X-Git-Url: https://dev.e-taxonomy.eu/gitweb/cdmlib.git/blobdiff_plain/bb7cf1c5559896c0ab131e63415e0455245f610f..2e032176b9d210a6d313b218be9f0f8ba329143d:/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SingleReadAlignment.java

diff --git a/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SingleReadAlignment.java b/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SingleReadAlignment.java
index 546e2bf03a..4bee6d613e 100644
--- a/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SingleReadAlignment.java
+++ b/cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SingleReadAlignment.java
@@ -3,10 +3,12 @@
  */
 package eu.etaxonomy.cdm.model.molecular;
 
+import java.io.Serializable;
+
 import javax.persistence.Entity;
 import javax.persistence.FetchType;
 import javax.persistence.Lob;
-import javax.persistence.ManyToOne;
+import javax.persistence.OneToOne;
 import javax.xml.bind.annotation.XmlAccessType;
 import javax.xml.bind.annotation.XmlAccessorType;
 import javax.xml.bind.annotation.XmlElement;
@@ -39,14 +41,14 @@ import eu.etaxonomy.cdm.model.common.VersionableEntity;
 @XmlRootElement(name = "SingleReadAlignment")
 @Entity
 @Audited
-public class SingleReadAlignment extends VersionableEntity {
+public class SingleReadAlignment extends VersionableEntity implements Serializable {
 	private static final long serialVersionUID = 6141518347067279304L;
 
 	/** @see #getDnaMarker() */
 	@XmlElement(name = "ConsensusAlignment")
     @XmlIDREF
     @XmlSchemaType(name = "IDREF")
-    @ManyToOne(fetch = FetchType.LAZY)
+    @OneToOne(fetch = FetchType.LAZY)
 	//for now we do not cascade but expect the user to save the sequence manually
 	private Sequence consensusAlignment;
 
@@ -54,7 +56,7 @@ public class SingleReadAlignment extends VersionableEntity {
 	@XmlElement(name = "SingleRead")
     @XmlIDREF
     @XmlSchemaType(name = "IDREF")
-    @ManyToOne(fetch = FetchType.LAZY)
+    @OneToOne(fetch = FetchType.LAZY)
 	@Cascade({CascadeType.SAVE_UPDATE, CascadeType.MERGE})
 	private SingleRead singleRead;
 
@@ -76,7 +78,7 @@ public class SingleReadAlignment extends VersionableEntity {
     private boolean reverseComplement;
 
 
-	public static class Shift implements Cloneable{
+	public static class Shift implements Cloneable, Serializable {
 		public int position;
 		public int shift;
 
@@ -180,11 +182,10 @@ public class SingleReadAlignment extends VersionableEntity {
 
 // ******************* CLONE *********************/
 
-
-
 	@Override
-	public Object clone() throws CloneNotSupportedException {
-		SingleReadAlignment result = (SingleReadAlignment)super.clone();
+	public SingleReadAlignment clone() throws CloneNotSupportedException {
+
+	    SingleReadAlignment result = (SingleReadAlignment)super.clone();
 
 		//deep copy shifts
 		Shift[] oldShifts = this.getShifts();