cdmlib.git
10 months agoref #10394 cleanup code after fix
Andreas Müller [Thu, 19 Oct 2023 12:13:26 +0000 (14:13 +0200)]
ref #10394 cleanup code after fix

10 months agoref #10394 remove null check for HibernateProxyHelper.deproxy
Andreas Müller [Thu, 19 Oct 2023 11:11:35 +0000 (13:11 +0200)]
ref #10394 remove null check for HibernateProxyHelper.deproxy

10 months agoref #10385, ref #10387 add transliteration to CommonNameDto
Andreas Müller [Wed, 18 Oct 2023 13:17:18 +0000 (15:17 +0200)]
ref #10385, ref #10387 add transliteration to CommonNameDto

10 months agoref #10394: fix QuantitativeDataDescriptionBuilder
Katja [Wed, 18 Oct 2023 09:48:02 +0000 (11:48 +0200)]
ref #10394: fix QuantitativeDataDescriptionBuilder

10 months agoref #10410: adapt test
Katja Luther [Tue, 17 Oct 2023 16:34:44 +0000 (18:34 +0200)]
ref #10410: adapt test

10 months agoref #10410: adapt dto creation
Katja Luther [Tue, 17 Oct 2023 13:01:16 +0000 (15:01 +0200)]
ref #10410: adapt dto creation

10 months agoref #10397: check also for typespecimen
Katja [Tue, 17 Oct 2023 10:25:48 +0000 (12:25 +0200)]
ref #10397: check also  for typespecimen

10 months agoref #10397: add check for IndividualsAssociation
Katja Luther [Mon, 16 Oct 2023 10:59:54 +0000 (12:59 +0200)]
ref #10397: add check for IndividualsAssociation

10 months agoref #10397: revert continue
Katja Luther [Fri, 13 Oct 2023 05:52:50 +0000 (07:52 +0200)]
ref #10397: revert continue

10 months agoref #10397: revert last changes - continue
Katja Luther [Thu, 12 Oct 2023 10:47:02 +0000 (12:47 +0200)]
ref #10397: revert last changes - continue

10 months agoref #2975 for label for not interpretable
Andreas Müller [Thu, 12 Oct 2023 10:24:27 +0000 (12:24 +0200)]
ref #2975 for label for not interpretable

10 months agoref #10397: revert last changes
Katja Luther [Thu, 12 Oct 2023 08:39:32 +0000 (10:39 +0200)]
ref #10397: revert last changes

10 months agoref #10398: adapt test to new configurator attribute
Katja Luther [Thu, 12 Oct 2023 06:48:07 +0000 (08:48 +0200)]
ref #10398: adapt test to new configurator attribute

10 months agoref #10398: importing specimen/taxon rel depending on configurator
Katja Luther [Wed, 11 Oct 2023 12:37:52 +0000 (14:37 +0200)]
ref #10398: importing specimen/taxon rel depending on configurator

10 months agoref #10398: smaller changes in SpecimenImportConfigurator
Katja Luther [Wed, 11 Oct 2023 11:11:07 +0000 (13:11 +0200)]
ref #10398: smaller changes in SpecimenImportConfigurator

10 months agoref #10397: check for taxon associations
Katja Luther [Wed, 11 Oct 2023 07:12:05 +0000 (09:12 +0200)]
ref #10397: check for taxon associations

11 months agoref #5973: add new preference predicate for description handling in
Katja Luther [Tue, 10 Oct 2023 13:08:49 +0000 (15:08 +0200)]
ref #5973: add new preference predicate for description handling in
distr editor

11 months agofix potential NPE in DistributionAggregation
Andreas Müller [Tue, 10 Oct 2023 09:40:22 +0000 (11:40 +0200)]
fix potential NPE in DistributionAggregation

11 months agocleanup
Andreas Müller [Mon, 9 Oct 2023 15:05:12 +0000 (17:05 +0200)]
cleanup

11 months agoref #7922: collect all descriptions containing distributions except
Katja Luther [Mon, 9 Oct 2023 09:24:36 +0000 (11:24 +0200)]
ref #7922: collect all descriptions containing distributions except
computed ones

11 months agoref #5973: use default description for distribution editor
Katja Luther [Fri, 6 Oct 2023 08:37:07 +0000 (10:37 +0200)]
ref #5973: use default description for distribution editor

11 months agoref #10410: ignore computed descriptions for distribution editor
Katja Luther [Thu, 5 Oct 2023 07:39:25 +0000 (09:39 +0200)]
ref #10410: ignore computed descriptions for distribution editor

11 months agofix error in language handling in termDto
Katja Luther [Wed, 4 Oct 2023 12:16:22 +0000 (14:16 +0200)]
fix error in language handling in termDto

11 months agoref #10364: add language parameter for rowWrapper creation
Katja Luther [Wed, 4 Oct 2023 12:14:46 +0000 (14:14 +0200)]
ref #10364: add language parameter for rowWrapper creation

11 months agoref #10178 add configurator and matching result to name matching
Andreas Müller [Wed, 4 Oct 2023 10:36:14 +0000 (12:36 +0200)]
ref #10178 add configurator and matching result to name matching

11 months agocleanup
Andreas Müller [Wed, 4 Oct 2023 10:20:54 +0000 (12:20 +0200)]
cleanup

11 months agoadapt to moved dtos
Katja Luther [Wed, 4 Oct 2023 07:42:37 +0000 (09:42 +0200)]
adapt to moved dtos

11 months agoref #10364: adapt dtos and dto handling to using modifiers
Katja Luther [Wed, 4 Oct 2023 07:26:25 +0000 (09:26 +0200)]
ref #10364: adapt dtos and dto handling to using modifiers

11 months agoclean up
Belen Escobari [Tue, 3 Oct 2023 11:58:50 +0000 (13:58 +0200)]
clean up

11 months agoadd distributionStatusColors computation as commented code
Andreas Müller [Fri, 29 Sep 2023 18:56:54 +0000 (20:56 +0200)]
add distributionStatusColors computation as commented code

11 months agocleanup
Andreas Müller [Fri, 29 Sep 2023 18:45:49 +0000 (20:45 +0200)]
cleanup

11 months agocleanup
Andreas Müller [Thu, 28 Sep 2023 19:18:28 +0000 (21:18 +0200)]
cleanup

11 months agotruncate nameCache if necessary
Andreas Müller [Thu, 28 Sep 2023 16:38:48 +0000 (18:38 +0200)]
truncate nameCache if necessary

11 months agocleanup
Andreas Müller [Thu, 28 Sep 2023 10:46:49 +0000 (12:46 +0200)]
cleanup

11 months agoref #9771 fix recursive graph update
Andreas Müller [Mon, 25 Sep 2023 17:40:56 +0000 (19:40 +0200)]
ref #9771 fix recursive graph update

11 months agocleanup
Andreas Müller [Mon, 25 Sep 2023 17:39:13 +0000 (19:39 +0200)]
cleanup

11 months agocleanup
Andreas Müller [Fri, 22 Sep 2023 13:54:28 +0000 (15:54 +0200)]
cleanup

11 months agoref #9771 try to fix path issue on linux
Andreas Müller [Fri, 22 Sep 2023 13:38:45 +0000 (15:38 +0200)]
ref #9771 try to fix path issue on linux

11 months agocleanup
Andreas Müller [Fri, 22 Sep 2023 13:13:45 +0000 (15:13 +0200)]
cleanup

11 months agoref #9771 use system tmp directory for other repository and split graph test
Andreas Müller [Fri, 22 Sep 2023 13:12:29 +0000 (15:12 +0200)]
ref #9771 use system tmp directory for other repository and split graph test

11 months agoref #10178 replace DoubleResult by SingleNameMatchingResult
Andreas Müller [Fri, 22 Sep 2023 10:06:07 +0000 (12:06 +0200)]
ref #10178 replace DoubleResult by SingleNameMatchingResult

11 months agoref #10178 some comments and code cleaning for name matching
Andreas Müller [Fri, 22 Sep 2023 09:41:25 +0000 (11:41 +0200)]
ref #10178 some comments and code cleaning for name matching

11 months agoclean up line endings etc.
Andreas Müller [Fri, 22 Sep 2023 09:39:25 +0000 (11:39 +0200)]
clean up line endings etc.

11 months agoref #9771 fix configurator setting for adding terms in Cdm2CdmVocabularyImportTest
Andreas Müller [Thu, 21 Sep 2023 20:10:09 +0000 (22:10 +0200)]
ref #9771 fix configurator setting for adding terms in Cdm2CdmVocabularyImportTest

11 months agoref #9771 fix configurator setting in Cdm2CdmVocabularyImportTest
Andreas Müller [Thu, 21 Sep 2023 19:55:31 +0000 (21:55 +0200)]
ref #9771 fix configurator setting in Cdm2CdmVocabularyImportTest

11 months agoref #9771 , ref #10133 implement add missing terms for term trees
Andreas Müller [Thu, 21 Sep 2023 13:35:32 +0000 (15:35 +0200)]
ref #9771 , ref #10133 implement add missing terms for term trees

11 months agoref #9771 , ref #10133 allow configuation for addMissingTerms
Andreas Müller [Thu, 21 Sep 2023 13:34:17 +0000 (15:34 +0200)]
ref #9771 , ref #10133 allow configuation for addMissingTerms

11 months agoref #9771 , ref #10133 allow importing graphs with partial vocabularies (javadoc)
Andreas Müller [Thu, 21 Sep 2023 13:33:10 +0000 (15:33 +0200)]
ref #9771 , ref #10133 allow importing graphs with partial vocabularies (javadoc)

11 months agocleanup
Andreas Müller [Thu, 21 Sep 2023 13:22:41 +0000 (15:22 +0200)]
cleanup

11 months agoref #10401 adapt NomenclaturalStatusTypeIczn terms in csv
Andreas Müller [Thu, 21 Sep 2023 13:15:06 +0000 (15:15 +0200)]
ref #10401 adapt NomenclaturalStatusTypeIczn terms in csv

11 months agoupdate labels for some statistical measures (cont.)
Andreas Müller [Thu, 21 Sep 2023 12:48:03 +0000 (14:48 +0200)]
update labels for some statistical measures (cont.)

11 months agoupdate labels for some statistical measures
Andreas Müller [Thu, 21 Sep 2023 12:40:55 +0000 (14:40 +0200)]
update labels for some statistical measures

11 months agoref #10324 add filter for heterotypic synonyms
Andreas Müller [Thu, 21 Sep 2023 08:36:48 +0000 (10:36 +0200)]
ref #10324 add filter for heterotypic synonyms

11 months agoref #10324 fix mapping for nomenclatural status
Andreas Müller [Thu, 21 Sep 2023 08:35:54 +0000 (10:35 +0200)]
ref #10324 fix mapping for nomenclatural status

11 months agoref #10324 add source to endemics
Andreas Müller [Thu, 21 Sep 2023 08:35:03 +0000 (10:35 +0200)]
ref #10324 add source to endemics

11 months agocleanup
Andreas Müller [Thu, 21 Sep 2023 08:18:59 +0000 (10:18 +0200)]
cleanup

11 months agoref #10393: fix handling of specimen determined to synonyms in two
Katja Luther [Tue, 12 Sep 2023 11:45:00 +0000 (13:45 +0200)]
ref #10393: fix handling of specimen determined to synonyms in two
classifications

12 months agoref #10385 add transliteration to coldp export
Andreas Müller [Thu, 7 Sep 2023 16:52:18 +0000 (18:52 +0200)]
ref #10385 add transliteration to coldp export

12 months agoUpdating develop poms back to pre merge state
jenkins [Thu, 7 Sep 2023 15:30:28 +0000 (17:30 +0200)]
Updating develop poms back to pre merge state

12 months agoMerge branch 'master' into develop
jenkins [Thu, 7 Sep 2023 15:30:27 +0000 (17:30 +0200)]
Merge branch 'master' into develop

12 months agoupdating develop poms to master versions to avoid merge conflicts
jenkins [Thu, 7 Sep 2023 15:30:26 +0000 (17:30 +0200)]
updating develop poms to master versions to avoid merge conflicts

12 months agoMerge branch 'release/5.40.0' 5.40.0
jenkins [Thu, 7 Sep 2023 15:30:19 +0000 (17:30 +0200)]
Merge branch 'release/5.40.0'

12 months agoupdating poms for branch'release/5.40.0' with non-snapshot versions
jenkins [Thu, 7 Sep 2023 15:17:42 +0000 (17:17 +0200)]
updating poms for branch'release/5.40.0' with non-snapshot versions

12 months agoupdating poms for 5.41.0-SNAPSHOT development
jenkins [Thu, 7 Sep 2023 14:19:36 +0000 (16:19 +0200)]
updating poms for 5.41.0-SNAPSHOT development

12 months agocleanup
Andreas Müller [Thu, 7 Sep 2023 14:17:12 +0000 (16:17 +0200)]
cleanup

12 months agoexternally managed needs to be set before rootNodeDto
Katja Luther [Thu, 7 Sep 2023 10:34:59 +0000 (12:34 +0200)]
externally managed needs to be set before rootNodeDto

12 months agominor
Katja Luther [Wed, 6 Sep 2023 20:18:41 +0000 (22:18 +0200)]
minor

12 months agoadd tree attributes to nodeDto
Katja Luther [Wed, 6 Sep 2023 20:17:41 +0000 (22:17 +0200)]
add tree attributes to nodeDto

12 months agoref #10178: matching names including infraspecific.
Belen Escobari [Wed, 6 Sep 2023 12:00:16 +0000 (14:00 +0200)]
ref  #10178: matching names including infraspecific.

12 months agocleanup
Andreas Müller [Wed, 6 Sep 2023 11:48:18 +0000 (13:48 +0200)]
cleanup

12 months agoref #10384 move useClassification to more specific configurators where needed
Andreas Müller [Wed, 6 Sep 2023 11:47:40 +0000 (13:47 +0200)]
ref #10384 move useClassification to more specific configurators where needed

12 months agocleanup
Andreas Müller [Wed, 6 Sep 2023 11:35:12 +0000 (13:35 +0200)]
cleanup

12 months agocleanup
Andreas Müller [Wed, 6 Sep 2023 11:35:12 +0000 (13:35 +0200)]
cleanup

12 months agoref #10382: remove '-' from collectorsstring
Katja [Wed, 6 Sep 2023 07:56:16 +0000 (09:56 +0200)]
ref #10382: remove '-' from collectorsstring

12 months agocleanup
Andreas Müller [Tue, 5 Sep 2023 17:05:44 +0000 (19:05 +0200)]
cleanup

12 months agofix #10379 deduplication of herbarium code removed in DerivedUnitFacadeCacheStrategy
Andreas Müller [Tue, 5 Sep 2023 17:05:11 +0000 (19:05 +0200)]
fix #10379 deduplication of herbarium code removed in DerivedUnitFacadeCacheStrategy

12 months agoref #10271 remove unnecessary parameters from COL-DP export configurator (cont.)...
Andreas Müller [Tue, 5 Sep 2023 09:16:59 +0000 (11:16 +0200)]
ref #10271 remove unnecessary parameters from COL-DP export configurator (cont.) and set createZipFile to true

12 months agoref #10271 remove unnecessary parameters from COL-DP export configurator
Andreas Müller [Tue, 5 Sep 2023 08:57:37 +0000 (10:57 +0200)]
ref #10271 remove unnecessary parameters from COL-DP export configurator

12 months agoadd Serializable to export transformers
Andreas Müller [Tue, 5 Sep 2023 08:43:45 +0000 (10:43 +0200)]
add Serializable to export transformers

12 months agocleanup
Andreas Müller [Tue, 5 Sep 2023 08:38:27 +0000 (10:38 +0200)]
cleanup

12 months agoref #10271: Transfomer needs to be serializable
Katja Luther [Mon, 4 Sep 2023 08:40:30 +0000 (10:40 +0200)]
ref #10271: Transfomer needs to be serializable

12 months agoref #10133 add size state tree to ontology
Andreas Müller [Fri, 1 Sep 2023 20:27:17 +0000 (22:27 +0200)]
ref #10133 add size state tree to ontology

12 months agoref #10389: correct handling for quantitative data with several values
Katja Luther [Thu, 31 Aug 2023 14:27:25 +0000 (16:27 +0200)]
ref #10389: correct handling for quantitative data with several values

12 months agoref #10133 fix ontology uuids for fusion and width
Andreas Müller [Wed, 30 Aug 2023 16:18:18 +0000 (18:18 +0200)]
ref #10133 fix ontology uuids for fusion and width

12 months agofix #10385 add transliteration field to common names
Andreas Müller [Tue, 29 Aug 2023 14:20:13 +0000 (16:20 +0200)]
fix #10385 add transliteration field to common names

12 months agocleanup
Andreas Müller [Tue, 29 Aug 2023 11:35:08 +0000 (13:35 +0200)]
cleanup

12 months agofix failing tests because of BiNHum biocase provider, using herbar as
Katja Luther [Mon, 28 Aug 2023 08:10:04 +0000 (10:10 +0200)]
fix failing tests because of BiNHum biocase provider, using herbar as
provider

12 months agoref #10377: matching names including infrageneric epith. Tests
Belen Escobari [Wed, 23 Aug 2023 12:40:21 +0000 (14:40 +0200)]
ref  #10377: matching names including infrageneric epith. Tests

12 months agoadapt abbrevLabel of subgenus to subg.
Katja [Wed, 23 Aug 2023 10:10:48 +0000 (12:10 +0200)]
adapt abbrevLabel of subgenus to subg.

12 months agoref #10377: matching names including infrageneric epith
Belen Escobari [Mon, 21 Aug 2023 13:43:55 +0000 (15:43 +0200)]
ref  #10377: matching names including infrageneric epith

12 months agocleanup
Katja Luther [Wed, 16 Aug 2023 12:54:50 +0000 (14:54 +0200)]
cleanup

12 months agoadapt getSupportedStatesForFeature to the possibility to use a term tree
Katja Luther [Wed, 16 Aug 2023 12:54:09 +0000 (14:54 +0200)]
adapt getSupportedStatesForFeature to the possibility to use a term tree

12 months agoDebug not responding
Belen Escobari [Mon, 14 Aug 2023 12:03:02 +0000 (14:03 +0200)]
Debug not responding

12 months agoref #10377: adapt saveCharacterNodeDtoList to the possibility that
Katja Luther [Fri, 11 Aug 2023 14:06:58 +0000 (16:06 +0200)]
ref  #10377: adapt saveCharacterNodeDtoList to the possibility that
recommendedstates can come from trees or vocabularies

13 months agofix warning message for derived units without field units
Andreas Müller [Mon, 31 Jul 2023 10:50:37 +0000 (12:50 +0200)]
fix warning message for derived units without field units

13 months agocleanup
Andreas Müller [Mon, 24 Jul 2023 20:53:51 +0000 (22:53 +0200)]
cleanup

13 months agoref #10271 further data types for COL-DP and clean up COL-DB and CDM light
Andreas Müller [Fri, 21 Jul 2023 12:35:09 +0000 (14:35 +0200)]
ref #10271 further data types for COL-DP and clean up COL-DB and CDM light

13 months agoref #10271 add common base classes for CDM light and COL-DP export
Andreas Müller [Thu, 20 Jul 2023 14:04:15 +0000 (16:04 +0200)]
ref #10271 add common base classes for CDM light and COL-DP export

13 months agoref #10271 fix ClearDB datasets (cont. III)
Andreas Müller [Thu, 20 Jul 2023 12:28:47 +0000 (14:28 +0200)]
ref #10271 fix ClearDB datasets (cont. III)

13 months agoref #10271 fix ClearDB datasets (cont. II)
Andreas Müller [Thu, 20 Jul 2023 08:30:52 +0000 (10:30 +0200)]
ref #10271 fix ClearDB datasets (cont. II)