cdmlib.git
9 years agofurther fixes for collectorTitle #4311
Andreas Müller [Fri, 20 Mar 2015 14:00:14 +0000 (14:00 +0000)]
further fixes for collectorTitle  #4311

9 years agofixing persistence tests on AgentBase.collectorTitle #4311
Andreas Müller [Fri, 20 Mar 2015 13:41:29 +0000 (13:41 +0000)]
fixing persistence tests on AgentBase.collectorTitle  #4311

9 years agoadd collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311
Andreas Müller [Fri, 20 Mar 2015 13:26:12 +0000 (13:26 +0000)]
add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase)  #4311

9 years agoupdate named area idInVocabularies if necessary #4140
Andreas Müller [Fri, 20 Mar 2015 12:55:50 +0000 (12:55 +0000)]
update named area idInVocabularies if necessary  #4140

9 years agomake identifier annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 12:32:36 +0000 (12:32 +0000)]
make identifier annotatable #4673

9 years agomake identifier annotatable #4673
Andreas Müller [Fri, 20 Mar 2015 12:12:40 +0000 (12:12 +0000)]
make identifier annotatable #4673

9 years agominor
Andreas Müller [Fri, 20 Mar 2015 10:34:58 +0000 (10:34 +0000)]
minor

9 years agoupdate script for orphaned taxon node removal #2341
Andreas Müller [Fri, 20 Mar 2015 10:32:59 +0000 (10:32 +0000)]
update script for orphaned taxon node removal #2341

9 years agoupdate cdmlib poms from 3.4.1-SNAPSHOT to 3.5.0-SNAPSHOT
Andreas Müller [Thu, 19 Mar 2015 23:46:37 +0000 (23:46 +0000)]
update cdmlib poms from 3.4.1-SNAPSHOT to 3.5.0-SNAPSHOT

9 years agoadapt CommonService to allow collection save and add remotewebapp test H2 udpate
Andreas Müller [Thu, 19 Mar 2015 15:30:43 +0000 (15:30 +0000)]
adapt CommonService to allow collection save  and add remotewebapp test H2 udpate

9 years agoupdated cdmTest in remote webapp to new model
Andreas Müller [Thu, 19 Mar 2015 14:33:45 +0000 (14:33 +0000)]
updated cdmTest in remote webapp to new model

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:56:37 +0000 (13:56 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:56:19 +0000 (13:56 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:53:07 +0000 (13:53 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:49:54 +0000 (13:49 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:45:29 +0000 (13:45 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:29:30 +0000 (13:29 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:28:13 +0000 (13:28 +0000)]
merge validation2 and model 3.5 into trunk

9 years agomerge validation2 and model 3.5 into trunk
Andreas Müller [Thu, 19 Mar 2015 13:24:42 +0000 (13:24 +0000)]
merge validation2 and model 3.5 into trunk

9 years ago - added option to cancel import
Patric Plitzner [Wed, 18 Mar 2015 08:35:15 +0000 (08:35 +0000)]
 - added option to cancel import

9 years ago - avoid duplicate taxon nodes in default classification
Patric Plitzner [Tue, 17 Mar 2015 17:07:23 +0000 (17:07 +0000)]
 - avoid duplicate taxon nodes in default classification

9 years ago - added test file
Patric Plitzner [Tue, 17 Mar 2015 17:06:22 +0000 (17:06 +0000)]
 - added test file

9 years agoremove import
Andreas Müller [Tue, 17 Mar 2015 14:55:23 +0000 (14:55 +0000)]
remove import

9 years ago - refactored code
Patric Plitzner [Tue, 17 Mar 2015 13:26:07 +0000 (13:26 +0000)]
 - refactored code

9 years ago - enhanced progress monitor
Patric Plitzner [Tue, 17 Mar 2015 13:19:46 +0000 (13:19 +0000)]
 - enhanced progress monitor

9 years ago - enhanced progress monitor
Patric Plitzner [Tue, 17 Mar 2015 13:07:10 +0000 (13:07 +0000)]
 - enhanced progress monitor
 - fixed multiple default classification creation

9 years ago - fixed potential NPE
Patric Plitzner [Tue, 17 Mar 2015 12:36:02 +0000 (12:36 +0000)]
 - fixed potential NPE

9 years ago - fixed taxon node matching for default classification
Patric Plitzner [Tue, 17 Mar 2015 11:46:38 +0000 (11:46 +0000)]
 - fixed taxon node matching for default classification

9 years agofix search for common names in editor and minor
Katja Luther [Tue, 17 Mar 2015 10:35:55 +0000 (10:35 +0000)]
fix search for common names in editor and minor

9 years ago - added new test cases (still temporarily @Ignore)
Patric Plitzner [Tue, 17 Mar 2015 10:04:50 +0000 (10:04 +0000)]
 - added new test cases (still temporarily @Ignore)

9 years ago - fixed potential NPE
Patric Plitzner [Tue, 17 Mar 2015 10:03:29 +0000 (10:03 +0000)]
 - fixed potential NPE

9 years ago - fixed potential NPE when adding taxon nodes for infra species
Patric Plitzner [Mon, 16 Mar 2015 20:10:48 +0000 (20:10 +0000)]
 - fixed potential NPE when adding taxon nodes for infra species

9 years ago - some code speed up
Patric Plitzner [Mon, 16 Mar 2015 15:49:24 +0000 (15:49 +0000)]
 - some code speed up
 - better default classification handling

9 years ago - fixed adding to default classification
Patric Plitzner [Mon, 16 Mar 2015 14:26:29 +0000 (14:26 +0000)]
 - fixed adding to default classification

9 years ago - temporarily added test to ignore
Patric Plitzner [Mon, 16 Mar 2015 14:03:53 +0000 (14:03 +0000)]
 - temporarily added test to ignore

9 years ago - implemented new config option "Move new taxa to default classification"
Patric Plitzner [Mon, 16 Mar 2015 13:50:38 +0000 (13:50 +0000)]
 - implemented new config option "Move new taxa to default classification"

9 years ago - added new config option "Move new taxa to default classification"
Patric Plitzner [Mon, 16 Mar 2015 13:18:45 +0000 (13:18 +0000)]
 - added new config option "Move new taxa to default classification"
 - do not add associations for identifications with preferredFlag=false

9 years ago - enhanced report
Patric Plitzner [Mon, 16 Mar 2015 09:10:53 +0000 (09:10 +0000)]
 - enhanced report

9 years ago - enhanced ggbn parsing
Patric Plitzner [Mon, 16 Mar 2015 08:58:56 +0000 (08:58 +0000)]
 - enhanced ggbn parsing
 - enhanced report

9 years ago - added test to ignore temporarily
Patric Plitzner [Thu, 12 Mar 2015 19:57:10 +0000 (19:57 +0000)]
 - added test to ignore temporarily

9 years ago - added test to ignore temporarily
Patric Plitzner [Thu, 12 Mar 2015 18:53:14 +0000 (18:53 +0000)]
 - added test to ignore temporarily

9 years ago - fixed rank parsing
Patric Plitzner [Thu, 12 Mar 2015 18:20:38 +0000 (18:20 +0000)]
 - fixed rank parsing
 - added deprecate annotation to config option

9 years agoswitching label and text in IdentifierType
Andreas Müller [Thu, 12 Mar 2015 16:03:58 +0000 (16:03 +0000)]
switching label and text in IdentifierType

9 years agolast updates to eFlora import
Andreas Müller [Thu, 12 Mar 2015 15:55:54 +0000 (15:55 +0000)]
last updates to eFlora import

9 years agoadd LSID and Alternative field number to Identifier Type vocabulary #4708, #4674
Andreas Müller [Thu, 12 Mar 2015 15:53:21 +0000 (15:53 +0000)]
add LSID and Alternative field number to Identifier Type vocabulary  #4708,  #4674

9 years ago - temp changes for name matching
Patric Plitzner [Thu, 12 Mar 2015 15:07:23 +0000 (15:07 +0000)]
 - temp changes for name matching

9 years agomoveTaxon() with uuids instead of objects as arguments
Katja Luther [Thu, 12 Mar 2015 11:20:27 +0000 (11:20 +0000)]
moveTaxon() with uuids instead of objects as arguments

9 years ago - some name matching enhancements
Patric Plitzner [Wed, 11 Mar 2015 15:17:10 +0000 (15:17 +0000)]
 - some name matching enhancements

9 years ago - reverted comment of test
Patric Plitzner [Wed, 11 Mar 2015 12:42:00 +0000 (12:42 +0000)]
 - reverted comment of test

9 years ago - added info messages to report
Patric Plitzner [Wed, 11 Mar 2015 09:50:03 +0000 (09:50 +0000)]
 - added info messages to report
 - enhanced taxon name matching

9 years agolatest updates to FotG import
Andreas Müller [Tue, 10 Mar 2015 16:49:32 +0000 (16:49 +0000)]
latest updates to FotG import

9 years agotype removed from SpecimenTypeParser
Andreas Müller [Tue, 10 Mar 2015 13:42:07 +0000 (13:42 +0000)]
type removed from SpecimenTypeParser

9 years agoupdate to Markup import
Andreas Müller [Tue, 10 Mar 2015 13:39:14 +0000 (13:39 +0000)]
update to Markup import

9 years agominor
Andreas Müller [Tue, 10 Mar 2015 10:31:12 +0000 (10:31 +0000)]
minor

9 years ago(no commit message)
Katja Luther [Tue, 10 Mar 2015 10:17:29 +0000 (10:17 +0000)]

9 years ago(no commit message)
Katja Luther [Tue, 10 Mar 2015 09:53:15 +0000 (09:53 +0000)]

9 years ago(no commit message)
Katja Luther [Tue, 10 Mar 2015 09:36:26 +0000 (09:36 +0000)]

9 years agofor infrageneric unranked rank adding [unranked] (Art.37.7 Melbourne Code)
Katja Luther [Tue, 10 Mar 2015 09:06:45 +0000 (09:06 +0000)]
for infrageneric unranked rank adding [unranked] (Art.37.7 Melbourne Code)
fixing bug with deletion of names and homotypicalGroups

9 years ago - fixed name matching when ignoring authorship
Patric Plitzner [Thu, 5 Mar 2015 13:05:01 +0000 (13:05 +0000)]
 - fixed name matching when ignoring authorship

9 years ago - fixed getTaxonForName()
Patric Plitzner [Wed, 4 Mar 2015 16:06:22 +0000 (16:06 +0000)]
 - fixed getTaxonForName()

9 years ago - added removeCountryFromLocalityText option to configurator (basically implementing...
Patric Plitzner [Wed, 4 Mar 2015 15:35:06 +0000 (15:35 +0000)]
 - added removeCountryFromLocalityText option to configurator (basically implementing the hack #4677)

9 years ago - shortened regex
Patric Plitzner [Wed, 4 Mar 2015 13:51:11 +0000 (13:51 +0000)]
 - shortened regex

9 years ago - fixed temporary geolocation hack
Patric Plitzner [Wed, 4 Mar 2015 13:34:32 +0000 (13:34 +0000)]
 - fixed temporary geolocation hack

9 years ago - fixed java doc
Patric Plitzner [Wed, 4 Mar 2015 13:00:16 +0000 (13:00 +0000)]
 - fixed java doc

9 years ago - fixed name matching when ignoring author
Patric Plitzner [Wed, 4 Mar 2015 11:30:18 +0000 (11:30 +0000)]
 - fixed name matching when ignoring author

9 years ago - re-added temporary hack
Patric Plitzner [Wed, 4 Mar 2015 10:36:51 +0000 (10:36 +0000)]
 - re-added temporary hack

9 years ago - removed temporary hack
Patric Plitzner [Wed, 4 Mar 2015 09:45:01 +0000 (09:45 +0000)]
 - removed temporary hack

9 years ago - fixed mapUnitIdToBarcode
Patric Plitzner [Wed, 4 Mar 2015 09:44:25 +0000 (09:44 +0000)]
 - fixed mapUnitIdToBarcode
 - fixed NPE for name parsing

9 years ago - added config option to choose mapping of ABCD UnitID
Patric Plitzner [Wed, 4 Mar 2015 07:46:33 +0000 (07:46 +0000)]
 - added config option to choose mapping of ABCD UnitID
 - added config option to ignore authorship when matching taxa
 - added first draft of ggbn extension parsing

9 years ago - added ignoreAuthorship flag to ABCD import
Patric Plitzner [Tue, 3 Mar 2015 14:18:19 +0000 (14:18 +0000)]
 - added ignoreAuthorship flag to ABCD import
  - when set to true taxon name matching will be done without the the authorship just on the nameCache of the NonViralName

9 years ago - reset all relevant dataholder fields for every unit
Patric Plitzner [Tue, 3 Mar 2015 13:31:13 +0000 (13:31 +0000)]
 - reset all relevant dataholder fields for every unit

9 years ago - added methods to handle identifiers
Patric Plitzner [Tue, 3 Mar 2015 13:28:45 +0000 (13:28 +0000)]
 - added methods to handle identifiers

9 years ago - fixed java doc
Patric Plitzner [Tue, 3 Mar 2015 11:46:54 +0000 (11:46 +0000)]
 - fixed java doc

9 years agolatest changes for Markup import
Andreas Müller [Mon, 2 Mar 2015 13:47:44 +0000 (13:47 +0000)]
latest changes for Markup import

9 years agolatest changes for Markup import
Andreas Müller [Mon, 2 Mar 2015 12:38:22 +0000 (12:38 +0000)]
latest changes for Markup import

9 years agoadd NewInstance for Names in Determination Event
Andreas Müller [Mon, 2 Mar 2015 12:37:15 +0000 (12:37 +0000)]
add NewInstance for Names in Determination Event

9 years agoadadpt TimePeriodParser to include lifespan
Andreas Müller [Fri, 27 Feb 2015 12:50:29 +0000 (12:50 +0000)]
adadpt TimePeriodParser to include lifespan

9 years agominor
Andreas Müller [Fri, 27 Feb 2015 10:40:26 +0000 (10:40 +0000)]
minor

9 years agoadd some doubtful taxon relationships tom BM transformer
Andreas Müller [Wed, 25 Feb 2015 22:11:37 +0000 (22:11 +0000)]
add some doubtful taxon relationships tom BM transformer

9 years ago(no commit message)
Katja Luther [Mon, 23 Feb 2015 09:24:48 +0000 (09:24 +0000)]

9 years ago - fixed paging for compressed specimen table
Patric Plitzner [Tue, 17 Feb 2015 11:43:30 +0000 (11:43 +0000)]
 - fixed paging for compressed specimen table

9 years ago - added pager to associated field units service method
Patric Plitzner [Tue, 17 Feb 2015 10:20:21 +0000 (10:20 +0000)]
 - added pager to associated field units service method

9 years agominor
Andreas Müller [Thu, 12 Feb 2015 11:41:41 +0000 (11:41 +0000)]
minor

9 years agolatest changes to Markup import
Andreas Müller [Thu, 12 Feb 2015 10:10:39 +0000 (10:10 +0000)]
latest changes to Markup import

9 years agominor
Andreas Müller [Thu, 12 Feb 2015 10:07:07 +0000 (10:07 +0000)]
minor

9 years agomoved flockSearch from checklistDemoController to TaxonController and renamed it...
Alexander Oppermann [Thu, 12 Feb 2015 09:28:34 +0000 (09:28 +0000)]
moved flockSearch from checklistDemoController to TaxonController and renamed it to inlucdedTaxa

9 years agoadd UpdateResult and make DeleteResult a subclass
Katja Luther [Wed, 11 Feb 2015 13:23:45 +0000 (13:23 +0000)]
add UpdateResult and make DeleteResult a subclass

9 years ago(no commit message)
Katja Luther [Wed, 11 Feb 2015 13:23:08 +0000 (13:23 +0000)]

9 years agominor
Andreas Müller [Wed, 11 Feb 2015 12:40:15 +0000 (12:40 +0000)]
minor

9 years agoadding missing statisticalValues to init strategy, related to #4639 (Show quantitativ...
Andreas Kohlbecker [Mon, 9 Feb 2015 16:05:11 +0000 (16:05 +0000)]
adding missing statisticalValues to init strategy, related to #4639 (Show quantitative data correctly in Data portal (for Cyprus portal))

9 years agotypo
Andreas Kohlbecker [Mon, 9 Feb 2015 16:05:08 +0000 (16:05 +0000)]
typo

9 years agoadd amplification cache test
Andreas Müller [Fri, 6 Feb 2015 22:29:00 +0000 (22:29 +0000)]
add amplification cache test

9 years agochange subtree param name
Andreas Müller [Fri, 6 Feb 2015 17:49:14 +0000 (17:49 +0000)]
change subtree param name

9 years agoAdd correct paging to findByIdentifier
Andreas Müller [Fri, 6 Feb 2015 17:38:42 +0000 (17:38 +0000)]
Add correct paging to findByIdentifier

9 years agoallow streaming for PagerParams
Andreas Müller [Fri, 6 Feb 2015 17:31:20 +0000 (17:31 +0000)]
allow streaming for PagerParams

9 years agofixing ambigious mvc controller mapping
Andreas Kohlbecker [Fri, 6 Feb 2015 14:02:16 +0000 (14:02 +0000)]
fixing ambigious mvc controller mapping

9 years agofixing bug regarding taxon lsid in catalogue service
Andreas Kohlbecker [Tue, 3 Feb 2015 16:09:29 +0000 (16:09 +0000)]
fixing bug regarding taxon lsid in catalogue service

9 years agoadding lsid to TaxonInformation
Andreas Kohlbecker [Tue, 3 Feb 2015 15:15:09 +0000 (15:15 +0000)]
adding lsid to TaxonInformation

9 years agoworking on documentation and fixing include pattern for catalogue services
Andreas Kohlbecker [Tue, 3 Feb 2015 15:15:06 +0000 (15:15 +0000)]
working on documentation and fixing include pattern for catalogue services

9 years agoextended controller to enable feature export
Alexander Oppermann [Mon, 2 Feb 2015 15:24:24 +0000 (15:24 +0000)]
extended controller to enable feature export