simple rdf marshaller (named rdfMarshaller) for the web service rdf responses
RdfViewTest, OaiPmhViewTest : changed SpringBeanByType annotation to SpringBeanByName since we have now two marshallers (remote.xml)
RdfView, XmlView, OaiPmhResponseView : added qualifier for autowired marshaller since we now have two marshallers (remote.xml)
RdfView : added implementation for marshalling (recognised) rdf objects
RdfViewTest : added test for marshalling NameInformationRdf
mappings.xml : addedd dozer mappings for mapping fields from NameInformation to NameInformationRdf
TDWGNamespacePrefixMapper : added new namespaces, including our own
cdmlib-remote-servlet.xml : added new rdf view to configuration
NameCatalogueController : added call to deproxy NonViralName
TaxonConcept : made HasRelationship fields public since it can be potentially used in other classes
Cherian Mathew [Wed, 27 Nov 2013 10:42:45 +0000 (10:42 +0000)]
NameInformationTest : sample test file for name information test in RdfViewTest
rdf-views.xml: new view configuration for rdf view
NameInformationRdf : new rdf class corresponding to NameInformation
Andreas Kohlbecker [Tue, 26 Nov 2013 16:12:02 +0000 (16:12 +0000)]
finalizing test - see #3730 (Taxon.removeTaxonRelation() raises error on update)
Andreas Kohlbecker [Tue, 26 Nov 2013 14:18:45 +0000 (14:18 +0000)]
implementing option to update the database scheme via cdmlib-remote, but blocked by #3910 (eu.etaxonomy.cdm.database.ICdmDataSource is not compatible to javax.sql.DataSource)
Andreas Kohlbecker [Thu, 21 Nov 2013 19:18:10 +0000 (19:18 +0000)]
TreeNodeBeanProcessor to suppresses the redundant output of distribution.area in distribution trees
Andreas Kohlbecker [Thu, 21 Nov 2013 19:18:04 +0000 (19:18 +0000)]
TreeNodeBeanProcessor to suppresses the redundant output of distribution.area in distribution trees
Andreas Kohlbecker [Thu, 21 Nov 2013 19:17:59 +0000 (19:17 +0000)]
cleaning up
Andreas Kohlbecker [Thu, 21 Nov 2013 16:29:11 +0000 (16:29 +0000)]
simplifying and refactoring the distribution tree implementation, fixes problems in #3475 #2562 #3893
Katja Luther [Wed, 20 Nov 2013 11:50:26 +0000 (11:50 +0000)]
Katja Luther [Wed, 20 Nov 2013 10:23:13 +0000 (10:23 +0000)]
#3730
Katja Luther [Wed, 20 Nov 2013 09:41:38 +0000 (09:41 +0000)]
add deletion of polytomouskeynodes
Andreas Kohlbecker [Tue, 19 Nov 2013 15:14:03 +0000 (15:14 +0000)]
fixing #3891 (ordered distributions provided by portal/description//DistributionTree randomly broken) also related to #965 (Return type of partOf, kindOf etc. has to be decided)
Andreas Kohlbecker [Tue, 19 Nov 2013 14:41:34 +0000 (14:41 +0000)]
preventing NPE
l.morris [Tue, 19 Nov 2013 12:55:16 +0000 (12:55 +0000)]
Merge statistics branch into trunk
l.morris [Tue, 19 Nov 2013 10:55:52 +0000 (10:55 +0000)]
Merged from trunk to statistics branch
l.morris [Mon, 18 Nov 2013 13:38:12 +0000 (13:38 +0000)]
Merged from trunk to statistics branch
Patric Plitzner [Mon, 18 Nov 2013 09:16:03 +0000 (09:16 +0000)]
- added supportsCommonTaxonName checkbox to FeatureDetailElement (#3207)
Andreas Müller [Fri, 15 Nov 2013 16:52:00 +0000 (16:52 +0000)]
handle null classification for move taxon
Andreas Müller [Fri, 15 Nov 2013 16:46:18 +0000 (16:46 +0000)]
handle newClassificaiton explicitly
Andreas Müller [Fri, 15 Nov 2013 16:39:43 +0000 (16:39 +0000)]
try to fix StackOverflow for TaxonNode relations #3885
Andreas Müller [Fri, 15 Nov 2013 16:29:05 +0000 (16:29 +0000)]
message change
Andreas Kohlbecker [Fri, 15 Nov 2013 09:59:50 +0000 (09:59 +0000)]
fixing init strategies in DescriptionListPortalController, related to #3878 (References for common names do not appear anymore in the portal)
Andreas Kohlbecker [Fri, 15 Nov 2013 09:59:47 +0000 (09:59 +0000)]
avoiding tset failure when internet is not available
Andreas Kohlbecker [Fri, 15 Nov 2013 09:59:45 +0000 (09:59 +0000)]
fixing init strategy to again include childen after model change
Andreas Kohlbecker [Fri, 15 Nov 2013 09:59:41 +0000 (09:59 +0000)]
avoiding NPE in DescriptionUtility
l.morris [Wed, 13 Nov 2013 16:26:44 +0000 (16:26 +0000)]
Added a symbol for multiplication sign.
Patric Plitzner [Wed, 13 Nov 2013 11:10:24 +0000 (11:10 +0000)]
- reactivated BioCase test because the server is now responding
l.morris [Tue, 12 Nov 2013 18:28:36 +0000 (18:28 +0000)]
Handle references without authorTeam and handle html superscript tag.
Andreas Müller [Mon, 11 Nov 2013 22:36:32 +0000 (22:36 +0000)]
minor
Andreas Müller [Sun, 10 Nov 2013 22:44:17 +0000 (22:44 +0000)]
ignore biocase test as long as service is not available
Andreas Müller [Sun, 10 Nov 2013 22:41:52 +0000 (22:41 +0000)]
handle name cache in normal explicit import
Andreas Müller [Sat, 9 Nov 2013 12:05:35 +0000 (12:05 +0000)]
javadoc
Cherian Mathew [Fri, 8 Nov 2013 17:29:45 +0000 (17:29 +0000)]
added PresenceAbsenceTerm, KindOfUnit to the list of instantiable term types
Andreas Kohlbecker [Thu, 7 Nov 2013 20:43:22 +0000 (20:43 +0000)]
reducing log levels in AdvancedBeanInitialize debug -> trace, info->debug (except in exceptions)
l.morris [Thu, 7 Nov 2013 19:09:37 +0000 (19:09 +0000)]
Replace multiple character symbols e.g. mdash, male and female symbols in a single template.
Andreas Kohlbecker [Thu, 7 Nov 2013 16:28:56 +0000 (16:28 +0000)]
Revert "Revert """
This reverts commit
b4ee6fdb0c28cd3850a63a56741ddf2b74ada4ea.
reverting previous reverts
Andreas Kohlbecker [Thu, 7 Nov 2013 16:28:54 +0000 (16:28 +0000)]
Revert "Revert """
This reverts commit
3806de6e92a2958e4a80e2541966164067c4feda.
Andreas Kohlbecker [Thu, 7 Nov 2013 15:39:04 +0000 (15:39 +0000)]
Andreas Kohlbecker [Thu, 7 Nov 2013 15:39:02 +0000 (15:39 +0000)]
Andreas Kohlbecker [Thu, 7 Nov 2013 14:50:56 +0000 (14:50 +0000)]
initializing annotations also with ordered Distributions
Katja Luther [Thu, 7 Nov 2013 14:43:41 +0000 (14:43 +0000)]