Patric Plitzner [Fri, 23 Jan 2015 14:50:02 +0000 (14:50 +0000)]
fixed
Andreas Müller [Fri, 23 Jan 2015 14:33:37 +0000 (14:33 +0000)]
added excludes for swagger
Patric Plitzner [Fri, 23 Jan 2015 13:59:34 +0000 (13:59 +0000)]
- added ABCD import test for subspecies
Andreas Müller [Fri, 23 Jan 2015 12:30:59 +0000 (12:30 +0000)]
add findByIdentifer to TaxonListController for classification filter
Andreas Müller [Fri, 23 Jan 2015 12:20:27 +0000 (12:20 +0000)]
null handling for find(UUID) and load(UUID) methods
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:39 +0000 (11:40 +0000)]
first fully working swagger doc on the cdm remote api. Model scan ist still disabled to allow faster application startup. Remote api organized in multiple swagger groups. Adding support for swagger goups to the swagger-ui. Cuostomization of the swagger-ui: branding and adding a menu to link to the swagger groups.
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:27 +0000 (11:40 +0000)]
removing duplicate link in index.html
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:25 +0000 (11:40 +0000)]
experimenting with multiple swager groups and fixing the bean loading order
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:23 +0000 (11:40 +0000)]
index.html links to swagger-ui
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:21 +0000 (11:40 +0000)]
removing obsolete dependencies and exclusions from pom.xml
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:19 +0000 (11:40 +0000)]
activating the swagger rest service documentation by reverting the revertion of the premature committed experimental branch (swagger) svn: r21387, git:
be528c1edf
Andreas Kohlbecker [Fri, 23 Jan 2015 11:40:04 +0000 (11:40 +0000)]
updating documnetation
Patric Plitzner [Fri, 23 Jan 2015 10:35:05 +0000 (10:35 +0000)]
- fixed potential NPE
Patric Plitzner [Fri, 23 Jan 2015 09:50:56 +0000 (09:50 +0000)]
- added option to specify a URI for the import report to write it to a file
Patric Plitzner [Fri, 23 Jan 2015 08:07:08 +0000 (08:07 +0000)]
- add taxon name instead of taxon for determination
- refactored taxon search
- 1. search for taxon name (create if not found)
- 2. search with taxon name for taxon (create if not found)
- added basic reporting functionality to import
Patric Plitzner [Fri, 23 Jan 2015 07:55:05 +0000 (07:55 +0000)]
- fixed typo
Andreas Müller [Fri, 23 Jan 2015 00:29:51 +0000 (00:29 +0000)]
fix NPE in findByIdentifier controller method
Andreas Müller [Thu, 22 Jan 2015 15:47:08 +0000 (15:47 +0000)]
missing persistence changes for findByIdentifier
Patric Plitzner [Thu, 22 Jan 2015 15:11:23 +0000 (15:11 +0000)]
- added two methods to find/create names and taxa
- fixed double creation of sub species
Patric Plitzner [Thu, 22 Jan 2015 15:05:54 +0000 (15:05 +0000)]
- added "else if" to avoid unnecessary checking
Andreas Müller [Thu, 22 Jan 2015 13:27:38 +0000 (13:27 +0000)]
fix findByIdentifier failing test
Andreas Müller [Thu, 22 Jan 2015 10:40:49 +0000 (10:40 +0000)]
latest changes for findByIdentifier service
Andreas Müller [Thu, 22 Jan 2015 10:27:44 +0000 (10:27 +0000)]
change methodName fix for findByIdentier service
Patric Plitzner [Thu, 22 Jan 2015 09:16:34 +0000 (09:16 +0000)]
- increased code readability
Andreas Müller [Wed, 21 Jan 2015 16:31:46 +0000 (16:31 +0000)]
improve and rename findByIdentifier service
Andreas Müller [Wed, 21 Jan 2015 15:50:52 +0000 (15:50 +0000)]
fix MatchMode.prepend bug
Patric Plitzner [Wed, 21 Jan 2015 13:12:21 +0000 (13:12 +0000)]
- added parameter for each deduplication (references, classifications)
Patric Plitzner [Wed, 21 Jan 2015 13:08:14 +0000 (13:08 +0000)]
- added ABCD import paramater "skipDeduplication"
Patric Plitzner [Wed, 21 Jan 2015 09:25:57 +0000 (09:25 +0000)]
- avoid duplicating the default "ABCD classic" reference for every single imported unit
Cherian Mathew [Mon, 19 Jan 2015 15:33:52 +0000 (15:33 +0000)]
removed vaadin webapp dirs
Cherian Mathew [Mon, 19 Jan 2015 15:29:19 +0000 (15:29 +0000)]
removed vaadin references
Cherian Mathew [Mon, 19 Jan 2015 15:23:16 +0000 (15:23 +0000)]
removed references to vaadin and updated servlet scope to provided
Cherian Mathew [Mon, 19 Jan 2015 15:19:34 +0000 (15:19 +0000)]
pom.xml : added maven dependency goal to unpack the corresponding cdm-vaadin war into a directory in the target dir and added this directory as a resource when building the cdmlib-remote-webapp war
pom.xml, applicationContext.xml, cdmlib-remote-servlet.xml, web.xml, SpringMVCConfig.java : removed references to Vaadin
jetty.xml : changed configuration to be compatible with jetty 9
cdmlib-remote-servlet : added profile to switch on / off remoting depending on vm argument
src/main/webapp/VAADIN : removed vaadin webapp dir
Cherian Mathew [Mon, 19 Jan 2015 14:49:47 +0000 (14:49 +0000)]
removed references to vaadin in pom file
removed vaadin classes as they have been migrated to cdm-vaadin project
Andreas Müller [Mon, 19 Jan 2015 13:24:05 +0000 (13:24 +0000)]
remove some javadocs
Patric Plitzner [Fri, 16 Jan 2015 15:14:42 +0000 (15:14 +0000)]
- added gathering date and elevation to ABCD import
Patric Plitzner [Fri, 16 Jan 2015 10:03:50 +0000 (10:03 +0000)]
- use classification uuid to load classification if it exists in the data source
Patric Plitzner [Fri, 16 Jan 2015 08:17:30 +0000 (08:17 +0000)]
- cleaned up code
Patric Plitzner [Thu, 15 Jan 2015 15:07:00 +0000 (15:07 +0000)]
- refactored getFieldUnits()
Patric Plitzner [Thu, 15 Jan 2015 13:21:21 +0000 (13:21 +0000)]
- added null check and host check to avoid exceptions (fixes #4587)
Andreas Müller [Mon, 12 Jan 2015 15:04:34 +0000 (15:04 +0000)]
add transactional to listByIdentifier service
Alexander Oppermann [Mon, 12 Jan 2015 14:17:28 +0000 (14:17 +0000)]
fixed required parameter setting
Alexander Oppermann [Mon, 12 Jan 2015 13:46:20 +0000 (13:46 +0000)]
Implemented REST Controller for listByIdentifier service method
Andreas Müller [Fri, 9 Jan 2015 14:23:06 +0000 (14:23 +0000)]
remove imports
Andreas Müller [Fri, 9 Jan 2015 13:48:11 +0000 (13:48 +0000)]
minor
Andreas Müller [Fri, 9 Jan 2015 12:54:19 +0000 (12:54 +0000)]
switch on IPNI tests
Andreas Müller [Thu, 8 Jan 2015 21:40:04 +0000 (21:40 +0000)]
switch off validation
Andreas Müller [Thu, 8 Jan 2015 16:03:29 +0000 (16:03 +0000)]
adding ISelfDescriptive from validation branch
Andreas Müller [Thu, 8 Jan 2015 15:43:18 +0000 (15:43 +0000)]
rename abstract class
Andreas Müller [Thu, 8 Jan 2015 15:40:37 +0000 (15:40 +0000)]
rename abstract class
Andreas Müller [Thu, 8 Jan 2015 15:36:39 +0000 (15:36 +0000)]
merge cdmlib-persistence from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:34:16 +0000 (15:34 +0000)]
merge cdmlib-service from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:30:39 +0000 (15:30 +0000)]
merge cdmlib-remote from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:30:11 +0000 (15:30 +0000)]
merge cdmlib-print from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:29:28 +0000 (15:29 +0000)]
merge cdmlib-io from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:28:33 +0000 (15:28 +0000)]
merge cdmlib-ext from validation branch to trunk
Andreas Müller [Thu, 8 Jan 2015 15:27:29 +0000 (15:27 +0000)]
merge cdmlib-commons from validatioin to branch
Andreas Müller [Thu, 8 Jan 2015 15:01:49 +0000 (15:01 +0000)]
remove imports
Andreas Müller [Thu, 8 Jan 2015 14:59:44 +0000 (14:59 +0000)]
correct logger info
Andreas Müller [Thu, 8 Jan 2015 14:30:08 +0000 (14:30 +0000)]
VocEnum
Andreas Müller [Thu, 8 Jan 2015 11:27:09 +0000 (11:27 +0000)]
minor
Andreas Müller [Thu, 8 Jan 2015 10:46:19 +0000 (10:46 +0000)]
first tests for listByIdentifier
Andreas Müller [Wed, 7 Jan 2015 23:21:44 +0000 (23:21 +0000)]
remove imports
Andreas Müller [Wed, 7 Jan 2015 18:45:26 +0000 (18:45 +0000)]
factory method for Identifier Type
Andreas Müller [Wed, 7 Jan 2015 18:44:54 +0000 (18:44 +0000)]
labels for some TermTypes
Andreas Müller [Wed, 7 Jan 2015 18:36:27 +0000 (18:36 +0000)]
first untested version for findByIdentifier #4594
Andreas Müller [Wed, 7 Jan 2015 17:57:49 +0000 (17:57 +0000)]
update javadoc and Override in IdentifiableServiceBase
Katja Luther [Tue, 6 Jan 2015 12:33:37 +0000 (12:33 +0000)]
Andreas Müller [Tue, 6 Jan 2015 12:21:10 +0000 (12:21 +0000)]
avoid NPE in ImageInfo loading #4587
Andreas Müller [Wed, 17 Dec 2014 15:20:19 +0000 (15:20 +0000)]
minor
Andreas Müller [Wed, 17 Dec 2014 12:46:53 +0000 (12:46 +0000)]
add getter and setter for reverse complement
Andreas Müller [Wed, 17 Dec 2014 12:13:04 +0000 (12:13 +0000)]
minor
Andreas Müller [Tue, 16 Dec 2014 20:29:34 +0000 (20:29 +0000)]
add xslx test in io
Andreas Müller [Tue, 16 Dec 2014 20:05:44 +0000 (20:05 +0000)]
minor
Patric Plitzner [Tue, 16 Dec 2014 14:16:58 +0000 (14:16 +0000)]
- added comment
Patric Plitzner [Tue, 16 Dec 2014 14:11:19 +0000 (14:11 +0000)]
- fixed deep delete recursion bug
- fixed tests
Patric Plitzner [Tue, 16 Dec 2014 09:32:37 +0000 (09:32 +0000)]
- extracted deepDelete tests to own java class
- reduced exception logged in DeleteResult
Andreas Kohlbecker [Mon, 15 Dec 2014 21:19:23 +0000 (21:19 +0000)]
disabling dependencyLocationsEnabled option of the maven-project-info-reports-plugin to speed up site building
Andreas Müller [Mon, 15 Dec 2014 17:25:26 +0000 (17:25 +0000)]
refactor validation classes
Andreas Müller [Mon, 15 Dec 2014 16:58:22 +0000 (16:58 +0000)]
minor
Andreas Kohlbecker [Mon, 15 Dec 2014 14:46:42 +0000 (14:46 +0000)]
site-delpoy chmod = false
Andreas Müller [Mon, 15 Dec 2014 12:52:10 +0000 (12:52 +0000)]
add original label info to specimen facade #4218, #4565
edit-jenkins [Mon, 15 Dec 2014 12:46:14 +0000 (12:46 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Mon, 15 Dec 2014 12:46:09 +0000 (12:46 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.4.0
Patric Plitzner [Mon, 15 Dec 2014 12:00:37 +0000 (12:00 +0000)]
- fully implemented deep delete (child derivates)
- added tests
Andreas Müller [Mon, 15 Dec 2014 11:46:09 +0000 (11:46 +0000)]
minor
Andreas Müller [Mon, 15 Dec 2014 11:29:32 +0000 (11:29 +0000)]
add username, groupname and GrantedAuthority deduplication #4102
Andreas Kohlbecker [Mon, 15 Dec 2014 10:26:07 +0000 (10:26 +0000)]
turning java code level back to 1.6 to investigate existing problems
Andreas Kohlbecker [Mon, 15 Dec 2014 10:22:05 +0000 (10:22 +0000)]
more logging output
Andreas Kohlbecker [Mon, 15 Dec 2014 10:21:57 +0000 (10:21 +0000)]
typo
Andreas Müller [Fri, 12 Dec 2014 16:47:09 +0000 (16:47 +0000)]
add poi-ooxml and upgrade to 3.10-FINAL
Andreas Müller [Fri, 12 Dec 2014 15:50:45 +0000 (15:50 +0000)]
minor
Andreas Müller [Fri, 12 Dec 2014 15:25:16 +0000 (15:25 +0000)]
javadoc for Amplification and AmplificationResult
Andreas Müller [Fri, 12 Dec 2014 14:59:26 +0000 (14:59 +0000)]
minor
Andreas Müller [Fri, 12 Dec 2014 13:17:42 +0000 (13:17 +0000)]
added unit test for derived unit facade with parent but no field unit #4532
Patric Plitzner [Fri, 12 Dec 2014 08:41:39 +0000 (08:41 +0000)]
- implemented isDeletable() and delete()
- fixed test XML files and tests
Andreas Müller [Thu, 11 Dec 2014 23:50:24 +0000 (23:50 +0000)]
fix Occurrence test
Patric Plitzner [Thu, 11 Dec 2014 20:35:55 +0000 (20:35 +0000)]
- added isDeleteMolecularData flag to configurator
Patric Plitzner [Thu, 11 Dec 2014 20:35:04 +0000 (20:35 +0000)]
- use labelCache instead of description for amplification labeling
Patric Plitzner [Thu, 11 Dec 2014 20:34:10 +0000 (20:34 +0000)]
- change visibility of createTestDataSet to public