Andreas Müller [Wed, 3 Apr 2024 18:33:45 +0000 (20:33 +0200)]
ref #10178 extract adapter methods into own class
Andreas Müller [Wed, 3 Apr 2024 17:32:41 +0000 (19:32 +0200)]
ref #10178 fix jsonConfigurations, introduce api data objects with adapter and cleanup
Andreas Müller [Wed, 3 Apr 2024 15:27:21 +0000 (17:27 +0200)]
ref #10178 fix IOOB in replaceGenderEnding
Andreas Müller [Wed, 3 Apr 2024 15:26:23 +0000 (17:26 +0200)]
cleanup
Andreas Müller [Wed, 3 Apr 2024 14:51:16 +0000 (16:51 +0200)]
cleanup
Andreas Müller [Wed, 3 Apr 2024 14:50:26 +0000 (16:50 +0200)]
ref #10322 try to handle omitLevels same as fallbackAreaMarkerTypes
Andreas Müller [Wed, 3 Apr 2024 11:02:37 +0000 (13:02 +0200)]
ref #10178 fix equals for genusOrUninomialWithDistance
Andreas Müller [Wed, 3 Apr 2024 10:37:08 +0000 (12:37 +0200)]
ref #10178 remove inline call for taxonNamePartsFromDb
Andreas Müller [Wed, 3 Apr 2024 10:35:34 +0000 (12:35 +0200)]
ref #10178 adapt nameMatching controller path and request param
Andreas Müller [Wed, 3 Apr 2024 10:33:41 +0000 (12:33 +0200)]
cleanup
Andreas Müller [Tue, 2 Apr 2024 17:27:36 +0000 (19:27 +0200)]
ref #10322 make DistributionDtoLoader load annotations and use generic loading for sources
Andreas Müller [Tue, 2 Apr 2024 15:36:08 +0000 (17:36 +0200)]
ref #10322 handle features with subfeatures correctly
Andreas Müller [Thu, 28 Mar 2024 21:58:10 +0000 (22:58 +0100)]
ref #461, ref 10322, ref #7695 do not handle >1 typified names as error in typeDesignationSetContainer
Andreas Müller [Thu, 28 Mar 2024 21:55:19 +0000 (22:55 +0100)]
cleanup
Andreas Müller [Thu, 28 Mar 2024 11:31:06 +0000 (12:31 +0100)]
ref #10273 adapt WfoContentExportTransformer
Andreas Müller [Mon, 25 Mar 2024 21:33:38 +0000 (22:33 +0100)]
ref #10488 add unique citation string and long citation to cdmlight
Andreas Müller [Mon, 25 Mar 2024 15:14:58 +0000 (16:14 +0100)]
ref #10487 rename nameUseInSource to original spelling in CDM light name table
Andreas Müller [Fri, 22 Mar 2024 17:49:15 +0000 (18:49 +0100)]
cleanup
Andreas Müller [Fri, 22 Mar 2024 17:48:26 +0000 (18:48 +0100)]
ref #10322, ref #9524, ref #4911 fix omit level handling in computed area trees (cont.)
Andreas Müller [Fri, 22 Mar 2024 16:59:10 +0000 (17:59 +0100)]
ref #10322, ref #9524, ref #4911 fix omit level handling in computed area trees
Andreas Müller [Fri, 22 Mar 2024 11:43:39 +0000 (12:43 +0100)]
ref #10322, ref #9524, ref #4911 fix source loading for distribution tree
Andreas Müller [Fri, 22 Mar 2024 11:43:00 +0000 (12:43 +0100)]
cleanup
Andreas Müller [Fri, 22 Mar 2024 08:59:00 +0000 (09:59 +0100)]
ref #10322, ref #9524, ref #4911 add switch to allow loading the old way until new is ready
Andreas Müller [Fri, 22 Mar 2024 08:01:47 +0000 (09:01 +0100)]
ref #10322, ref #9524, ref #4911 fix distributionInfoConfig handling in distribution service
Andreas Müller [Fri, 22 Mar 2024 07:07:42 +0000 (08:07 +0100)]
cleanup
Andreas Müller [Fri, 22 Mar 2024 05:30:13 +0000 (06:30 +0100)]
ref #9524 fix compile errors
Andreas Müller [Thu, 21 Mar 2024 22:04:32 +0000 (23:04 +0100)]
ref #9524 improve non-dto object loading
Andreas Müller [Thu, 21 Mar 2024 21:45:42 +0000 (22:45 +0100)]
rename TaggedCacheHelper ->TaggedTextFormatter (cont.)
Andreas Müller [Thu, 21 Mar 2024 21:45:12 +0000 (22:45 +0100)]
ref #10322 move source type filter to base class (in develop)
Andreas Müller [Thu, 21 Mar 2024 21:44:08 +0000 (22:44 +0100)]
ref #10273 add description types (cont.)
Andreas Müller [Thu, 21 Mar 2024 21:09:01 +0000 (22:09 +0100)]
rename TaggedCacheHelper ->TaggedTextFormatter
Andreas Müller [Fri, 1 Mar 2024 15:31:44 +0000 (16:31 +0100)]
ref #10322 move source type filter to base class
Andreas Müller [Thu, 21 Mar 2024 19:43:53 +0000 (20:43 +0100)]
ref #10273 add description types
Andreas Müller [Thu, 21 Mar 2024 19:43:08 +0000 (20:43 +0100)]
cleanup
Andreas Müller [Thu, 21 Mar 2024 15:02:59 +0000 (16:02 +0100)]
ref #10322 filter sources by type (primary sources only)
Andreas Müller [Thu, 21 Mar 2024 11:49:23 +0000 (12:49 +0100)]
ref #10273 add missing establishmentMeans column label
Belen Escobari [Thu, 21 Mar 2024 08:33:15 +0000 (09:33 +0100)]
ref #10178 namematching Controller
Andreas Müller [Wed, 20 Mar 2024 22:08:49 +0000 (23:08 +0100)]
ref #10273 add base classes for WFO exports
Andreas Müller [Wed, 20 Mar 2024 21:41:52 +0000 (22:41 +0100)]
ref #10273 some first steps for the WFO content export
Andreas Müller [Wed, 20 Mar 2024 07:38:15 +0000 (08:38 +0100)]
ref #7771 always use defined order for names that are the same in the name- or titlecache (e.g. MAN) (cont. by adding authorshipCache as criteria)
Andreas Müller [Tue, 19 Mar 2024 22:30:13 +0000 (23:30 +0100)]
ref #7771 always use defined order for names that are the same in the name- or titlecache (e.g. MAN) (cont. by adding also taxon uuid as criteria)
Andreas Müller [Tue, 19 Mar 2024 22:28:27 +0000 (23:28 +0100)]
ref #7771 always use defined order for names that are the same in the name- or titlecache (e.g. MAN)
Andreas Müller [Tue, 19 Mar 2024 22:25:07 +0000 (23:25 +0100)]
cleanup
Andreas Müller [Tue, 19 Mar 2024 22:05:42 +0000 (23:05 +0100)]
minor
Katja [Thu, 14 Mar 2024 11:53:03 +0000 (12:53 +0100)]
Revert "ref #7771: test adaption"
This reverts commit
9264d508afc6823675e7e541b3898ac9b795d9e0.
Katja [Thu, 14 Mar 2024 11:51:38 +0000 (12:51 +0100)]
Revert "ref #7771: use representation of taxon rel type for display"
This reverts commit
89f511ab0ea7e38a282e9ff60f5e4ec0e460d40e.
Katja [Thu, 14 Mar 2024 11:37:42 +0000 (12:37 +0100)]
ref #7771: test adaption
Katja [Thu, 14 Mar 2024 11:24:41 +0000 (12:24 +0100)]
ref #7771: use representation of taxon rel type for display
Katja [Thu, 7 Mar 2024 08:18:38 +0000 (09:18 +0100)]
set the test to ignore again
Katja [Wed, 6 Mar 2024 13:38:45 +0000 (14:38 +0100)]
ref #7771: adapt TaxonRelationshipFormatter
Belen Escobari [Mon, 4 Mar 2024 15:29:24 +0000 (16:29 +0100)]
ref #10178 exact matches score corrected
Belen Escobari [Mon, 4 Mar 2024 15:04:51 +0000 (16:04 +0100)]
ref #10178 list of names as input
Andreas Müller [Thu, 29 Feb 2024 08:23:43 +0000 (09:23 +0100)]
cleanup
Katja [Thu, 29 Feb 2024 10:11:29 +0000 (11:11 +0100)]
use StringResultDto for ws result
Andreas Müller [Thu, 29 Feb 2024 08:19:45 +0000 (09:19 +0100)]
ref #10322 add parameterless hql-result method to genericDao
Andreas Müller [Thu, 29 Feb 2024 08:15:20 +0000 (09:15 +0100)]
cleanup
Katja [Wed, 28 Feb 2024 14:01:52 +0000 (15:01 +0100)]
ref #10322: add countMethod to polytomouskey controller
Andreas Müller [Wed, 28 Feb 2024 11:32:41 +0000 (12:32 +0100)]
ref #10322 fix data loading for test
Andreas Müller [Wed, 28 Feb 2024 10:51:52 +0000 (11:51 +0100)]
ref #10322 add first test for PortalDtoLoader
Andreas Müller [Wed, 28 Feb 2024 10:34:50 +0000 (11:34 +0100)]
ref #10322, #10474 add OccurrenceInfoDto
Andreas Müller [Wed, 28 Feb 2024 10:29:02 +0000 (11:29 +0100)]
ref #10322 implement withXXX in PortalDtoLoader
Andreas Müller [Wed, 28 Feb 2024 09:00:17 +0000 (10:00 +0100)]
ref #10471 split code for better debugging of NPE
Katja [Wed, 28 Feb 2024 08:59:19 +0000 (09:59 +0100)]
fix NPE in association check
Andreas Müller [Wed, 28 Feb 2024 08:42:23 +0000 (09:42 +0100)]
cleanup
Andreas Müller [Wed, 28 Feb 2024 08:09:04 +0000 (09:09 +0100)]
fix potential NPE in TaxonNodeDto
Andreas Müller [Tue, 27 Feb 2024 08:37:10 +0000 (09:37 +0100)]
cleanup
Belen Escobari [Mon, 26 Feb 2024 14:37:44 +0000 (15:37 +0100)]
Check dao null exception
Andreas Müller [Mon, 26 Feb 2024 10:04:33 +0000 (11:04 +0100)]
ref #10472 fix remote findDto method
Andreas Müller [Mon, 26 Feb 2024 08:35:25 +0000 (09:35 +0100)]
ref #10472 add taxonFindDto search
Andreas Müller [Fri, 23 Feb 2024 17:34:45 +0000 (18:34 +0100)]
ref #461, ref #9940, ref #9941 allow preceding type status label (and set as default)
Katja [Fri, 23 Feb 2024 16:05:52 +0000 (17:05 +0100)]
revert model changes
Andreas Müller [Fri, 23 Feb 2024 15:54:41 +0000 (16:54 +0100)]
replace by DASH_W (cont.)
Andreas Müller [Fri, 23 Feb 2024 15:52:02 +0000 (16:52 +0100)]
replace by DASH_W
Andreas Müller [Fri, 23 Feb 2024 15:45:39 +0000 (16:45 +0100)]
ref #461, ref #9940, ref #9941 add precedingMainType and accessionNoType params to type designation formatter
Andreas Müller [Fri, 23 Feb 2024 15:37:41 +0000 (16:37 +0100)]
cleanup
Andreas Müller [Fri, 23 Feb 2024 13:14:33 +0000 (14:14 +0100)]
ref #7045 fix test/incorrect object loading introduced for readonly test
Andreas Müller [Fri, 23 Feb 2024 12:18:45 +0000 (13:18 +0100)]
ref #7045 use real DTOs for loading childNodesOf
Andreas Müller [Fri, 23 Feb 2024 12:15:58 +0000 (13:15 +0100)]
cleanup
Andreas Müller [Fri, 23 Feb 2024 12:12:23 +0000 (13:12 +0100)]
used defined uuid1
Andreas Müller [Fri, 23 Feb 2024 10:18:40 +0000 (11:18 +0100)]
remove unused property path
Andreas Müller [Fri, 23 Feb 2024 10:13:37 +0000 (11:13 +0100)]
#7045 move createNodeDtos to result class
Katja [Fri, 23 Feb 2024 10:58:07 +0000 (11:58 +0100)]
ref #10472: add Methods to get accTaxonUuid and nom citation
Andreas Müller [Wed, 21 Feb 2024 09:55:42 +0000 (10:55 +0100)]
ref #10322, ref #10474 order derivates on short label
Andreas Müller [Wed, 21 Feb 2024 07:54:55 +0000 (08:54 +0100)]
extract SpecimenOrObservationBaseComparator
Andreas Müller [Wed, 21 Feb 2024 07:48:34 +0000 (08:48 +0100)]
update javadoc for SpecimenTypeDesignationStatus
Andreas Müller [Wed, 21 Feb 2024 07:30:28 +0000 (08:30 +0100)]
ref #10322, ref #10474 make SpecimenOrObservationBaseDTO.derivatives ordered
Andreas Müller [Mon, 19 Feb 2024 21:15:29 +0000 (22:15 +0100)]
cleanup
Andreas Müller [Mon, 19 Feb 2024 12:35:06 +0000 (13:35 +0100)]
remove unused getTaxaByName method from taxonDao
Andreas Müller [Mon, 19 Feb 2024 12:34:27 +0000 (13:34 +0100)]
some javadoc
Andreas Müller [Mon, 19 Feb 2024 12:33:32 +0000 (13:33 +0100)]
ref #10322, ref #10474 remove not fully implemented specimen implementation from DTO for now
Andreas Müller [Sat, 17 Feb 2024 08:58:13 +0000 (09:58 +0100)]
ref #10322, ref #10474 use timePeriod instead of gatheringStartDate in all occurrence context
Andreas Müller [Sat, 17 Feb 2024 07:34:41 +0000 (08:34 +0100)]
ref #10322, ref #10474 fix recordBase handling (cont.)
Andreas Müller [Sat, 17 Feb 2024 06:57:23 +0000 (07:57 +0100)]
ref #10322, ref #10474 fix recordBase handling
Andreas Müller [Sat, 17 Feb 2024 00:27:36 +0000 (01:27 +0100)]
ref #10322, ref #10474 handle contigFile
Andreas Müller [Fri, 16 Feb 2024 23:45:12 +0000 (00:45 +0100)]
ref #10322, ref #10474 add DnaQualityDTO
Andreas Müller [Fri, 16 Feb 2024 22:45:13 +0000 (23:45 +0100)]
ref #10322, ref #10474 add addAmplificationResultDTO, SingleReadDTO and PrimerDTO
Andreas Müller [Fri, 16 Feb 2024 20:37:11 +0000 (21:37 +0100)]
ref #10322, ref #10474 cleanup fieldunit and improve data handling and comparison (cont.)
Andreas Müller [Fri, 16 Feb 2024 20:18:34 +0000 (21:18 +0100)]
ref #10322, ref #10474 cleanup fieldunit and improve data handling and comparison
Andreas Müller [Fri, 16 Feb 2024 19:32:35 +0000 (20:32 +0100)]
cleanup
Andreas Müller [Fri, 16 Feb 2024 17:46:30 +0000 (18:46 +0100)]
ref #10322, ref #10472 further remove model objects, use DerivationEvent and some cleanup