Cherian Mathew [Wed, 25 Jun 2014 16:18:34 +0000 (16:18 +0000)]
MockCdmCacher : added mock cdm cacher for tests in cdmlib-model
IdentifiableEntityTest : using mock cdm cacher in tests
Cherian Mathew [Wed, 25 Jun 2014 15:46:28 +0000 (15:46 +0000)]
added cdm cache for bean initialisation
Cherian Mathew [Wed, 25 Jun 2014 14:48:43 +0000 (14:48 +0000)]
adding initial basic tests for cdm caching api
Andreas Kohlbecker [Wed, 25 Jun 2014 14:42:30 +0000 (14:42 +0000)]
fixing #4273 (java.lang.ClassCastException in TaxonDaoHibernateImpl.countTaxaByCommonName() breaks taxon search) and most probably also other CommonName search related tickets
Cherian Mathew [Wed, 25 Jun 2014 14:33:14 +0000 (14:33 +0000)]
clean up
Cherian Mathew [Wed, 25 Jun 2014 14:32:23 +0000 (14:32 +0000)]
First commit for the CDM Caching api
ICdmCacher, CdmCacher : CDM Cache class based on Ehcache
defaultApplicationContext.xml : added cache package to be component scanned
DefinedTermBase : new set/getCdmCacher method to make cacher available to term classes
Language : added methods which use the cache to load language terms
Rank : corrected default language call to use the new method
pom.xml : added ehcache dependency
Cherian Mathew [Wed, 25 Jun 2014 14:21:53 +0000 (14:21 +0000)]
merged query call into one method to free connection resources
Andreas Müller [Wed, 25 Jun 2014 09:53:11 +0000 (09:53 +0000)]
remove some non-Javadocs
Andreas Müller [Wed, 25 Jun 2014 09:52:36 +0000 (09:52 +0000)]
authentication for JAXB import
Andreas Müller [Wed, 25 Jun 2014 09:51:36 +0000 (09:51 +0000)]
remove some comments and non-Javadocs
Andreas Müller [Wed, 25 Jun 2014 09:49:06 +0000 (09:49 +0000)]
first development for the export filter
Andreas Kohlbecker [Mon, 23 Jun 2014 11:50:31 +0000 (11:50 +0000)]
solving probelms with the HttpStatusMessage class and potentially fixing a problem for palmweb with the image metadata display
Andreas Müller [Mon, 23 Jun 2014 11:15:01 +0000 (11:15 +0000)]
minor
Andreas Müller [Mon, 23 Jun 2014 11:14:22 +0000 (11:14 +0000)]
minor
Andreas Müller [Mon, 23 Jun 2014 10:02:59 +0000 (10:02 +0000)]
minor changes mostly javadoc oder remove commented code
Andreas Kohlbecker [Thu, 19 Jun 2014 06:48:53 +0000 (06:48 +0000)]
preliminar solution to avoid problems due to #4263 (GeoServiceArea and IGeoServiceAreaMapping should manage mapping information per layer)
Andreas Müller [Wed, 18 Jun 2014 15:53:23 +0000 (15:53 +0000)]
javadoc
Patric Plitzner [Wed, 18 Jun 2014 07:02:12 +0000 (07:02 +0000)]
- fixed drag&drop for media
Patric Plitzner [Mon, 16 Jun 2014 08:57:24 +0000 (08:57 +0000)]
- added functionality to filter assigned specimens in the DerivateSearchView (fixes #4252)
Andreas Müller [Sun, 15 Jun 2014 10:09:54 +0000 (10:09 +0000)]
fixing failing security test due to stricter handling of correct sort index
Andreas Müller [Fri, 13 Jun 2014 13:32:02 +0000 (13:32 +0000)]
minor
Andreas Müller [Fri, 13 Jun 2014 10:02:26 +0000 (10:02 +0000)]
some java doc
Andreas Müller [Fri, 13 Jun 2014 09:46:45 +0000 (09:46 +0000)]
start bugfixing and refactoring sortindex handling in TaxonNode
Patric Plitzner [Wed, 11 Jun 2014 14:22:41 +0000 (14:22 +0000)]
- added null check
Patric Plitzner [Tue, 10 Jun 2014 11:46:10 +0000 (11:46 +0000)]
- added service method to term service that retrieves terms by TermType
Andreas Müller [Tue, 10 Jun 2014 09:52:56 +0000 (09:52 +0000)]
latest changes to taxonX import
Andreas Müller [Sat, 7 Jun 2014 21:00:38 +0000 (21:00 +0000)]
updates to taxonX import
Andreas Müller [Sat, 7 Jun 2014 13:45:40 +0000 (13:45 +0000)]
allow zoonames with year behind whitespace, not comma
Andreas Müller [Fri, 6 Jun 2014 20:58:06 +0000 (20:58 +0000)]
remove deprecated method
Andreas Müller [Fri, 6 Jun 2014 20:52:45 +0000 (20:52 +0000)]
latest updates to taxonX import
Andreas Müller [Fri, 6 Jun 2014 20:52:11 +0000 (20:52 +0000)]
better handling of countries in gathering unit
Andreas Müller [Fri, 6 Jun 2014 20:48:58 +0000 (20:48 +0000)]
remove generate title
Andreas Müller [Fri, 6 Jun 2014 20:47:29 +0000 (20:47 +0000)]
minor
Andreas Müller [Fri, 6 Jun 2014 20:45:24 +0000 (20:45 +0000)]
remove deprecated method
Andreas Müller [Fri, 6 Jun 2014 13:55:30 +0000 (13:55 +0000)]
fix matching for Integer #4229
Andreas Müller [Thu, 5 Jun 2014 14:03:27 +0000 (14:03 +0000)]
latest changes to TaxonX import
Andreas Müller [Thu, 5 Jun 2014 12:19:06 +0000 (12:19 +0000)]
minor
Andreas Müller [Tue, 3 Jun 2014 16:09:16 +0000 (16:09 +0000)]
fix "Error occurred when trying retrieve title for Named Area"
Andreas Müller [Tue, 3 Jun 2014 15:25:50 +0000 (15:25 +0000)]
latest changes to taxonX import
Andreas Müller [Tue, 3 Jun 2014 14:41:33 +0000 (14:41 +0000)]
minor
Patric Plitzner [Tue, 3 Jun 2014 14:35:08 +0000 (14:35 +0000)]
- made constructor protected to avoid JavaAssistEnhancementException (see https://stackoverflow.com/questions/
7273125/hibernate-envers-and-javassist-enhancement-failed-exception)
Patric Plitzner [Tue, 3 Jun 2014 14:33:00 +0000 (14:33 +0000)]
- fixed documentation
Patric Plitzner [Tue, 3 Jun 2014 06:38:13 +0000 (06:38 +0000)]
- deleted invalid assert statement
Andreas Müller [Mon, 2 Jun 2014 16:53:25 +0000 (16:53 +0000)]
fix for TaxonComparatorSearch
Patric Plitzner [Mon, 2 Jun 2014 13:51:04 +0000 (13:51 +0000)]
- completed implementation of querying for the original unit from a GBIF response
Patric Plitzner [Mon, 2 Jun 2014 09:41:52 +0000 (09:41 +0000)]
- added service methods for querying original record via BioCASE if found in GBIF response
Cherian Mathew [Fri, 30 May 2014 10:35:45 +0000 (10:35 +0000)]
corrected query to taxonUuid
edit-jenkins [Fri, 30 May 2014 07:56:35 +0000 (07:56 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Fri, 30 May 2014 07:56:31 +0000 (07:56 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.3.5
Katja Luther [Thu, 29 May 2014 20:47:01 +0000 (20:47 +0000)]
set sorting in getChildNodes optional & minor for delete in bulk editor
Andreas Müller [Wed, 28 May 2014 23:34:22 +0000 (23:34 +0000)]
improve to better fulfill the Comparator contract
Andreas Müller [Wed, 28 May 2014 23:21:21 +0000 (23:21 +0000)]
improve to better fulfill the Comparator contract
Andreas Müller [Wed, 28 May 2014 23:10:15 +0000 (23:10 +0000)]
improve TaxonComparator to better fulfill the general Comparator contract.
Andreas Müller [Wed, 28 May 2014 22:35:08 +0000 (22:35 +0000)]
further improve comparator contract implementation for TaxonComparatorSearch #4230
Andreas Müller [Wed, 28 May 2014 17:46:38 +0000 (17:46 +0000)]
remove logging
Andreas Müller [Wed, 28 May 2014 17:45:57 +0000 (17:45 +0000)]
fixing #4230, comparison issue
Patric Plitzner [Wed, 28 May 2014 14:09:53 +0000 (14:09 +0000)]
- extended GbifResponse and BioCase services to query for a single record with a specific unitID
Patric Plitzner [Wed, 28 May 2014 09:17:27 +0000 (09:17 +0000)]
- added workaround for year range queries because GBIF does not yet support eventDate as query parameter
Patric Plitzner [Wed, 28 May 2014 09:12:14 +0000 (09:12 +0000)]
- commented failing test
Patric Plitzner [Wed, 28 May 2014 08:56:29 +0000 (08:56 +0000)]
- added class GbifRespone which wraps one DerivedUnit returned of the parsed GBIF JSON response and the datasetKey to retrieve the original record
Andreas Müller [Tue, 27 May 2014 15:41:19 +0000 (15:41 +0000)]
fix all protected title caches
Cherian Mathew [Tue, 27 May 2014 13:46:49 +0000 (13:46 +0000)]
added occurrence search to main rest api page
Cherian Mathew [Tue, 27 May 2014 10:31:55 +0000 (10:31 +0000)]
OccurrenceCatalogueController : added check for uuid corresponding to accepted taxon
OccurrenceSearch : updated terms to be consistent
occurrence-catalogue-default : updated doc
Patric Plitzner [Tue, 27 May 2014 09:17:28 +0000 (09:17 +0000)]
- commented failing test
Patric Plitzner [Tue, 27 May 2014 08:23:28 +0000 (08:23 +0000)]
- extended test
- added workaround for commas in URL
- fixed parameter checking
Patric Plitzner [Mon, 26 May 2014 15:07:36 +0000 (15:07 +0000)]
- added limit to GBIF query
- added date format for date parameter
- added missing parameters for GBIF query
Patric Plitzner [Mon, 26 May 2014 10:32:25 +0000 (10:32 +0000)]
- implemented JSON parse logic for GBIF responses
- DerivedUnitFacades are created from the parsed results
- implemented/adapted test
Cherian Mathew [Fri, 23 May 2014 15:48:29 +0000 (15:48 +0000)]
added missing import
Cherian Mathew [Fri, 23 May 2014 15:47:38 +0000 (15:47 +0000)]
DerivedUnitFacade : added getRights method
OccurrenceCatalogueController : maintenance , clean up and added sources and rights to the init facade strategy
OccurrenceSearch : reverted back code for specimen related information
Cherian Mathew [Fri, 23 May 2014 08:00:24 +0000 (08:00 +0000)]
updated controller and search to optimise the code for retrieving all occurrences.
added apt doc for endpoint
Patric Plitzner [Thu, 22 May 2014 14:08:18 +0000 (14:08 +0000)]
- added dateFrom and dateTo to OccurrenceQuery
Alexander Oppermann [Thu, 22 May 2014 11:33:16 +0000 (11:33 +0000)]
Added new documentation for checklist controller and endpoints
Alexander Oppermann [Thu, 22 May 2014 11:30:31 +0000 (11:30 +0000)]
minor fixes for the checklist controller, now each endpoint can have a different documentation resource
Alexander Oppermann [Thu, 22 May 2014 11:25:54 +0000 (11:25 +0000)]
Changed project scpecific naming to a more generic one.
Alexander Oppermann [Thu, 22 May 2014 11:24:42 +0000 (11:24 +0000)]
Changed project scpecific naming to a more generic one.
Alexander Oppermann [Thu, 22 May 2014 11:08:03 +0000 (11:08 +0000)]
Changed project scpecific naming to a more generic one.
Alexander Oppermann [Thu, 22 May 2014 11:01:47 +0000 (11:01 +0000)]
Changed project scpecific naming to a more generic one.
Andreas Müller [Wed, 21 May 2014 14:44:50 +0000 (14:44 +0000)]
minor
Patric Plitzner [Wed, 21 May 2014 14:05:41 +0000 (14:05 +0000)]
- do not add query parameters for emtpy strings
Andreas Müller [Wed, 21 May 2014 13:22:10 +0000 (13:22 +0000)]
add size to includedTaxaDTO
Alexander Oppermann [Wed, 21 May 2014 12:17:17 +0000 (12:17 +0000)]
Added new Service Endpoint [cdmserverURL]/checklist/flockSearch for the new flockSearch webService
Andreas Müller [Wed, 21 May 2014 12:16:53 +0000 (12:16 +0000)]
use doubtful parameter in included taxon service
Andreas Müller [Wed, 21 May 2014 10:41:40 +0000 (10:41 +0000)]
use doubtful parameter in included taxon service
Cherian Mathew [Wed, 21 May 2014 10:25:06 +0000 (10:25 +0000)]
setting url when database, server or port update instead of when updating datasource bean.
Alexander Oppermann [Wed, 21 May 2014 09:22:43 +0000 (09:22 +0000)]
included skeleton for flockSearch
Cherian Mathew [Wed, 21 May 2014 07:57:39 +0000 (07:57 +0000)]
updating connection url for data source bean
Patric Plitzner [Wed, 21 May 2014 07:40:58 +0000 (07:40 +0000)]
- added gbif external service for querying GBIF
- added gbif and biocase service to new package
- added temporary test
Andreas Müller [Tue, 20 May 2014 16:50:59 +0000 (16:50 +0000)]
update listIncludedTaxa #4045
Andreas Müller [Tue, 20 May 2014 16:18:28 +0000 (16:18 +0000)]
implement listIncludedTaxa first version #4045
Andreas Müller [Tue, 20 May 2014 10:13:44 +0000 (10:13 +0000)]
minor
Andreas Müller [Tue, 20 May 2014 10:11:08 +0000 (10:11 +0000)]
better use of generics in service layer and persistence list methods
Andreas Müller [Tue, 20 May 2014 09:33:06 +0000 (09:33 +0000)]
remove deprecated method (cont.)
Katja Luther [Tue, 20 May 2014 09:20:33 +0000 (09:20 +0000)]
add description for loadChildNodesOfTaxonNode
Andreas Müller [Tue, 20 May 2014 09:16:30 +0000 (09:16 +0000)]
remove deprecated method
Andreas Müller [Tue, 20 May 2014 09:10:30 +0000 (09:10 +0000)]
minor
Andreas Müller [Tue, 20 May 2014 09:05:22 +0000 (09:05 +0000)]
updates to Tcs import
Andreas Müller [Fri, 16 May 2014 12:13:54 +0000 (12:13 +0000)]
improve includeAllSubareas
Andreas Müller [Fri, 16 May 2014 12:10:34 +0000 (12:10 +0000)]
minor
Andreas Müller [Fri, 16 May 2014 12:10:00 +0000 (12:10 +0000)]
null handling for taxon names in nomSortOrderBrdige
Andreas Müller [Fri, 16 May 2014 11:48:16 +0000 (11:48 +0000)]
preliminary FK test