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Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment...
[cdmlib.git]
/
cdmlib-io
/
src
/
2015-05-06
Andreas M��ller
Adding firstSeqPosition, leftCutPosition and rightCutPo...
tree
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commitdiff
2015-04-14
Andreas Müller
merge trunk into 36 branch
tree
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commitdiff
2015-04-13
Andreas Müller
Add hasMoreMembers to Team, update script still missing...
tree
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commitdiff
2015-04-13
Patric Plitzner
- reverted temporary changes for titleCache generation
tree
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commitdiff
2015-04-13
Katja Luther
(no commit message)
tree
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commitdiff
2015-04-09
Patric Plitzner
- temporarily disabled test
tree
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commitdiff
2015-03-20
Andreas Müller
fix test environment for Identifier being Annotatable...
tree
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commitdiff
2015-03-20
Andreas Müller
fixing persistence tests on AgentBase.collectorTitle...
tree
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commitdiff
2015-03-20
Andreas Müller
add collectorTitle and protectedCollectorTitleCache...
tree
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commitdiff
2015-03-19
Andreas Müller
merge validation2 and model 3.5 into trunk
tree
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commitdiff
2015-03-18
Patric Plitzner
- added option to cancel import
tree
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commitdiff
2015-03-17
Patric Plitzner
- avoid duplicate taxon nodes in default classification
tree
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commitdiff
2015-03-17
Patric Plitzner
- added test file
tree
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commitdiff
2015-03-17
Patric Plitzner
- refactored code
tree
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commitdiff
2015-03-17
Patric Plitzner
- enhanced progress monitor
tree
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commitdiff
2015-03-17
Patric Plitzner
- enhanced progress monitor
tree
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commitdiff
2015-03-17
Patric Plitzner
- fixed potential NPE
tree
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commitdiff
2015-03-17
Patric Plitzner
- fixed taxon node matching for default classification
tree
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commitdiff
2015-03-17
Patric Plitzner
- added new test cases (still temporarily @Ignore)
tree
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commitdiff
2015-03-17
Patric Plitzner
- fixed potential NPE
tree
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commitdiff
2015-03-16
Patric Plitzner
- fixed potential NPE when adding taxon nodes for...
tree
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commitdiff
2015-03-16
Patric Plitzner
- some code speed up
tree
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commitdiff
2015-03-16
Patric Plitzner
- fixed adding to default classification
tree
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commitdiff
2015-03-16
Patric Plitzner
- temporarily added test to ignore
tree
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commitdiff
2015-03-16
Patric Plitzner
- implemented new config option "Move new taxa to...
tree
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commitdiff
2015-03-16
Patric Plitzner
- added new config option "Move new taxa to default...
tree
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commitdiff
2015-03-16
Patric Plitzner
- enhanced report
tree
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commitdiff
2015-03-16
Patric Plitzner
- enhanced ggbn parsing
tree
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commitdiff
2015-03-12
Patric Plitzner
- added test to ignore temporarily
tree
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commitdiff
2015-03-12
Patric Plitzner
- added test to ignore temporarily
tree
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commitdiff
2015-03-12
Patric Plitzner
- fixed rank parsing
tree
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commitdiff
2015-03-12
Andreas Müller
last updates to eFlora import
tree
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commitdiff
2015-03-12
Patric Plitzner
- temp changes for name matching
tree
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commitdiff
2015-03-11
Patric Plitzner
- some name matching enhancements
tree
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commitdiff
2015-03-11
Patric Plitzner
- added info messages to report
tree
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commitdiff
2015-03-10
Andreas Müller
latest updates to FotG import
tree
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commitdiff
2015-03-10
Andreas Müller
update to Markup import
tree
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commitdiff
2015-03-10
Katja Luther
(no commit message)
tree
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commitdiff
2015-03-05
Patric Plitzner
- fixed name matching when ignoring authorship
tree
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commitdiff
2015-03-04
Patric Plitzner
- fixed getTaxonForName()
tree
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commitdiff
2015-03-04
Patric Plitzner
- added removeCountryFromLocalityText option to config...
tree
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commitdiff
2015-03-04
Patric Plitzner
- shortened regex
tree
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commitdiff
2015-03-04
Patric Plitzner
- fixed temporary geolocation hack
tree
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commitdiff
2015-03-04
Patric Plitzner
- fixed name matching when ignoring author
tree
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commitdiff
2015-03-04
Patric Plitzner
- re-added temporary hack
tree
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commitdiff
2015-03-04
Patric Plitzner
- removed temporary hack
tree
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commitdiff
2015-03-04
Patric Plitzner
- fixed mapUnitIdToBarcode
tree
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commitdiff
2015-03-04
Patric Plitzner
- added config option to choose mapping of ABCD UnitID
tree
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commitdiff
2015-03-03
Patric Plitzner
- added ignoreAuthorship flag to ABCD import
tree
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commitdiff
2015-03-03
Patric Plitzner
- reset all relevant dataholder fields for every unit
tree
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commitdiff
2015-03-02
Andreas Müller
latest changes for Markup import
tree
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commitdiff
2015-03-02
Andreas Müller
latest changes for Markup import
tree
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commitdiff
2015-02-25
Andreas Müller
add some doubtful taxon relationships tom BM transformer
tree
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commitdiff
2015-02-12
Andreas Müller
minor
tree
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commitdiff
2015-02-12
Andreas Müller
latest changes to Markup import
tree
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commitdiff
2015-02-02
Alexander Oppermann
extended controller to enable feature export
tree
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commitdiff
2015-01-27
Patric Plitzner
- error handling for report file
tree
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commitdiff
2015-01-23
Patric Plitzner
- added @Ignore to failing test -_-
tree
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commitdiff
2015-01-23
Patric Plitzner
- added ABCD import test for subspecies
tree
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commitdiff
2015-01-23
Patric Plitzner
- fixed potential NPE
tree
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commitdiff
2015-01-23
Patric Plitzner
- added option to specify a URI for the import report...
tree
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commitdiff
2015-01-23
Patric Plitzner
- add taxon name instead of taxon for determination
tree
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commitdiff
2015-01-22
Patric Plitzner
- added two methods to find/create names and taxa
tree
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commitdiff
2015-01-22
Patric Plitzner
- added "else if" to avoid unnecessary checking
tree
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commitdiff
2015-01-22
Patric Plitzner
- increased code readability
tree
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commitdiff
2015-01-21
Patric Plitzner
- added parameter for each deduplication (references...
tree
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commitdiff
2015-01-21
Patric Plitzner
- added ABCD import paramater "skipDeduplication"
tree
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commitdiff
2015-01-21
Patric Plitzner
- avoid duplicating the default "ABCD classic" referen...
tree
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commitdiff
2015-01-16
Patric Plitzner
- added gathering date and elevation to ABCD import
tree
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commitdiff
2015-01-16
Patric Plitzner
- use classification uuid to load classification if...
tree
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commitdiff
2015-01-16
Patric Plitzner
- cleaned up code
tree
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commitdiff
2015-01-08
Andreas Müller
merge cdmlib-io from validation branch to trunk
tree
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commitdiff
2014-12-16
Andreas Müller
add xslx test in io
tree
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commitdiff
2014-12-16
Andreas Müller
minor
tree
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commitdiff
2014-12-12
Andreas Müller
add poi-ooxml and upgrade to 3.10-FINAL
tree
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commitdiff
2014-12-11
Patric Plitzner
- change visibility of createTestDataSet to public
tree
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commitdiff
2014-12-10
Andreas Müller
merge 3.4.1 into trunk
tree
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commitdiff
2014-12-10
Patric Plitzner
merge-update from trunk
tree
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commitdiff
2014-12-10
Patric Plitzner
merge-update from trunk
tree
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commitdiff
2014-12-10
Patric Plitzner
- added abstract method createTestData() to CdmIntegra...
tree
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commitdiff
2014-12-09
Andreas Müller
some bugfixes to new Amplification modelling #4541
tree
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commitdiff
2014-12-09
Patric Plitzner
merge-update from trunk
tree
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commitdiff
2014-12-09
Andreas Müller
separate Amplification and AmplificationResult.java...
tree
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commitdiff
2014-12-04
Andreas Müller
use saveOrUpdate in JaxbImport
tree
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commitdiff
2014-12-03
Andreas Müller
fixing test for SingleReadAlignment and removal of...
tree
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commitdiff
2014-12-03
Patric Plitzner
merge-update from trunk
tree
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commitdiff
2014-12-03
Andreas Müller
merge PresenceTerm and AbsenceTerm #4521
tree
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commitdiff
2014-11-21
Andreas Müller
Add institution to DerivationEvent and Amplification
tree
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commitdiff
2014-11-21
Andreas Müller
add DnaMarker to Primer #4470
tree
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commitdiff
2014-11-21
Andreas Müller
add DNA Quality Type vocabulary
tree
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commitdiff
2014-11-14
Alexander Oppermann
made changes to be compliant with TaxonomicEditor Export
tree
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commitdiff
2014-10-28
Patric Plitzner
- extended init test
tree
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commitdiff
2014-10-27
Katja Luther
(no commit message)
tree
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commitdiff
2014-10-27
Katja Luther
(no commit message)
tree
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commitdiff
2014-10-21
Andreas Müller
merge cdmlib-3.4 branch into trunk
tree
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commitdiff
2014-10-21
Andreas Müller
integrate latest changes to branche 3.4
tree
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commitdiff
2014-10-21
Patric Plitzner
merge-update from trunk
tree
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commitdiff
2014-10-21
Patric Plitzner
merge-update from trunk
tree
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commitdiff
2014-10-21
Patric Plitzner
merge-update from trunk
tree
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commitdiff
2014-10-20
Andreas Müller
further changes to DnaQuality #4434 and update scrip...
tree
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commitdiff
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