Andreas Müller [Fri, 9 Aug 2019 09:26:44 +0000 (11:26 +0200)]
ref #7099 move CdmPermissionClass to model
Andreas Müller [Fri, 9 Aug 2019 09:04:16 +0000 (11:04 +0200)]
ref #7099 move user, group and GrantedAuthorityImpl to new rights package
Andreas Müller [Fri, 9 Aug 2019 07:22:21 +0000 (09:22 +0200)]
ref #8454 add regex to User.username and Group.name
Andreas Müller [Thu, 8 Aug 2019 20:06:19 +0000 (22:06 +0200)]
adapt SchemaUpdater_55_58 to new version
Patrick Plitzner [Tue, 13 Aug 2019 07:13:29 +0000 (09:13 +0200)]
ref #7597 Fix deletion of aggregated descriptions
Patrick Plitzner [Tue, 13 Aug 2019 07:12:48 +0000 (09:12 +0200)]
cleanup
Patrick Plitzner [Tue, 13 Aug 2019 07:12:26 +0000 (09:12 +0200)]
ref #7597 Use UUID for service call
Patrick Plitzner [Mon, 12 Aug 2019 16:19:42 +0000 (18:19 +0200)]
ref #7597 Fix concurrent modification exception
Andreas Kohlbecker [Mon, 12 Aug 2019 14:18:02 +0000 (16:18 +0200)]
ref #8437 fixing LIE in DerivedUnitFacadeController
Patrick Plitzner [Mon, 12 Aug 2019 13:43:56 +0000 (15:43 +0200)]
ref #7597 Delete all aggregated descriptions when re-aggregating
Andreas Kohlbecker [Mon, 12 Aug 2019 09:39:20 +0000 (11:39 +0200)]
ref #8437 ITermTreeService termType Feature as filter includes also Character
Katja Luther [Mon, 12 Aug 2019 08:01:32 +0000 (10:01 +0200)]
setters of subtreeConfigurator should be void again, adapt tests
Katja Luther [Fri, 9 Aug 2019 10:29:30 +0000 (12:29 +0200)]
ref #8282: adapt save taxonnode to new doubtful attribute
Andreas Müller [Fri, 9 Aug 2019 10:11:18 +0000 (12:11 +0200)]
cleanup
Andreas Müller [Thu, 8 Aug 2019 20:08:28 +0000 (22:08 +0200)]
minor
Patrick Plitzner [Thu, 8 Aug 2019 13:23:14 +0000 (15:23 +0200)]
ref #7597 Add configuration to data set aggregation
- implement recursive aggregation
Andreas Müller [Thu, 8 Aug 2019 12:24:08 +0000 (14:24 +0200)]
cleanup
Andreas Müller [Thu, 8 Aug 2019 12:22:03 +0000 (14:22 +0200)]
fix #8446 Allow setPublish for subtree to filter for hybrids
Katja Luther [Thu, 8 Aug 2019 12:00:47 +0000 (14:00 +0200)]
ref #8385: add new preference predicates
Andreas Müller [Wed, 7 Aug 2019 13:07:04 +0000 (15:07 +0200)]
fix #7450 try to fix failing test when running in test suite
Andreas Müller [Wed, 7 Aug 2019 11:39:20 +0000 (13:39 +0200)]
fix #7450 allow setPublish for subtree to include misapplied names and pro parte synonyms
Andreas Kohlbecker [Wed, 7 Aug 2019 07:31:40 +0000 (09:31 +0200)]
fixing NPE in DerivedUnitFacadeCacheStrategy.getUnitNumber()
Andreas Müller [Tue, 6 Aug 2019 12:40:20 +0000 (14:40 +0200)]
cleanup
Andreas Müller [Tue, 6 Aug 2019 12:14:33 +0000 (14:14 +0200)]
cleanup and stream API for ForSubtreeConfigurator
Andreas Müller [Tue, 6 Aug 2019 12:13:18 +0000 (14:13 +0200)]
pretty print testSetSecundumForSubtree test data
Andreas Müller [Tue, 6 Aug 2019 10:53:27 +0000 (12:53 +0200)]
ref #7450 implement interfaces and signatures for setPublishForSubtree for misapplications and ppSyns (not yet implemented)
Andreas Müller [Tue, 6 Aug 2019 10:44:57 +0000 (12:44 +0200)]
minor
Patrick Plitzner [Tue, 6 Aug 2019 10:34:36 +0000 (12:34 +0200)]
ref #7597 Add progress monitor to aggregation service call
Katja Luther [Tue, 6 Aug 2019 09:19:15 +0000 (11:19 +0200)]
ref #8365: fix NPE in abcd tests
Katja Luther [Tue, 6 Aug 2019 08:02:56 +0000 (10:02 +0200)]
use configurator for setPublish flag
Andreas Müller [Mon, 5 Aug 2019 14:19:48 +0000 (16:19 +0200)]
ref #7450 revert the incorrect c&p from last commit
Andreas Müller [Mon, 5 Aug 2019 14:10:49 +0000 (16:10 +0200)]
ref #7450 use PublishForSubtreeConfigurator in TaxonNodeService
Andreas Müller [Mon, 5 Aug 2019 14:08:00 +0000 (16:08 +0200)]
cleanup
Andreas Müller [Fri, 2 Aug 2019 18:21:14 +0000 (20:21 +0200)]
ref #8429 add SchemaUpdater_58_581 and implement update script for setOfReferences renaming
Andreas Müller [Fri, 2 Aug 2019 18:20:22 +0000 (20:20 +0200)]
minor
Katja Luther [Mon, 5 Aug 2019 07:59:09 +0000 (09:59 +0200)]
Revert "minor - fix merge conflict"
This reverts commit
fc3932ac4dd186b6f5809863356912f949ae202d.
Katja Luther [Mon, 5 Aug 2019 07:51:30 +0000 (09:51 +0200)]
minor - fix merge conflict
Andreas Kohlbecker [Fri, 2 Aug 2019 15:47:24 +0000 (17:47 +0200)]
ref #8365 adding combination of collection code and unit number as specimenLabel to DerivedUnitFacade
Andreas Müller [Fri, 2 Aug 2019 14:42:18 +0000 (16:42 +0200)]
ref #8422 dependency handling finalized in PolytomousKeyGenerator
Andreas Müller [Thu, 1 Aug 2019 21:09:11 +0000 (23:09 +0200)]
minor
Andreas Müller [Thu, 1 Aug 2019 21:06:24 +0000 (23:06 +0200)]
ref #8422 add dependencies to PolytomousKeyGenerator
Andreas Müller [Thu, 1 Aug 2019 21:04:17 +0000 (23:04 +0200)]
ref #8422 fix reuse of feature if it shouldn't
Katja Luther [Fri, 2 Aug 2019 09:47:09 +0000 (11:47 +0200)]
ref #8385: fix TermOrder Enum
Andreas Kohlbecker [Fri, 2 Aug 2019 09:18:01 +0000 (11:18 +0200)]
fix #8436 termTree/* services with termType filter and featureTree/* services restricted to feature trees only
Andreas Kohlbecker [Fri, 2 Aug 2019 09:15:39 +0000 (11:15 +0200)]
ref #8437 using the listByRestriction method in favour of a new untested dao method & implementing page method in ITermTreeService
Andreas Müller [Thu, 1 Aug 2019 19:48:39 +0000 (21:48 +0200)]
ref #8422 fix leaf handling and simplify and complete tests
Andreas Müller [Thu, 1 Aug 2019 16:58:41 +0000 (18:58 +0200)]
ref #8422 handle single value branches better
Andreas Müller [Thu, 1 Aug 2019 13:58:29 +0000 (15:58 +0200)]
cleanup
Andreas Müller [Thu, 1 Aug 2019 13:57:41 +0000 (15:57 +0200)]
ref #8422 change sort order for multi-taxon or multi-state branches
Andreas Kohlbecker [Thu, 1 Aug 2019 16:01:01 +0000 (18:01 +0200)]
ref #8434 removing deprecated featureNode/* web service mapping as this was never used since one year
Andreas Müller [Thu, 1 Aug 2019 13:00:03 +0000 (15:00 +0200)]
ref #8422 some fixes for merging in PolytomousKeyGenerator
Andreas Müller [Thu, 1 Aug 2019 12:58:23 +0000 (14:58 +0200)]
ref #8437 first implementation for listBy termType for TermTreeService, not yet tested
Andreas Müller [Thu, 1 Aug 2019 12:55:30 +0000 (14:55 +0200)]
minor
Andreas Müller [Thu, 1 Aug 2019 12:53:35 +0000 (14:53 +0200)]
minor toString changes
Andreas Müller [Thu, 1 Aug 2019 09:14:15 +0000 (11:14 +0200)]
ref #8422 adding test for merge mode
Andreas Müller [Thu, 1 Aug 2019 09:13:27 +0000 (11:13 +0200)]
minor
Andreas Müller [Thu, 1 Aug 2019 07:33:38 +0000 (09:33 +0200)]
rename dependencies
Patrick Plitzner [Thu, 1 Aug 2019 10:17:06 +0000 (12:17 +0200)]
ref #7597 Adapt to service changes and rename long running method
Katja Luther [Thu, 1 Aug 2019 10:07:07 +0000 (12:07 +0200)]
fix typo
Katja Luther [Thu, 1 Aug 2019 09:58:09 +0000 (11:58 +0200)]
ref #8435: differ between info and debug level
Katja Luther [Wed, 31 Jul 2019 13:36:57 +0000 (15:36 +0200)]
ref #8431: adaptions to show the export name in progress monitor
Patrick Plitzner [Thu, 1 Aug 2019 08:01:18 +0000 (10:01 +0200)]
ref #7597 Aggregation for each taxon based on associated specimens
Andreas Müller [Thu, 1 Aug 2019 07:03:16 +0000 (09:03 +0200)]
minor
Andreas Müller [Thu, 1 Aug 2019 07:03:05 +0000 (09:03 +0200)]
ref #8422 fix scoring for categoricalData
Andreas Müller [Thu, 1 Aug 2019 07:02:13 +0000 (09:02 +0200)]
minor
Andreas Müller [Thu, 1 Aug 2019 07:01:05 +0000 (09:01 +0200)]
ref #8422 let PKGenerator only work on TaxonDescriptions for now
Andreas Kohlbecker [Thu, 1 Aug 2019 06:49:21 +0000 (08:49 +0200)]
ref #8434 turing FeatureTree contollers into TermTree controllers
Andreas Kohlbecker [Wed, 31 Jul 2019 12:14:54 +0000 (14:14 +0200)]
ref #8414 adding cycle detection to loadFieldUnitDTO()
Katja Luther [Wed, 31 Jul 2019 08:32:57 +0000 (10:32 +0200)]
fix #8299: add typification columns to scientific name table of cdm light
Andreas Müller [Tue, 30 Jul 2019 19:40:09 +0000 (21:40 +0200)]
ref #8422 PolytomousKeyGenerator: improving sort order and fixing score for quantitative data, + further refactoring
Andreas Müller [Tue, 30 Jul 2019 19:37:59 +0000 (21:37 +0200)]
fix #8426 fix IOOB Exception in RegistrationWorkingSet serialization
Andreas Müller [Tue, 30 Jul 2019 15:14:02 +0000 (17:14 +0200)]
ref #8422 refactoring PKGenerator+test and minor fixes
Andreas Kohlbecker [Tue, 30 Jul 2019 12:22:08 +0000 (14:22 +0200)]
ref #8414 renaming taxon/{uuid}/specimensOrObservationDTOs to taxon/{uuid}/fieldUnitDTOs
Andreas Kohlbecker [Tue, 30 Jul 2019 11:46:38 +0000 (13:46 +0200)]
ref #8390 uncommenting typeDesignationsInHomotypicalGroup service endpoints
Andreas Kohlbecker [Mon, 29 Jul 2019 12:05:54 +0000 (14:05 +0200)]
first implementation of /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
Andreas Kohlbecker [Tue, 30 Jul 2019 06:44:18 +0000 (08:44 +0200)]
ref #8414 refactoring OccurrenceController:
- method to load a single FieldUnitDTO
- adding all intermediate derivatives to the FieldUnitDTO
- renaming service endpoint mapping to fieldUnitDTO
- adding missing @Transactional annotations
- Factory method in abstract DerivateDTO to construct specific subtype DTOs
Patrick Plitzner [Mon, 29 Jul 2019 12:31:40 +0000 (14:31 +0200)]
Remove wildcard from generics
Andreas Kohlbecker [Mon, 29 Jul 2019 12:02:02 +0000 (14:02 +0200)]
ref #8406 cleaning up occurrence controller code
Andreas Müller [Fri, 26 Jul 2019 23:22:45 +0000 (01:22 +0200)]
fix PolytomousKeyGenerator (not yet ready)
Andreas Müller [Fri, 26 Jul 2019 23:22:06 +0000 (01:22 +0200)]
add some factory methods
Andreas Müller [Fri, 26 Jul 2019 23:21:36 +0000 (01:21 +0200)]
allow handle multiTaxon nodes in polytomousKey.print
Andreas Müller [Fri, 26 Jul 2019 23:20:24 +0000 (01:20 +0200)]
fix asList(Recursive) methods
Andreas Müller [Fri, 26 Jul 2019 23:19:05 +0000 (01:19 +0200)]
adapt DescriptiveDataSet to allow also descriptive systems with features not only characters
Andreas Müller [Fri, 26 Jul 2019 23:18:04 +0000 (01:18 +0200)]
cleanup
Andreas Müller [Fri, 26 Jul 2019 10:28:15 +0000 (12:28 +0200)]
add test to cdmlib-cache pom
Patrick Plitzner [Fri, 26 Jul 2019 09:06:30 +0000 (11:06 +0200)]
ref #8238 Allow adding term subtypes to TermRelationBases
Andreas Müller [Fri, 26 Jul 2019 07:28:30 +0000 (09:28 +0200)]
fix problem in CacheLoader
Patrick Plitzner [Fri, 26 Jul 2019 07:02:10 +0000 (09:02 +0200)]
Revert "Revert "update cached model for schema version 5.8""
This reverts commit
6fbe8628082d5f62797062febd0921d93708c275.
Patrick Plitzner [Fri, 26 Jul 2019 05:55:29 +0000 (07:55 +0200)]
Revert "update cached model for schema version 5.8"
This reverts commit
2be44701da8b296a6ac1008376bdda834b2ffd65.
Andreas Müller [Thu, 25 Jul 2019 23:55:39 +0000 (01:55 +0200)]
minor
Andreas Müller [Thu, 25 Jul 2019 23:46:09 +0000 (01:46 +0200)]
cleanup
Andreas Müller [Thu, 25 Jul 2019 23:28:04 +0000 (01:28 +0200)]
cleanup
Andreas Müller [Thu, 25 Jul 2019 23:05:07 +0000 (01:05 +0200)]
minor
Andreas Müller [Thu, 25 Jul 2019 23:00:40 +0000 (01:00 +0200)]
minor
Andreas Müller [Thu, 25 Jul 2019 22:56:21 +0000 (00:56 +0200)]
minor
Andreas Müller [Thu, 25 Jul 2019 22:46:13 +0000 (00:46 +0200)]
minor
Andreas Müller [Thu, 25 Jul 2019 22:29:20 +0000 (00:29 +0200)]
minor
Andreas Müller [Thu, 25 Jul 2019 22:11:41 +0000 (00:11 +0200)]
cleanup TermTree.clone
Andreas Müller [Thu, 25 Jul 2019 22:11:13 +0000 (00:11 +0200)]
cleanup, javadoc and test for notnull check for termtype in TermTree
Andreas Müller [Thu, 25 Jul 2019 14:20:40 +0000 (16:20 +0200)]
ref #6794 rename other TermTree.NewInstance methods and set old version to deprecated