Andreas Müller [Tue, 14 Feb 2012 16:19:14 +0000 (16:19 +0000)]
remove bracket factory methods (brackets should be part of the name)
Andreas Müller [Tue, 14 Feb 2012 16:18:28 +0000 (16:18 +0000)]
add brackets to infraGeneric epi part
Andreas Müller [Tue, 14 Feb 2012 15:52:49 +0000 (15:52 +0000)]
preliminary ignore failing (in suite) delete tests
Andreas Müller [Tue, 14 Feb 2012 15:25:26 +0000 (15:25 +0000)]
preliminary ignore failing (in suite) delete tests
Andreas Müller [Tue, 14 Feb 2012 14:32:47 +0000 (14:32 +0000)]
change logging levels for find zoologicalName
Andreas Müller [Tue, 14 Feb 2012 14:31:08 +0000 (14:31 +0000)]
move inferred synonyms to service layer
Andreas Müller [Tue, 14 Feb 2012 14:24:42 +0000 (14:24 +0000)]
move inferred synonyms to service layer
Andreas Müller [Tue, 14 Feb 2012 14:19:58 +0000 (14:19 +0000)]
move inferred synonyms to service layer
Andreas Müller [Tue, 14 Feb 2012 13:50:51 +0000 (13:50 +0000)]
Correct override for getTitleCache with html tag rule
Andreas Müller [Tue, 14 Feb 2012 13:48:07 +0000 (13:48 +0000)]
move override method in base class
Andreas Müller [Tue, 14 Feb 2012 13:44:37 +0000 (13:44 +0000)]
test again with override
Andreas Müller [Tue, 14 Feb 2012 13:24:58 +0000 (13:24 +0000)]
add html tagged title cache generation for NonViralNames
Andreas Müller [Tue, 14 Feb 2012 09:34:42 +0000 (09:34 +0000)]
minor
Andreas Müller [Tue, 14 Feb 2012 09:33:14 +0000 (09:33 +0000)]
minor refactoring of cache name cache strategies and create ZooNameNoMarkerCacheStrategy
Andreas Müller [Tue, 14 Feb 2012 08:57:29 +0000 (08:57 +0000)]
minor javadoc
Andreas Müller [Mon, 13 Feb 2012 21:35:34 +0000 (21:35 +0000)]
latest changes for PESI im/export
Andreas Müller [Fri, 10 Feb 2012 17:16:48 +0000 (17:16 +0000)]
include lang
Andreas Müller [Fri, 10 Feb 2012 15:10:03 +0000 (15:10 +0000)]
latest PESI export developments
Andreas Müller [Fri, 10 Feb 2012 12:04:44 +0000 (12:04 +0000)]
cleanup
Andreas Müller [Fri, 10 Feb 2012 12:00:14 +0000 (12:00 +0000)]
minor
Andreas Müller [Fri, 10 Feb 2012 11:57:36 +0000 (11:57 +0000)]
add language mapper and single source mapper
Andreas Müller [Thu, 9 Feb 2012 09:59:50 +0000 (09:59 +0000)]
added sp. nov. ined. and nom. & cons. ined. nomenclatural status
Andreas Müller [Tue, 7 Feb 2012 16:49:11 +0000 (16:49 +0000)]
Spell Sicily correctly (#2766)
Andreas Müller [Tue, 7 Feb 2012 15:24:30 +0000 (15:24 +0000)]
bugfix (?) for compile error
Andreas Müller [Tue, 7 Feb 2012 12:25:13 +0000 (12:25 +0000)]
Latest changes for PESI export and introduce transformers in export mappings
edit-jenkins [Mon, 6 Feb 2012 15:00:19 +0000 (15:00 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Mon, 6 Feb 2012 15:00:16 +0000 (15:00 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.9
Andreas Müller [Mon, 6 Feb 2012 11:53:01 +0000 (11:53 +0000)]
remove imports
Andreas Müller [Mon, 6 Feb 2012 11:49:15 +0000 (11:49 +0000)]
javadoc
Andreas Müller [Thu, 2 Feb 2012 23:10:21 +0000 (23:10 +0000)]
minor
Andreas Müller [Thu, 2 Feb 2012 22:53:58 +0000 (22:53 +0000)]
minor
Andreas Müller [Thu, 2 Feb 2012 22:42:48 +0000 (22:42 +0000)]
bugfix for stateData.modifyingText (#2760)
Andreas Müller [Thu, 2 Feb 2012 15:48:22 +0000 (15:48 +0000)]
remove imports
Andreas Müller [Thu, 2 Feb 2012 13:41:46 +0000 (13:41 +0000)]
bugfix for status duplication in name parser (#2750)
l.morris [Wed, 1 Feb 2012 15:51:27 +0000 (15:51 +0000)]
Exposes a bug in the NonViralNameParser: Multiple parsing of names with nomenclatural status will duplicate the status
Katja Luther [Wed, 1 Feb 2012 13:02:42 +0000 (13:02 +0000)]
fixing again the search for misapplied names. adapting the tests
Katja Luther [Wed, 1 Feb 2012 10:49:43 +0000 (10:49 +0000)]
test cases commented
Katja Luther [Tue, 31 Jan 2012 10:38:40 +0000 (10:38 +0000)]
Katja Luther [Tue, 31 Jan 2012 09:06:16 +0000 (09:06 +0000)]
Ticket #2648
Andreas Kohlbecker [Thu, 26 Jan 2012 14:48:47 +0000 (14:48 +0000)]
ignoring test
Andreas Kohlbecker [Thu, 26 Jan 2012 11:08:47 +0000 (11:08 +0000)]
test modified to reproduce bug in #2648 (search for misapplied names implemented)
Andreas Müller [Wed, 25 Jan 2012 16:21:14 +0000 (16:21 +0000)]
minor
Andreas Müller [Wed, 25 Jan 2012 15:46:29 +0000 (15:46 +0000)]
some small improvements for PESI export
Andreas Müller [Wed, 25 Jan 2012 14:25:59 +0000 (14:25 +0000)]
one more generic
Andreas Müller [Wed, 25 Jan 2012 14:22:31 +0000 (14:22 +0000)]
one more generic
Andreas Müller [Wed, 25 Jan 2012 14:11:14 +0000 (14:11 +0000)]
minor
Andreas Müller [Wed, 25 Jan 2012 14:05:51 +0000 (14:05 +0000)]
bugfix for taxon name id mapping in PESI
Andreas Müller [Tue, 24 Jan 2012 17:23:16 +0000 (17:23 +0000)]
better debugging for method mapper
Andreas Müller [Tue, 24 Jan 2012 16:13:55 +0000 (16:13 +0000)]
bugfix for MA workaround
Andreas Müller [Tue, 24 Jan 2012 14:56:17 +0000 (14:56 +0000)]
dirty workaround bugfix for #2743
Katja Luther [Tue, 24 Jan 2012 12:33:30 +0000 (12:33 +0000)]
Katja Luther [Mon, 23 Jan 2012 10:50:43 +0000 (10:50 +0000)]
add a test for a search only for misapplied names
Katja Luther [Mon, 23 Jan 2012 10:46:56 +0000 (10:46 +0000)]
fix for #2648
Andreas Kohlbecker [Thu, 19 Jan 2012 14:21:49 +0000 (14:21 +0000)]
circumventing persisting problems in test
Andreas Müller [Thu, 19 Jan 2012 14:17:26 +0000 (14:17 +0000)]
add switch species group
Andreas Müller [Thu, 19 Jan 2012 14:17:02 +0000 (14:17 +0000)]
add switch species group
Andreas Kohlbecker [Thu, 19 Jan 2012 14:04:56 +0000 (14:04 +0000)]
test to reproduce bug in #2648 (search for misapplied names implemented)
Andreas Kohlbecker [Thu, 19 Jan 2012 12:59:08 +0000 (12:59 +0000)]
fixing bug in bugfix for #2648, also fixing tests
Andreas Kohlbecker [Thu, 19 Jan 2012 12:04:41 +0000 (12:04 +0000)]
fixing bug in #2648: search for misapplied names implemented
Katja Luther [Thu, 19 Jan 2012 11:07:54 +0000 (11:07 +0000)]
bugfix (#2648)
Andreas Kohlbecker [Thu, 19 Jan 2012 10:22:02 +0000 (10:22 +0000)]
test to reproduce bug in misapplied name search
Andreas Müller [Wed, 18 Jan 2012 17:57:51 +0000 (17:57 +0000)]
remove whitespace
Andreas Müller [Wed, 18 Jan 2012 14:20:04 +0000 (14:20 +0000)]
handling blank strings as null
Andreas Müller [Wed, 18 Jan 2012 12:18:15 +0000 (12:18 +0000)]
minor
Andreas Müller [Wed, 18 Jan 2012 12:17:27 +0000 (12:17 +0000)]
minor logging improvements
Andreas Müller [Wed, 18 Jan 2012 10:02:22 +0000 (10:02 +0000)]
minor logging improvement
Andreas Müller [Mon, 16 Jan 2012 15:17:22 +0000 (15:17 +0000)]
minor (logging)
Andreas Müller [Mon, 16 Jan 2012 15:15:04 +0000 (15:15 +0000)]
minor (logging)
n.hoffmann [Mon, 16 Jan 2012 10:50:40 +0000 (10:50 +0000)]
Andreas Kohlbecker [Fri, 13 Jan 2012 16:31:39 +0000 (16:31 +0000)]
launch configs updated to new runjettyrun version
Andreas Kohlbecker [Fri, 13 Jan 2012 16:27:29 +0000 (16:27 +0000)]
documentation
Andreas Kohlbecker [Fri, 13 Jan 2012 15:05:35 +0000 (15:05 +0000)]
fixing bug associated with getTaxaByCommonName(); benchmarking taxa by common name hql vs lucene
Andreas Müller [Fri, 13 Jan 2012 10:35:48 +0000 (10:35 +0000)]
exclude updated_when from TaxonName
Andreas Müller [Fri, 13 Jan 2012 09:48:13 +0000 (09:48 +0000)]
Object change mapper for PESI and empty epithet bugfix and empty hybrid formula bugfix
Andreas Kohlbecker [Thu, 12 Jan 2012 17:09:10 +0000 (17:09 +0000)]
hibernate fulltext search & refactoring getTaxaByName*() method headers
Andreas Müller [Thu, 12 Jan 2012 12:13:38 +0000 (12:13 +0000)]
move DbExportMappers to common.mapping.out
Andreas Müller [Thu, 12 Jan 2012 12:04:29 +0000 (12:04 +0000)]
refactor export mapping
Katja Luther [Thu, 12 Jan 2012 11:17:22 +0000 (11:17 +0000)]
countTaxaByName harmonized with find method (replace Class <? extends TaxonBase> parameter with boolean parameters for synonyms, taxa and misapplied names)
Andreas Müller [Thu, 12 Jan 2012 09:47:41 +0000 (09:47 +0000)]
bugfix compile error in SOurce
Andreas Müller [Wed, 11 Jan 2012 17:32:14 +0000 (17:32 +0000)]
minor
Andreas Müller [Wed, 11 Jan 2012 16:57:22 +0000 (16:57 +0000)]
more generic for export io classes
Andreas Müller [Wed, 11 Jan 2012 16:20:36 +0000 (16:20 +0000)]
some library updates for PESI export
Andreas Müller [Wed, 11 Jan 2012 16:19:56 +0000 (16:19 +0000)]
return type for getTaggedText
Andreas Müller [Wed, 11 Jan 2012 16:19:30 +0000 (16:19 +0000)]
convenience methods to TaggedText and TagEnum
Andreas Müller [Wed, 11 Jan 2012 14:53:51 +0000 (14:53 +0000)]
toString for TaggedText
Katja Luther [Wed, 11 Jan 2012 10:50:00 +0000 (10:50 +0000)]
changes for bugs and problems in search for misapplied names (#2648)
Andreas Müller [Wed, 11 Jan 2012 09:39:30 +0000 (09:39 +0000)]
use io application controler
Andreas Müller [Tue, 10 Jan 2012 14:06:24 +0000 (14:06 +0000)]
minor
Andreas Müller [Tue, 10 Jan 2012 13:36:37 +0000 (13:36 +0000)]
better logging for occurrences missing source number
l.morris [Tue, 10 Jan 2012 10:06:52 +0000 (10:06 +0000)]
Added MODIFIABLE to MarkerType and MarkerType.csv
Andreas Müller [Mon, 9 Jan 2012 17:38:55 +0000 (17:38 +0000)]
update erms import (e.g. lsid mapper)
Andreas Müller [Mon, 9 Jan 2012 17:37:21 +0000 (17:37 +0000)]
bugfix for ordered term import
Andreas Müller [Mon, 9 Jan 2012 12:22:22 +0000 (12:22 +0000)]
latest version of delete result
Andreas Müller [Mon, 9 Jan 2012 12:22:00 +0000 (12:22 +0000)]
base class for delete configurator
Andreas Müller [Mon, 9 Jan 2012 12:21:26 +0000 (12:21 +0000)]
new term delete implementation
Andreas Müller [Fri, 6 Jan 2012 16:33:07 +0000 (16:33 +0000)]
minor
Andreas Müller [Fri, 6 Jan 2012 16:32:43 +0000 (16:32 +0000)]
handling missing id case for object creation mapper
Andreas Müller [Fri, 6 Jan 2012 14:28:14 +0000 (14:28 +0000)]
improve error handling for SQException
Andreas Müller [Fri, 6 Jan 2012 14:27:25 +0000 (14:27 +0000)]
improve error handling in for no such method exception
Andreas Müller [Fri, 6 Jan 2012 14:26:27 +0000 (14:26 +0000)]
improve logging for errors in mapper (not yet finished)