cdmlib.git
2 years agocleanup
Andreas Müller [Wed, 29 Sep 2021 08:00:24 +0000 (10:00 +0200)]
cleanup

2 years agoadd stacktrace handling for StructuredDescriptionAggregationTest (cont.)
Andreas Müller [Wed, 29 Sep 2021 07:04:06 +0000 (09:04 +0200)]
add stacktrace handling for StructuredDescriptionAggregationTest (cont.)

2 years agocleanup UpdateResult
Andreas Müller [Wed, 29 Sep 2021 07:03:48 +0000 (09:03 +0200)]
cleanup UpdateResult

2 years agoadd stacktrace handling for StructuredDescriptionAggregationTest
Andreas Müller [Wed, 29 Sep 2021 06:44:13 +0000 (08:44 +0200)]
add stacktrace handling for StructuredDescriptionAggregationTest

2 years agoref #9795 add literature descriptions to matrix aggregation
Andreas Müller [Tue, 28 Sep 2021 21:21:01 +0000 (23:21 +0200)]
ref #9795 add literature descriptions to matrix aggregation

2 years agominor issues for StructuredDescriptionAggregationTest
Andreas Müller [Tue, 28 Sep 2021 11:48:21 +0000 (13:48 +0200)]
minor issues for StructuredDescriptionAggregationTest

2 years agofix #9790 remove highest status only for DDS source aggregation
Andreas Müller [Mon, 27 Sep 2021 13:37:41 +0000 (15:37 +0200)]
fix #9790  remove highest status only for DDS source aggregation

2 years agocode cleaning
Katja Luther [Fri, 24 Sep 2021 12:49:21 +0000 (14:49 +0200)]
code cleaning

2 years agoref #9772: fix problems with more than one description for one taxon
Katja Luther [Fri, 24 Sep 2021 07:55:28 +0000 (09:55 +0200)]
ref #9772: fix problems with more than one description for one taxon

2 years agofix #9786 implement CY and fix PY for RIS import (and fix Source handling for in...
Andreas Müller [Thu, 23 Sep 2021 15:25:57 +0000 (17:25 +0200)]
fix #9786 implement CY and fix PY for RIS import (and fix Source handling for in-references)

2 years agoref #9772: avoid another NPE
Katja Luther [Thu, 23 Sep 2021 14:21:34 +0000 (16:21 +0200)]
ref #9772: avoid another NPE

2 years agoCleanup RIS and Endnote tests
Andreas Müller [Thu, 23 Sep 2021 12:56:13 +0000 (14:56 +0200)]
Cleanup RIS and Endnote tests

2 years agoref #9772: avoid NPE
Katja Luther [Thu, 23 Sep 2021 11:49:46 +0000 (13:49 +0200)]
ref #9772: avoid NPE

2 years agoref #6387 add code validation for cultivar group epi
Andreas Müller [Thu, 23 Sep 2021 11:06:08 +0000 (13:06 +0200)]
ref #6387 add code validation for cultivar group epi

2 years agoref #9772: fix getting taxonRowWrapper - continue
Katja Luther [Thu, 23 Sep 2021 09:03:29 +0000 (11:03 +0200)]
ref #9772: fix getting taxonRowWrapper - continue

2 years agoref #9772: fix getting taxonRowWrapper
Katja Luther [Thu, 23 Sep 2021 08:30:38 +0000 (10:30 +0200)]
ref #9772: fix getting taxonRowWrapper

2 years agoref #9477 fix term loading for ordered new terms
Andreas Müller [Thu, 23 Sep 2021 08:22:31 +0000 (10:22 +0200)]
ref #9477 fix term loading for ordered new terms

2 years agofix incorrect previousUpdater info in 5.27.0_5.27.1
Andreas Müller [Thu, 23 Sep 2021 07:45:14 +0000 (09:45 +0200)]
fix incorrect previousUpdater info in 5.27.0_5.27.1

2 years agoref #9762, ref #9755 Add nameCache annotation to cultivar fields
Andreas Müller [Thu, 23 Sep 2021 07:02:36 +0000 (09:02 +0200)]
ref #9762, ref #9755 Add nameCache annotation to cultivar fields

2 years agoref #9778, ref #9782 fix parsing for (sub)proles
Andreas Müller [Wed, 22 Sep 2021 17:03:26 +0000 (19:03 +0200)]
ref #9778, ref #9782 fix parsing for (sub)proles

2 years agoref #9757 add test for parsing into existing name
Andreas Müller [Wed, 22 Sep 2021 15:57:04 +0000 (17:57 +0200)]
ref #9757 add test for parsing into existing name

2 years agoref #9754 fix tests
Andreas Müller [Wed, 22 Sep 2021 15:56:43 +0000 (17:56 +0200)]
ref #9754 fix tests

2 years agoref #9754 fix appended phrase handling in cultivar formatter (cont.)
Andreas Müller [Wed, 22 Sep 2021 15:32:48 +0000 (17:32 +0200)]
ref #9754 fix appended phrase handling in cultivar formatter (cont.)

2 years agoref #9754 fix appended phrase handling in cultivar formatter
Andreas Müller [Wed, 22 Sep 2021 15:26:04 +0000 (17:26 +0200)]
ref #9754 fix appended phrase handling in cultivar formatter

2 years agoref #9755 add DENOMINATIONCLASS to isCultivar()
Andreas Müller [Wed, 22 Sep 2021 14:48:19 +0000 (16:48 +0200)]
ref #9755 add DENOMINATIONCLASS to isCultivar()

2 years agoref #9782 adapt abbreviation for proles - adapt tests
Andreas Müller [Wed, 22 Sep 2021 12:58:21 +0000 (14:58 +0200)]
ref #9782 adapt abbreviation for proles - adapt tests

2 years agoref #9782 adapt abbreviation for proles
Andreas Müller [Wed, 22 Sep 2021 12:44:04 +0000 (14:44 +0200)]
ref #9782 adapt abbreviation for proles

2 years agofix CdmUpdater to correct version
Andreas Müller [Wed, 22 Sep 2021 12:29:01 +0000 (14:29 +0200)]
fix CdmUpdater to correct version

2 years agoref #9755 update script for grex infraspec. representation
Andreas Müller [Wed, 22 Sep 2021 12:14:12 +0000 (14:14 +0200)]
ref #9755 update script for grex infraspec. representation

2 years agoref #6387 test that convar is not a cultivar
Andreas Müller [Wed, 22 Sep 2021 12:05:17 +0000 (14:05 +0200)]
ref #6387  test that convar is not a cultivar

2 years agoref #9771Additional ignore on seupClass, just in case
Andreas Müller [Wed, 22 Sep 2021 12:04:29 +0000 (14:04 +0200)]
ref #9771Additional ignore on seupClass, just in case

2 years agoref #9771 first incomplete version of Cdm2CdmVocabularyImport (cont.)
Andreas Müller [Wed, 22 Sep 2021 10:45:13 +0000 (12:45 +0200)]
ref #9771 first incomplete version of Cdm2CdmVocabularyImport (cont.)

2 years agocleanup
Andreas Müller [Wed, 22 Sep 2021 10:20:05 +0000 (12:20 +0200)]
cleanup

2 years agoref #9771 first incomplete version of Cdm2CdmVocabularyImport
Andreas Müller [Wed, 22 Sep 2021 10:19:55 +0000 (12:19 +0200)]
ref #9771 first incomplete version of Cdm2CdmVocabularyImport

2 years agoref #9778, ref #9755, ref #9754, ref # 9757 split grex and add new ranks lusus, subpr...
Andreas Müller [Wed, 22 Sep 2021 10:03:31 +0000 (12:03 +0200)]
ref #9778, ref #9755, ref #9754, ref # 9757 split grex and add new ranks lusus, subproles and subgrex

2 years agoref #9772: fix missing unit
Katja Luther [Wed, 22 Sep 2021 06:59:31 +0000 (08:59 +0200)]
ref #9772: fix missing unit

2 years agoref #9754 handle infraspecific epithets better
Andreas Müller [Tue, 21 Sep 2021 20:44:46 +0000 (22:44 +0200)]
ref #9754 handle infraspecific epithets better

2 years agoref #9754 handle null values for cultivar epis better
Andreas Müller [Tue, 21 Sep 2021 19:52:50 +0000 (21:52 +0200)]
ref #9754 handle null values for cultivar epis better

2 years agocleanup
Andreas Müller [Tue, 21 Sep 2021 19:52:12 +0000 (21:52 +0200)]
cleanup

2 years agoref #9757 fix emptying name before parsing
Andreas Müller [Tue, 21 Sep 2021 18:59:34 +0000 (20:59 +0200)]
ref #9757 fix emptying name before parsing

2 years agoref #9757 fix cultivar parser test
Andreas Müller [Tue, 21 Sep 2021 18:05:18 +0000 (20:05 +0200)]
ref #9757 fix cultivar parser test

2 years agoref #9754 support author and nom. ref. handling for cultivar formatting
Andreas Müller [Tue, 21 Sep 2021 17:56:45 +0000 (19:56 +0200)]
ref #9754 support author and nom. ref. handling for cultivar formatting

2 years agoref #9757 improve cultivar parser
Andreas Müller [Tue, 21 Sep 2021 17:33:12 +0000 (19:33 +0200)]
ref #9757 improve cultivar parser

* parse with referencedName()
* include author parsing
* include nom. ref. parsing

2 years agocleanup
Andreas Müller [Tue, 21 Sep 2021 15:12:30 +0000 (17:12 +0200)]
cleanup

2 years agoref #9772: smaller changes
Katja Luther [Tue, 21 Sep 2021 14:02:19 +0000 (16:02 +0200)]
ref #9772: smaller changes

2 years agoref #9772: deproxy the term in getTermByClassAndUUID
Katja Luther [Tue, 21 Sep 2021 13:41:20 +0000 (15:41 +0200)]
ref #9772: deproxy the term in getTermByClassAndUUID

2 years agoref #7099 documentation on the intendet purpose of CdmAuthority
Andreas Kohlbecker [Tue, 21 Sep 2021 11:57:25 +0000 (13:57 +0200)]
ref #7099 documentation on the intendet purpose of CdmAuthority

2 years agoref #7099 javadoc added to CdmAuthority
Andreas Müller [Tue, 21 Sep 2021 11:04:15 +0000 (13:04 +0200)]
ref #7099 javadoc added to CdmAuthority

2 years agoref #7099 implement toString and isEqual for CdmAuthority
Andreas Müller [Tue, 21 Sep 2021 10:44:39 +0000 (12:44 +0200)]
ref #7099 implement toString and isEqual for CdmAuthority

2 years agocleanup
Andreas Müller [Tue, 21 Sep 2021 10:30:59 +0000 (12:30 +0200)]
cleanup

2 years agoref #9710: avoid NPEs
Katja Luther [Mon, 20 Sep 2021 08:10:51 +0000 (10:10 +0200)]
ref #9710: avoid NPEs

2 years agoref #9758 application.properties for the production environement
Andreas Kohlbecker [Mon, 20 Sep 2021 08:05:19 +0000 (10:05 +0200)]
ref #9758  application.properties for the production environement

2 years agofix #825 rename method that searches by representation label in term dao
Andreas Müller [Fri, 17 Sep 2021 08:24:10 +0000 (10:24 +0200)]
fix #825 rename method that searches by representation label in term dao

2 years agominor
Andreas Müller [Fri, 17 Sep 2021 08:23:04 +0000 (10:23 +0200)]
minor

2 years agocleanup
Andreas Müller [Fri, 17 Sep 2021 08:00:55 +0000 (10:00 +0200)]
cleanup

2 years agoref #9014 allow any word with number as detail in parser
Andreas Müller [Fri, 17 Sep 2021 08:00:45 +0000 (10:00 +0200)]
ref #9014 allow any word with number as detail in parser

2 years agocleanup
Andreas Müller [Fri, 17 Sep 2021 05:52:25 +0000 (07:52 +0200)]
cleanup

2 years agocleanup
Andreas Müller [Fri, 17 Sep 2021 05:50:07 +0000 (07:50 +0200)]
cleanup

2 years agoref #9758 try to fix dependency issue in mailing test dependencies
Andreas Müller [Fri, 17 Sep 2021 05:26:12 +0000 (07:26 +0200)]
ref #9758 try to fix dependency issue in mailing test dependencies

2 years agocleanup
Andreas Müller [Fri, 17 Sep 2021 05:02:23 +0000 (07:02 +0200)]
cleanup

2 years agoref #9758 option to define custom configurations in test and production systems#
Andreas Kohlbecker [Thu, 16 Sep 2021 15:10:14 +0000 (17:10 +0200)]
ref #9758 option to define custom configurations in test and production systems#

2 years agoref #9758 configuration for sending emails with smtp properties
Andreas Kohlbecker [Thu, 16 Sep 2021 14:40:30 +0000 (16:40 +0200)]
ref #9758 configuration for sending emails with smtp properties

2 years agofix #9758 configuration for sending emails with JavaMailSenderImpl
Andreas Kohlbecker [Thu, 16 Sep 2021 13:44:16 +0000 (15:44 +0200)]
fix #9758 configuration for sending emails with JavaMailSenderImpl

2 years agonote on manual anttask execution
Andreas Kohlbecker [Tue, 14 Sep 2021 19:09:23 +0000 (21:09 +0200)]
note on manual anttask execution

2 years agoupdate cached cdm mapping to 5.27.0
Andreas Müller [Thu, 16 Sep 2021 10:02:05 +0000 (12:02 +0200)]
update cached cdm mapping to 5.27.0

2 years agoupdate cdmlib test H2 to 5.27.0
Andreas Müller [Thu, 16 Sep 2021 09:09:49 +0000 (11:09 +0200)]
update cdmlib test H2 to 5.27.0

2 years agominor
Andreas Müller [Thu, 16 Sep 2021 09:04:52 +0000 (11:04 +0200)]
minor

2 years agochange to model version 5.27.0
Andreas Müller [Thu, 16 Sep 2021 08:59:03 +0000 (10:59 +0200)]
change to model version 5.27.0

2 years agoref #9761 move cultivar info to new group field where necessary
Andreas Müller [Thu, 16 Sep 2021 08:58:30 +0000 (10:58 +0200)]
ref #9761 move cultivar info to new group field where necessary

2 years agoref #7640 fix update script for ISO country update
Andreas Müller [Thu, 16 Sep 2021 08:57:16 +0000 (10:57 +0200)]
ref #7640 fix update script for ISO country update

2 years agoref #9755 update cultivarName->cultivarEpithet
Andreas Müller [Thu, 16 Sep 2021 08:55:52 +0000 (10:55 +0200)]
ref #9755 update cultivarName->cultivarEpithet

2 years agoref #7640 include titleCache for country label update
Andreas Müller [Wed, 15 Sep 2021 22:43:15 +0000 (00:43 +0200)]
ref #7640 include titleCache for country label update

2 years agoref #9757 fix cultivar group parser text encoding
Andreas Müller [Wed, 15 Sep 2021 21:20:19 +0000 (23:20 +0200)]
ref #9757 fix cultivar group parser text encoding

2 years agocleanup
Andreas Müller [Wed, 15 Sep 2021 21:19:25 +0000 (23:19 +0200)]
cleanup

2 years agoref #7640, ref #4209 update country labels and split label from official title (still...
Andreas Müller [Wed, 15 Sep 2021 21:19:07 +0000 (23:19 +0200)]
ref #7640, ref #4209 update country labels and split label from official title (still handled in description)

2 years agoref #9755 add abbrev to cultivar group representation
Andreas Müller [Wed, 15 Sep 2021 19:35:15 +0000 (21:35 +0200)]
ref #9755 add abbrev to cultivar group representation

2 years agoref #9761 add cultivarGroup column
Andreas Müller [Wed, 15 Sep 2021 11:59:13 +0000 (13:59 +0200)]
ref #9761 add cultivarGroup column

2 years agoref #9710: switch to dtos for descriptive data set and descriptions for character...
Katja Luther [Wed, 15 Sep 2021 10:28:43 +0000 (12:28 +0200)]
ref #9710: switch to dtos for descriptive data set and descriptions for character matrix

2 years agofix #9759 fix not existing protectedCache field in persistence matcher
Andreas Müller [Wed, 15 Sep 2021 09:30:13 +0000 (11:30 +0200)]
fix #9759 fix not existing protectedCache field in persistence matcher

2 years agofix #9759 fix missing deduplication for parsed person (and maybe also team)
Andreas Müller [Wed, 15 Sep 2021 08:55:36 +0000 (10:55 +0200)]
fix #9759 fix missing deduplication for parsed person (and maybe also team)

2 years agocleanup
Andreas Müller [Wed, 15 Sep 2021 08:42:06 +0000 (10:42 +0200)]
cleanup

2 years agoref #9757 further improve cultivar parsing
Andreas Müller [Tue, 14 Sep 2021 12:33:32 +0000 (14:33 +0200)]
ref #9757 further improve cultivar parsing

2 years agocleanup
Andreas Müller [Tue, 14 Sep 2021 12:32:37 +0000 (14:32 +0200)]
cleanup

2 years agoref #9754 , ref #9757 further improve cultivar name parsing and formatting
Andreas Müller [Tue, 14 Sep 2021 10:34:52 +0000 (12:34 +0200)]
ref #9754 , ref #9757 further improve cultivar name parsing and formatting

2 years agoref #9757 first implementation of cultivar parsing
Andreas Müller [Tue, 14 Sep 2021 07:49:24 +0000 (09:49 +0200)]
ref #9757 first implementation of cultivar parsing

2 years agocleanup
Andreas Müller [Tue, 14 Sep 2021 07:45:43 +0000 (09:45 +0200)]
cleanup

2 years agoref #9754 first implementation for cultivar formatter
Andreas Müller [Tue, 14 Sep 2021 07:43:45 +0000 (09:43 +0200)]
ref #9754 first implementation for cultivar formatter

2 years agoref #9747 add getCdmVocabularyUuids to Language
Andreas Müller [Mon, 13 Sep 2021 11:39:38 +0000 (13:39 +0200)]
ref #9747 add getCdmVocabularyUuids to Language

2 years agoref #9747 add getCdmVocabularyUuids to Language
Andreas Müller [Mon, 13 Sep 2021 11:26:22 +0000 (13:26 +0200)]
ref #9747 add getCdmVocabularyUuids to Language

2 years agocleanup
Andreas Müller [Mon, 13 Sep 2021 11:09:56 +0000 (13:09 +0200)]
cleanup

2 years agoimprove attribute names and handle all name identifier in cdmlight
Katja Luther [Thu, 9 Sep 2021 12:08:55 +0000 (14:08 +0200)]
improve attribute names and handle all name identifier in cdmlight

2 years agoref #9752 make it possible to add source with original information for imports
Andreas Müller [Thu, 9 Sep 2021 11:22:18 +0000 (13:22 +0200)]
ref #9752 make it possible to add source with original information for imports

2 years agoref #7646 , ref #9752 make "hort." parseable
Andreas Müller [Thu, 9 Sep 2021 11:21:35 +0000 (13:21 +0200)]
ref #7646 , ref #9752 make "hort." parseable

2 years agoref #9752 remove warning for getTitleWithoutYearAndAuthor for some refTypes
Andreas Müller [Thu, 9 Sep 2021 11:13:13 +0000 (13:13 +0200)]
ref #9752 remove warning for getTitleWithoutYearAndAuthor for some refTypes

2 years agofix #9706 reducing field visibility of sections to authors, pages and inReference
Andreas Kohlbecker [Thu, 9 Sep 2021 10:36:56 +0000 (12:36 +0200)]
fix #9706 reducing field visibility of sections to authors, pages and inReference

2 years agoref #9701 method to find the highest type status in a TypeDesignationWorkingSet
Andreas Kohlbecker [Thu, 9 Sep 2021 08:38:41 +0000 (10:38 +0200)]
ref #9701 method to find the highest type status in a TypeDesignationWorkingSet

2 years agoref #9701 taggedText to string method with exclude option
Andreas Kohlbecker [Thu, 9 Sep 2021 08:33:43 +0000 (10:33 +0200)]
ref #9701 taggedText to string method with exclude option

2 years ago fix #8438 removing all featureTree/* web services
Andreas Kohlbecker [Wed, 8 Sep 2021 12:16:49 +0000 (14:16 +0200)]
 fix #8438 removing all featureTree/* web services

2 years agoref #9747 add language to TermType.getEmptyDefinedTermBase
Andreas Müller [Tue, 7 Sep 2021 13:28:37 +0000 (15:28 +0200)]
ref #9747 add language to TermType.getEmptyDefinedTermBase

2 years agocleanup
Andreas Müller [Fri, 3 Sep 2021 09:18:45 +0000 (11:18 +0200)]
cleanup