cdmlib.git
8 years agoupdating poms for 4.3.0-SNAPSHOT development
jenkins [Wed, 6 Jul 2016 13:38:49 +0000 (15:38 +0200)]
updating poms for 4.3.0-SNAPSHOT development

8 years ago#5960 Use abbrevTitle for reference parsing
Andreas Müller [Wed, 6 Jul 2016 12:57:05 +0000 (14:57 +0200)]
#5960 Use abbrevTitle for reference parsing

8 years ago#5958 Fix NPE in findTaxaByName with missing clazz param (II)
Andreas Müller [Wed, 6 Jul 2016 12:51:10 +0000 (14:51 +0200)]
#5958 Fix NPE in findTaxaByName with missing clazz param (II)

8 years agominor
Katja Luther [Wed, 6 Jul 2016 12:40:06 +0000 (14:40 +0200)]
minor

8 years agofix failing editor test because of updateSortindex in mergeEntityListener
Katja Luther [Wed, 6 Jul 2016 11:18:05 +0000 (13:18 +0200)]
fix failing editor test because of updateSortindex in mergeEntityListener

8 years ago#5958 Fix NPE in findTaxaByName with missing clazz param
Andreas Müller [Wed, 6 Jul 2016 12:11:40 +0000 (14:11 +0200)]
#5958 Fix NPE in findTaxaByName with missing clazz param

8 years agoFix compile error in Print Publisher
Andreas Müller [Wed, 6 Jul 2016 12:02:32 +0000 (14:02 +0200)]
Fix compile error in Print Publisher

8 years agocleaning up and hamonizing contoller code
Andreas Kohlbecker [Wed, 6 Jul 2016 11:15:23 +0000 (13:15 +0200)]
cleaning up and hamonizing contoller code

8 years ago#5958 fix failing tests
Andreas Müller [Wed, 6 Jul 2016 10:43:34 +0000 (12:43 +0200)]
#5958 fix failing tests

8 years ago#5958 Implement name part search as web service
Andreas Müller [Wed, 6 Jul 2016 10:14:49 +0000 (12:14 +0200)]
#5958 Implement name part search as web service

8 years ago#5957 Fix empty treeindexes
Andreas Müller [Wed, 6 Jul 2016 06:32:10 +0000 (08:32 +0200)]
#5957 Fix empty treeindexes

8 years ago#5957 Fix for facultative rank range
Andreas Müller [Tue, 5 Jul 2016 23:35:36 +0000 (01:35 +0200)]
#5957 Fix for facultative rank range

8 years ago#5957 mplement groupByHigherTaxon webservice
Andreas Müller [Tue, 5 Jul 2016 22:55:53 +0000 (00:55 +0200)]
#5957  mplement groupByHigherTaxon webservice

8 years agoCleanup
Andreas Müller [Tue, 5 Jul 2016 22:39:23 +0000 (00:39 +0200)]
Cleanup

8 years agoset failing tests to ignore
Katja Luther [Tue, 5 Jul 2016 13:05:52 +0000 (15:05 +0200)]
set failing tests to ignore

8 years agomodernizing HttpClient usage in isServiceAvailable() method
Andreas Kohlbecker [Tue, 5 Jul 2016 13:03:09 +0000 (15:03 +0200)]
modernizing HttpClient usage in isServiceAvailable() method

8 years agofix failing Polytomouskey test
Katja Luther [Tue, 5 Jul 2016 11:58:55 +0000 (13:58 +0200)]
fix failing Polytomouskey test

8 years agominor
Andreas Müller [Mon, 4 Jul 2016 21:53:51 +0000 (23:53 +0200)]
minor

8 years agoCleanup
Andreas Müller [Mon, 4 Jul 2016 21:36:57 +0000 (23:36 +0200)]
Cleanup

8 years ago#5681: move removeNullValueFromCollections to PostMergeEntityListener
Katja Luther [Tue, 5 Jul 2016 09:59:46 +0000 (11:59 +0200)]
#5681: move removeNullValueFromCollections to PostMergeEntityListener

8 years agoisServiceAvailable test for MobotOpenUrlServiceWrapperTest
Andreas Kohlbecker [Tue, 5 Jul 2016 09:43:46 +0000 (11:43 +0200)]
isServiceAvailable test for MobotOpenUrlServiceWrapperTest

8 years agonew method removeNullValues in CdmPreDataChangeListener
Katja Luther [Tue, 5 Jul 2016 09:14:16 +0000 (11:14 +0200)]
new method removeNullValues in CdmPreDataChangeListener

8 years agoremove updateSortindex and move removeNullValues to the mergeListener
Katja Luther [Tue, 5 Jul 2016 08:02:00 +0000 (10:02 +0200)]
remove updateSortindex and move removeNullValues to the mergeListener

8 years agoTransmissionEngineDistribution: setting lower min heap requirements for tests
Andreas Kohlbecker [Tue, 5 Jul 2016 08:34:17 +0000 (10:34 +0200)]
TransmissionEngineDistribution: setting lower min heap requirements for tests

8 years agoTransmissionEngineDistribution avoiding weired exceptions in tests
Andreas Kohlbecker [Tue, 5 Jul 2016 08:06:27 +0000 (10:06 +0200)]
TransmissionEngineDistribution avoiding weired exceptions in tests

8 years agoTransmissionEngineDistribution: solving problems with excessive heap consumption
Andreas Kohlbecker [Tue, 5 Jul 2016 06:29:51 +0000 (08:29 +0200)]
TransmissionEngineDistribution: solving problems with excessive heap consumption

8 years agoDynamicBatch: a JVM resources aware batch manager
Andreas Kohlbecker [Tue, 5 Jul 2016 06:26:06 +0000 (08:26 +0200)]
DynamicBatch: a JVM resources aware batch manager

8 years ago#5191 fixing process monitor updating in TransmissionEngine
Andreas Kohlbecker [Fri, 1 Jul 2016 16:37:04 +0000 (18:37 +0200)]
#5191 fixing process monitor updating in TransmissionEngine
   this is most probably not fixing the ticket but helps providing more reliable monitoring

8 years agoAdapt test dataset loading to standard path
Andreas Müller [Fri, 1 Jul 2016 12:33:21 +0000 (14:33 +0200)]
Adapt test dataset loading to standard path

8 years agoFix dataset issue in persistence test and clean up
Andreas Müller [Fri, 1 Jul 2016 12:08:35 +0000 (14:08 +0200)]
Fix dataset issue in persistence test and clean up

8 years ago#5678: fix deletion of FeatureNodes and minor changes
Katja Luther [Fri, 1 Jul 2016 11:14:33 +0000 (13:14 +0200)]
#5678: fix deletion of FeatureNodes and minor changes

8 years agoadvanced MediaDeletionConfigurator
Katja Luther [Thu, 30 Jun 2016 07:27:56 +0000 (09:27 +0200)]
advanced MediaDeletionConfigurator

8 years agoClean up
Andreas Müller [Fri, 1 Jul 2016 10:51:09 +0000 (12:51 +0200)]
Clean up

8 years ago#5945 Deduplicate results from termloading by class
Andreas Müller [Fri, 1 Jul 2016 10:50:09 +0000 (12:50 +0200)]
#5945 Deduplicate results from termloading by class

8 years ago#5941 Fix representation with missing language in Classbridge
Andreas Müller [Thu, 30 Jun 2016 14:51:45 +0000 (16:51 +0200)]
#5941 Fix representation with missing language in Classbridge

8 years agorefactoring listByIds to loadByIds
Andreas Kohlbecker [Thu, 30 Jun 2016 10:00:31 +0000 (12:00 +0200)]
refactoring listByIds to loadByIds

8 years agofix getUuidAndTitleCache for pattern with ?
Katja Luther [Wed, 29 Jun 2016 12:15:24 +0000 (14:15 +0200)]
fix getUuidAndTitleCache for pattern with ?

8 years ago#4366 ignoring test for short time
Andreas Kohlbecker [Wed, 29 Jun 2016 14:52:48 +0000 (16:52 +0200)]
#4366 ignoring test for short time

8 years ago#5931 Fix taxon cache strategy does not reflect protected flag in sec
Andreas Müller [Wed, 29 Jun 2016 14:48:11 +0000 (16:48 +0200)]
#5931 Fix taxon cache strategy does not reflect protected flag in sec
reference

8 years ago#4366 Transmissionengine aggregation of source references
Andreas Kohlbecker [Wed, 29 Jun 2016 13:56:15 +0000 (15:56 +0200)]
#4366 Transmissionengine aggregation of source references

8 years ago#4366 aggregation of distribution sources implemented for by area aggregation
Andreas Kohlbecker [Mon, 27 Jun 2016 10:42:03 +0000 (12:42 +0200)]
#4366 aggregation of distribution sources implemented for by area aggregation

8 years ago#4366 test for aggregation of distribution sources (byArea)
Andreas Kohlbecker [Mon, 27 Jun 2016 09:48:54 +0000 (11:48 +0200)]
#4366 test for aggregation of distribution sources (byArea)

8 years agoTransmissionEngine: modification to status compare function for case a==b
Andreas Kohlbecker [Mon, 27 Jun 2016 08:50:48 +0000 (10:50 +0200)]
TransmissionEngine: modification to status compare function for case a==b

8 years ago#5177 fixing tests which where broken after rebasing the TransmissionEngine-speedup...
Andreas Kohlbecker [Wed, 22 Jun 2016 15:33:13 +0000 (17:33 +0200)]
#5177 fixing tests which where broken after rebasing the TransmissionEngine-speedup on develop
    - lower rank limit of for the aggregation was too high

8 years agofixing bugs related to the rank intervall in the TransmissionEngineDistribution
Andreas Kohlbecker [Thu, 10 Sep 2015 07:35:11 +0000 (09:35 +0200)]
fixing bugs related to the rank intervall in the TransmissionEngineDistribution

8 years agosolving multiple problems in TransmissionEngine
Andreas Kohlbecker [Tue, 8 Sep 2015 10:24:11 +0000 (12:24 +0200)]
solving multiple problems in TransmissionEngine
  - avoiding LIE by fetching the parentAreas for each batch
  - skipping taxa not in specified rank interval

8 years agoperformance improvement
Andreas Kohlbecker [Mon, 7 Sep 2015 14:51:50 +0000 (16:51 +0200)]
performance improvement
 - avoiding cast
 - avoiding sorting the list of taxa

8 years agoperformance logging
Andreas Kohlbecker [Mon, 7 Sep 2015 13:25:58 +0000 (15:25 +0200)]
performance logging

8 years agoadding classificationLookup method to serice
Andreas Kohlbecker [Mon, 7 Sep 2015 13:25:20 +0000 (15:25 +0200)]
adding classificationLookup method to serice

8 years agoattempt to reduce the overhead imposed by database access
Andreas Kohlbecker [Fri, 4 Sep 2015 06:07:31 +0000 (08:07 +0200)]
attempt to reduce the overhead imposed by database access

8 years agotypo
Andreas Kohlbecker [Wed, 22 Jun 2016 13:51:48 +0000 (15:51 +0200)]
typo

8 years ago#5838 Fix taxon cache strategy for taxa with missing name
Andreas Müller [Wed, 29 Jun 2016 13:08:59 +0000 (15:08 +0200)]
#5838 Fix taxon cache strategy for taxa with missing name

8 years agofix getUuidAndTitleCache for pattern with * or ?
Katja Luther [Wed, 29 Jun 2016 12:22:33 +0000 (14:22 +0200)]
fix getUuidAndTitleCache for pattern with * or ?

8 years agoAdd Feature.Notes to Markup-Transformer
Andreas Müller [Wed, 29 Jun 2016 11:14:21 +0000 (13:14 +0200)]
Add Feature.Notes to Markup-Transformer

8 years agofix UuidAndtitleCache methods for pattern with asterisk
Katja Luther [Tue, 28 Jun 2016 13:29:51 +0000 (15:29 +0200)]
fix UuidAndtitleCache methods for pattern with asterisk

8 years ago#5916 Add (taxonomic) 'Notes' as new Feature to Feature vocabulary
Andreas Müller [Fri, 24 Jun 2016 08:32:10 +0000 (10:32 +0200)]
#5916 Add (taxonomic) 'Notes' as new Feature to Feature vocabulary

8 years ago#5909 revert unwanted commit
Andreas Müller [Thu, 23 Jun 2016 14:40:49 +0000 (16:40 +0200)]
#5909 revert unwanted commit

8 years ago#5909 fix failing test
Andreas Müller [Thu, 23 Jun 2016 14:27:47 +0000 (16:27 +0200)]
#5909 fix failing test

8 years ago#5909 further improve referenced name parser
Andreas Müller [Thu, 23 Jun 2016 13:58:26 +0000 (15:58 +0200)]
#5909 further improve referenced name parser

8 years agominor
Katja Luther [Thu, 23 Jun 2016 11:42:40 +0000 (13:42 +0200)]
minor

8 years agominor
Katja Luther [Thu, 23 Jun 2016 11:40:37 +0000 (13:40 +0200)]
minor

8 years agoMerge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther [Thu, 23 Jun 2016 11:18:23 +0000 (13:18 +0200)]
Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop

8 years agomake the csv export more configurable
Katja Luther [Thu, 23 Jun 2016 11:17:58 +0000 (13:17 +0200)]
make the csv export more configurable

8 years ago#5909 Improve referenced name parser, fix encoding and place published for article
Andreas Müller [Wed, 22 Jun 2016 20:44:42 +0000 (22:44 +0200)]
#5909 Improve referenced name parser, fix encoding and place published for article

8 years agoAdd Factory method to Institution
Andreas Müller [Wed, 22 Jun 2016 19:30:26 +0000 (21:30 +0200)]
Add Factory method to Institution

8 years ago#5909 Improve referenced name parser
Andreas Müller [Wed, 22 Jun 2016 19:23:54 +0000 (21:23 +0200)]
#5909 Improve referenced name parser

8 years ago#5909 Improve referenced name parser
Andreas Müller [Wed, 22 Jun 2016 15:38:22 +0000 (17:38 +0200)]
#5909 Improve referenced name parser

8 years agoAdapt ined. for NonVrialNameParser #5896
Andreas Müller [Wed, 22 Jun 2016 08:02:07 +0000 (10:02 +0200)]
Adapt ined. for NonVrialNameParser  #5896

8 years agoAdd ined. to NonVrialNameParser #5896
Andreas Müller [Wed, 22 Jun 2016 07:57:58 +0000 (09:57 +0200)]
Add ined. to NonVrialNameParser  #5896

8 years ago#4149 workaround implemented for #2707 completely removed
Andreas Kohlbecker [Tue, 21 Jun 2016 12:56:56 +0000 (14:56 +0200)]
#4149 workaround implemented for #2707 completely removed

8 years agoCleanup OrderedTermBase
Andreas Müller [Tue, 21 Jun 2016 12:19:05 +0000 (14:19 +0200)]
Cleanup OrderedTermBase

8 years agoUnignore GBIF Test
Andreas Müller [Tue, 21 Jun 2016 12:17:52 +0000 (14:17 +0200)]
Unignore GBIF Test

8 years agoFix failing test for syn. sec. (#5902) and clean up a bit
Andreas Müller [Tue, 21 Jun 2016 12:15:35 +0000 (14:15 +0200)]
Fix failing test for syn. sec. (#5902) and clean up a bit

8 years agoUse syn. sec. instead of sec. for synonym sec references #5902
Andreas Müller [Tue, 21 Jun 2016 11:45:19 +0000 (13:45 +0200)]
Use syn. sec. instead of sec. for synonym sec references  #5902

8 years agoAdd "ined." as nomenclatural status #5896
Andreas Müller [Mon, 20 Jun 2016 11:16:09 +0000 (13:16 +0200)]
Add "ined." as nomenclatural status #5896

8 years agoAdd taxon relationship types "unclear" and "not yet worked on" #5895
Andreas Müller [Mon, 20 Jun 2016 09:56:01 +0000 (11:56 +0200)]
Add taxon relationship types "unclear" and "not yet worked on" #5895

8 years agofix getUUIDAndTitleCache for references
Katja Luther [Fri, 17 Jun 2016 11:01:44 +0000 (13:01 +0200)]
fix getUUIDAndTitleCache for references

8 years ago#5536 avoiding LIE
Andreas Kohlbecker [Thu, 16 Jun 2016 14:10:38 +0000 (16:10 +0200)]
#5536 avoiding LIE

8 years ago#5852 dao, service and controler for taxonNode sibling retrieval
Andreas Kohlbecker [Wed, 15 Jun 2016 22:25:47 +0000 (00:25 +0200)]
#5852 dao, service and controler for taxonNode sibling retrieval

8 years agoFix Gbif test
Andreas Müller [Wed, 15 Jun 2016 16:48:39 +0000 (18:48 +0200)]
Fix Gbif test

8 years agotmp ignore gbif test
Andreas Müller [Wed, 15 Jun 2016 16:28:20 +0000 (18:28 +0200)]
tmp ignore gbif test

8 years agoMove E+M condensed string test
Andreas Müller [Wed, 15 Jun 2016 15:30:06 +0000 (17:30 +0200)]
Move E+M condensed string test

8 years agoFix failing test for Euro+Med condensed string
Andreas Müller [Wed, 15 Jun 2016 15:29:01 +0000 (17:29 +0200)]
Fix failing test for Euro+Med condensed string

8 years agoFix NPE for distributions without area in composer
Andreas Müller [Wed, 15 Jun 2016 15:21:04 +0000 (17:21 +0200)]
Fix NPE for distributions without area in composer

8 years agoRevert "fix getTaxonUUIDAndTitleCacheForClassification"
Katja Luther [Tue, 14 Jun 2016 12:47:44 +0000 (14:47 +0200)]
Revert "fix getTaxonUUIDAndTitleCacheForClassification"

This reverts commit 65149714aee38dad433405eb78195ac1ef5c4da3.

8 years ago#5536
Katja Luther [Tue, 14 Jun 2016 12:37:04 +0000 (14:37 +0200)]
#5536

8 years agofix getTaxonUUIDAndTitleCacheForClassification
Katja Luther [Sun, 12 Jun 2016 05:25:22 +0000 (07:25 +0200)]
fix getTaxonUUIDAndTitleCacheForClassification

8 years agoFix sorting problem for subareas in CubaCondensedDistribution and refactor the whole...
Andreas Müller [Tue, 14 Jun 2016 12:36:07 +0000 (14:36 +0200)]
Fix sorting problem for subareas in CubaCondensedDistribution and refactor the whole class  #5682

8 years agofixing version of xml-apis dependency
Andreas Kohlbecker [Mon, 13 Jun 2016 20:20:57 +0000 (22:20 +0200)]
fixing version of xml-apis dependency

8 years agorefactoring taxonNode controllers - return dtos from the service layer, support for...
Andreas Kohlbecker [Mon, 13 Jun 2016 15:02:30 +0000 (17:02 +0200)]
refactoring taxonNode controllers - return dtos from the service layer, support for #5887

8 years agorefactoring taxonNode controllers - return dtos from the service layer, support for...
Andreas Kohlbecker [Mon, 13 Jun 2016 15:02:03 +0000 (17:02 +0200)]
refactoring taxonNode controllers - return dtos from the service layer, support for #5887

8 years ago#5536 centralized handling of NULL removal related to HHH-9751 - test
Andreas Kohlbecker [Mon, 13 Jun 2016 11:36:39 +0000 (13:36 +0200)]
#5536 centralized handling of NULL removal related to HHH-9751 - test

8 years ago#5536 centralized handling of NULL removal related to HHH-9751
Andreas Kohlbecker [Mon, 13 Jun 2016 11:30:00 +0000 (13:30 +0200)]
#5536 centralized handling of NULL removal related to HHH-9751

8 years agoTry to fix pattern issue in taxon uuidAndTitleCache search
Andreas Müller [Fri, 10 Jun 2016 17:42:29 +0000 (19:42 +0200)]
Try to fix pattern issue in taxon uuidAndTitleCache search

8 years agoSimplify taxonDao
Andreas Müller [Fri, 10 Jun 2016 16:57:14 +0000 (18:57 +0200)]
Simplify taxonDao

8 years agorefactoring NodeSortMode
Andreas Kohlbecker [Fri, 10 Jun 2016 15:23:26 +0000 (17:23 +0200)]
refactoring NodeSortMode

8 years agoFix bug in TaxonDaoHibernateImpl
Andreas Müller [Fri, 10 Jun 2016 13:15:03 +0000 (15:15 +0200)]
Fix bug in TaxonDaoHibernateImpl

8 years agominor
Katja Luther [Fri, 10 Jun 2016 12:17:53 +0000 (14:17 +0200)]
minor

8 years agominor
Katja Luther [Fri, 10 Jun 2016 12:11:57 +0000 (14:11 +0200)]
minor

8 years agoadd limit and pattern to the uuid and titlecache methods
Katja Luther [Fri, 10 Jun 2016 12:10:32 +0000 (14:10 +0200)]
add limit and pattern to the uuid and titlecache methods