Andreas Müller [Mon, 17 Sep 2018 02:37:46 +0000 (04:37 +0200)]
cleanup
Andreas Müller [Mon, 17 Sep 2018 02:26:29 +0000 (04:26 +0200)]
ref #7764 fix failing synonym search with classification or subtree filter
Andreas Müller [Sun, 16 Sep 2018 14:50:50 +0000 (16:50 +0200)]
allow nom status parsing without name (with ICNAFP as default)
Andreas Müller [Sun, 16 Sep 2018 14:49:45 +0000 (16:49 +0200)]
ref #7761 add isInvalidDesignation to TaxonRelationshipType
Andreas Müller [Sun, 16 Sep 2018 14:27:31 +0000 (16:27 +0200)]
ref #7761 add isInvalidDesignation to TaxonRelationshipType
Andreas Müller [Sat, 15 Sep 2018 07:41:56 +0000 (09:41 +0200)]
make authenticationManager lazy to avoid circals during start up
Andreas Kohlbecker [Fri, 14 Sep 2018 19:29:55 +0000 (21:29 +0200)]
fix #5868 restoring freetext search with leading wildcard and with empty query string, also fixes bug introduced while solving #4223
Patrick Plitzner [Fri, 14 Sep 2018 11:59:28 +0000 (13:59 +0200)]
ref #7760 Show name authors for type designations
Andreas Müller [Fri, 14 Sep 2018 11:42:07 +0000 (13:42 +0200)]
ref #7745 fix failing pathFrom if subtree is null
Katja Luther [Fri, 14 Sep 2018 11:37:41 +0000 (13:37 +0200)]
ref #7761: add isInvalidDeisgnation() method to taxon
Andreas Kohlbecker [Fri, 14 Sep 2018 10:28:40 +0000 (12:28 +0200)]
ref #7745 upgrading springfox-swagger2 to circumvent bug related to @RequestMappings
Andreas Müller [Fri, 14 Sep 2018 09:25:07 +0000 (11:25 +0200)]
cleanup
Andreas Müller [Fri, 14 Sep 2018 09:24:53 +0000 (11:24 +0200)]
ref #7745 switch of required in getTaxonNodes
Andreas Müller [Fri, 14 Sep 2018 09:24:04 +0000 (11:24 +0200)]
ref #7745 childNodesOf implemented
Andreas Müller [Fri, 14 Sep 2018 08:57:44 +0000 (10:57 +0200)]
ref #7745 some exception handling for subtree filter
Andreas Kohlbecker [Fri, 14 Sep 2018 08:57:33 +0000 (10:57 +0200)]
de-dublicating doGetTaxonNodes() controller methods
Andreas Müller [Fri, 14 Sep 2018 08:07:19 +0000 (10:07 +0200)]
ref #7745 fixing workaround for override methods
Andreas Müller [Fri, 14 Sep 2018 07:43:11 +0000 (09:43 +0200)]
ref #7745 workaround for duplicate TaxonPortalController getTaxonNodes Method
Andreas Müller [Fri, 14 Sep 2018 07:36:15 +0000 (09:36 +0200)]
ref #7745 workaround for duplicate TaxonController get Method (for testing if this is the reason) for failing
Andreas Müller [Fri, 14 Sep 2018 07:24:36 +0000 (09:24 +0200)]
ref #7745 workaround for duplicate TaxonController get Method (for testing if this is the reason) for failing
Andreas Müller [Thu, 13 Sep 2018 21:08:05 +0000 (23:08 +0200)]
ref #7745 add subtree filter to missing methods (childNodesOf is still missing implementation)
Andreas Müller [Thu, 13 Sep 2018 21:05:56 +0000 (23:05 +0200)]
cleanup
Andreas Kohlbecker [Thu, 13 Sep 2018 15:45:56 +0000 (17:45 +0200)]
ref #7745 harmonizing subtree query parameters
Andreas Kohlbecker [Thu, 13 Sep 2018 15:44:24 +0000 (17:44 +0200)]
ref #7759 additional TaxonNode webservice endpoint and solving logging problems
Andreas Müller [Thu, 13 Sep 2018 10:01:20 +0000 (12:01 +0200)]
fix #7757 first freetext search test working for subtree filter
Andreas Müller [Thu, 13 Sep 2018 09:38:40 +0000 (11:38 +0200)]
cleanup
Andreas Müller [Thu, 13 Sep 2018 09:37:48 +0000 (11:37 +0200)]
fix #7757 removed all deprecated hibernate @Index (and @Table) annotations from model
Andreas Müller [Thu, 13 Sep 2018 08:27:55 +0000 (10:27 +0200)]
ref #7745 implement treeindex search in freetext search (untested)
Andreas Müller [Thu, 13 Sep 2018 08:25:26 +0000 (10:25 +0200)]
cleanup
Andreas Müller [Thu, 13 Sep 2018 08:18:32 +0000 (10:18 +0200)]
rename AbstractRelationshipEdge.relationshipType to be more generic
Andreas Müller [Wed, 12 Sep 2018 22:00:49 +0000 (00:00 +0200)]
ref #7745 add subtree parameter to freetext search methods
Andreas Müller [Wed, 12 Sep 2018 21:01:40 +0000 (23:01 +0200)]
ref #7745 fix bug in queries with subtree, some first test and cleanup
Andreas Müller [Wed, 12 Sep 2018 17:28:35 +0000 (19:28 +0200)]
ref #7745 fix syntax for node.treeindex in query
Andreas Müller [Wed, 12 Sep 2018 16:52:37 +0000 (18:52 +0200)]
ref #7745 subtree filter to taxon search (add missing parameter for queries)
Andreas Kohlbecker [Wed, 12 Sep 2018 15:07:28 +0000 (17:07 +0200)]
ref #7666 doGetTaxonRelationshipsDTO groupMisapplications paramter default = false
Andreas Müller [Wed, 12 Sep 2018 13:52:51 +0000 (15:52 +0200)]
ref #7745 add subtree filter to taxon search (not yet tested for subtree != null)
Andreas Kohlbecker [Wed, 12 Sep 2018 13:46:25 +0000 (15:46 +0200)]
fix #7756 allowig direction to be null again
Andreas Müller [Wed, 12 Sep 2018 08:59:14 +0000 (10:59 +0200)]
ref #7745 add subtree filter also to ClassificationPortalListController
Andreas Müller [Wed, 12 Sep 2018 08:33:29 +0000 (10:33 +0200)]
ref #7745 fix recursive call in deprecated method
Andreas Müller [Wed, 12 Sep 2018 07:31:42 +0000 (09:31 +0200)]
ref #7745 implement subtree filter for ClassificationController.rankSpecificRootNotes and .childNodes
Andreas Müller [Tue, 11 Sep 2018 12:54:41 +0000 (14:54 +0200)]
ref #7666 replace StringUtils dependency by correct one
Andreas Müller [Tue, 11 Sep 2018 12:09:33 +0000 (14:09 +0200)]
ref #7666 allow formatting without name part (2. test)
Andreas Müller [Tue, 11 Sep 2018 12:09:12 +0000 (14:09 +0200)]
cleanup
Andreas Müller [Tue, 11 Sep 2018 12:00:25 +0000 (14:00 +0200)]
ref #7666 allow formatting without name part
Katja Luther [Tue, 11 Sep 2018 06:56:28 +0000 (08:56 +0200)]
avoid NPE when creating CollectionDto
Andreas Müller [Mon, 10 Sep 2018 14:23:03 +0000 (16:23 +0200)]
ref #7666 fix team formatting (incorrect index of ambersand)
Katja Luther [Mon, 10 Sep 2018 11:39:01 +0000 (13:39 +0200)]
ref #6559: get and ordered list of MAN, proparte synonyms and invalid designations
Andreas Müller [Sun, 9 Sep 2018 20:03:57 +0000 (22:03 +0200)]
ref #7420 add config parameter to getWorksheetname for Excel import
Andreas Kohlbecker [Fri, 7 Sep 2018 11:29:28 +0000 (13:29 +0200)]
fixing ehcache.xml
Andreas Kohlbecker [Fri, 7 Sep 2018 11:26:01 +0000 (13:26 +0200)]
ref #7742 disposable CdmCachers
Andreas Kohlbecker [Fri, 7 Sep 2018 11:24:39 +0000 (13:24 +0200)]
typo
Andreas Kohlbecker [Fri, 7 Sep 2018 11:24:07 +0000 (13:24 +0200)]
removing commented config line
Andreas Kohlbecker [Fri, 7 Sep 2018 11:17:35 +0000 (13:17 +0200)]
Revert "ref #7729 removing unused ehcache.xml - all config is code based"
This reverts commit
cf4ebe93a29635ab57e6ec066c32cdb344bbd297.
Andreas Kohlbecker [Fri, 7 Sep 2018 09:12:54 +0000 (11:12 +0200)]
ref #7729 removing unused ehcache.xml - all config is code based
Andreas Kohlbecker [Fri, 7 Sep 2018 09:08:56 +0000 (11:08 +0200)]
ref #7729 setting maxEntriesLocalHeap for the cdmDefaultCache and activating ehcache jmx management beans for the CdmTransientEntityCacher
Andreas Kohlbecker [Wed, 5 Sep 2018 08:13:03 +0000 (10:13 +0200)]
adjusting loglevel of bean initializers
Katja Luther [Thu, 6 Sep 2018 18:43:00 +0000 (20:43 +0200)]
code cleaning
Katja Luther [Thu, 6 Sep 2018 17:23:18 +0000 (19:23 +0200)]
add TypeDesignationComparator
Katja Luther [Thu, 6 Sep 2018 16:53:08 +0000 (18:53 +0200)]
fix TypeDesignationSetManagerTest by sorting typeDesignations
Andreas Müller [Thu, 6 Sep 2018 13:49:45 +0000 (15:49 +0200)]
ref #7644 fix getYear() in test
Katja Luther [Thu, 6 Sep 2018 13:36:14 +0000 (15:36 +0200)]
adapt OccurrenceController to changes in OccurrenceService
Andreas Müller [Thu, 6 Sep 2018 13:24:34 +0000 (15:24 +0200)]
cleanup
Katja Luther [Thu, 6 Sep 2018 13:21:18 +0000 (15:21 +0200)]
minor
Katja Luther [Thu, 6 Sep 2018 13:13:41 +0000 (15:13 +0200)]
fix TypeDesignationSetManager, use values of map of typeDesignations instead of map in mapAndSort
Andreas Müller [Thu, 6 Sep 2018 13:00:27 +0000 (15:00 +0200)]
ref #7644 handle continued in getYear()
Katja Luther [Thu, 6 Sep 2018 12:41:57 +0000 (14:41 +0200)]
ref #7599: further improvement for specimenDtos
Katja Luther [Thu, 6 Sep 2018 11:36:27 +0000 (13:36 +0200)]
fix bugs in abcd import
Katja Luther [Thu, 6 Sep 2018 09:47:27 +0000 (11:47 +0200)]
fix TypeDesignationSetManager
Katja Luther [Thu, 6 Sep 2018 09:09:29 +0000 (11:09 +0200)]
getTypeDesignations in TypeDesignationSetManager should return a collection
Katja Luther [Thu, 6 Sep 2018 08:49:02 +0000 (10:49 +0200)]
move createShortCitation to ReferenceCacheStrategy
Katja Luther [Wed, 5 Sep 2018 13:03:18 +0000 (15:03 +0200)]
ref #7700: fide and parenthesis are separated separators in taggedText
Katja Luther [Wed, 5 Sep 2018 13:01:46 +0000 (15:01 +0200)]
ref #7700: use TypedesignationSetManager for creating TypeDesignationString for homotypic group in cdm light export
Katja Luther [Wed, 5 Sep 2018 12:53:26 +0000 (14:53 +0200)]
ref #7700: use TypedesignationSetManager for creating TypeDesignationString for homotypic group in cdm light export
Andreas Kohlbecker [Wed, 5 Sep 2018 07:58:39 +0000 (09:58 +0200)]
avoiding too extensive logging by commenting all hardcoded loglevels
Andreas Kohlbecker [Tue, 4 Sep 2018 13:13:56 +0000 (15:13 +0200)]
ref #7600 implementing setAnnotations()
Andreas Müller [Tue, 4 Sep 2018 11:49:34 +0000 (13:49 +0200)]
fix #7644 fix failing test in parser and add "continued" parsing to all relevant patterns
Andreas Kohlbecker [Tue, 4 Sep 2018 08:57:30 +0000 (10:57 +0200)]
ref #7666 NARROW NO-BREAK in UTF8 class
Andreas Müller [Tue, 4 Sep 2018 08:22:56 +0000 (10:22 +0200)]
ref #7644 some further fine tuning on setting CONTINUED/end date in TimePeriod and some cleanup
Andreas Müller [Tue, 4 Sep 2018 07:53:30 +0000 (09:53 +0200)]
ref #7644 implement "continued" in TimePeriod, still missing for most of the formats in parser
Andreas Kohlbecker [Tue, 4 Sep 2018 07:34:28 +0000 (09:34 +0200)]
ref #7666 adding NARROW NO-BREAK after doubtful marker - adapting test
Andreas Kohlbecker [Tue, 4 Sep 2018 07:13:24 +0000 (09:13 +0200)]
ref #7666 adding NARROW NO-BREAK after doubtful marker
Andreas Müller [Mon, 3 Sep 2018 20:41:07 +0000 (22:41 +0200)]
next try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller [Mon, 3 Sep 2018 20:38:05 +0000 (22:38 +0200)]
next try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller [Mon, 3 Sep 2018 19:51:46 +0000 (21:51 +0200)]
try to fix usage of wrong signature in TaxEditor CacheLoader test
Andreas Müller [Mon, 3 Sep 2018 19:51:16 +0000 (21:51 +0200)]
test trim in Excel import column recognition
Andreas Müller [Mon, 3 Sep 2018 19:09:52 +0000 (21:09 +0200)]
cleanup
Andreas Müller [Thu, 30 Aug 2018 22:45:48 +0000 (00:45 +0200)]
cleanup
Katja Luther [Mon, 3 Sep 2018 08:47:53 +0000 (10:47 +0200)]
ref #7553: move TypeDesignationSetmanagerTest to cdmlib
Andreas Kohlbecker [Fri, 31 Aug 2018 11:03:31 +0000 (13:03 +0200)]
code cleanig
Andreas Kohlbecker [Fri, 31 Aug 2018 11:02:44 +0000 (13:02 +0200)]
code cleanig
Andreas Müller [Thu, 30 Aug 2018 21:52:06 +0000 (23:52 +0200)]
javadoc, cleanup and rename permanentCacher
Andreas Müller [Thu, 30 Aug 2018 21:49:44 +0000 (23:49 +0200)]
javadoc, cleanup and rename permanentCacher
Andreas Müller [Thu, 30 Aug 2018 21:22:44 +0000 (23:22 +0200)]
ref #7709 remove NPE
Andreas Müller [Thu, 30 Aug 2018 21:03:23 +0000 (23:03 +0200)]
ref #7709 cleanup CdmTransientEntityCacher
Andreas Müller [Thu, 30 Aug 2018 20:45:08 +0000 (22:45 +0200)]
ref #7709 revert using uuid in CdmEntityCacheKey as key part
Andreas Müller [Thu, 30 Aug 2018 20:39:59 +0000 (22:39 +0200)]
cleanup
Andreas Müller [Thu, 30 Aug 2018 20:39:35 +0000 (22:39 +0200)]
ref #7709 revert using uuid in CdmEntityCacheKey as
Andreas Müller [Thu, 30 Aug 2018 12:18:26 +0000 (14:18 +0200)]
ref #7709 javadoc
Andreas Müller [Thu, 30 Aug 2018 11:47:07 +0000 (13:47 +0200)]
fix #7709 use uuid instead of id for CdmEntityCacheKey
Andreas Müller [Thu, 30 Aug 2018 11:36:50 +0000 (13:36 +0200)]
minor