X-Git-Url: https://dev.e-taxonomy.eu/gitweb/cdmlib.git/blobdiff_plain/a13c5f660e612247367698f15186260a25a10650..134b76942e9a8d2a934d4c667e8d888ab43c7237:/pom.xml

diff --git a/pom.xml b/pom.xml
index 162ead6d56..c874e2854a 100755
--- a/pom.xml
+++ b/pom.xml
@@ -3,7 +3,7 @@
     <modelVersion>4.0.0</modelVersion>
     <groupId>eu.etaxonomy</groupId>
     <artifactId>cdmlib-parent</artifactId>
-	<version>3.1.4-SNAPSHOT</version>
+	<version>3.3.0-SNAPSHOT</version>
     <name>CDM Library</name>
     <description>The Java implementation of the Common Data Model (CDM), the data model for EDIT's internet platform for cybertaxonomy.</description>
     <url>http://wp5.e-taxonomy.eu/cdmlib/</url>
@@ -22,18 +22,15 @@
     </modules>
     <properties>
 		<java.codelevel>1.6</java.codelevel>
-        <spring.version>3.2.1.RELEASE</spring.version>
-        <spring-security.version>3.0.7.RELEASE</spring-security.version>
-		<hibernate.version>4.1.9.Final</hibernate.version>
-<!--         <hibernate.version>3.4.0-SNAPSHOT</hibernate.version> -->
+        <spring.version>3.2.2.RELEASE</spring.version>
+        <spring-security.version>3.1.3.RELEASE</spring-security.version>
+		<hibernate.version>4.1.10.Final</hibernate.version>
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
         <unitils.version>3.3</unitils.version>
-        <!-- OLD: <lucene.version>2.9.4</lucene.version> --><!-- lucene.version in hibernate-search 3.4.0-SNAPSHOT is 2.4.0-->
-        <lucene.version>3.6.2</lucene.version><!-- lucene.version in hibernate-search 3.4.0-SNAPSHOT is 2.4.0-->
-        
-        
+        <lucene.version>3.6.2</lucene.version>
         <hsqldb.version>1.8.0.10</hsqldb.version><!-- 1.8.0.10, 1.9.0-rc6 (manualy build only for debugging) -->
 		<httpcomponents.version>4.2.3</httpcomponents.version>
+		<doxia.version>1.3</doxia.version>
     </properties>
     <scm>
         <connection>scm:svn:http://dev.e-taxonomy.eu/svn/trunk/cdmlib/</connection>
@@ -236,7 +233,7 @@
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-surefire-plugin</artifactId>
                 <configuration>
-                    <argLine>-Xmx600M</argLine>
+                    <argLine>-Xmx512M -XX:MaxPermSize=128M</argLine>
                     <runOrder>alphabetical</runOrder>
 					<includes>
                         <include>**/*Test.java</include>
@@ -615,7 +612,7 @@
             <dependency>
                 <groupId>javax.xml.bind</groupId>
                 <artifactId>jaxb-api</artifactId>
-                <version>2.1.6</version>
+                <version>2.2.7</version>
             </dependency>
             <dependency>
                 <groupId>xml-resolver</groupId>
@@ -630,17 +627,17 @@
             <dependency>
                 <groupId>com.sun.xml.bind</groupId>
                 <artifactId>jaxb-impl</artifactId>
-                <version>2.1.6</version>
+                <version>2.2-EA</version>
             </dependency>
             <dependency>
                 <groupId>com.sun.xml.bind</groupId>
                 <artifactId>jaxb1-impl</artifactId>
-                <version>2.1.6</version>
+                <version>2.2-EA</version>
             </dependency>
             <dependency>
                 <groupId>com.sun.xml.bind</groupId>
                 <artifactId>jaxb-xjc</artifactId>
-                <version>2.1.6</version>
+                <version>2.2-EA</version>
             </dependency>
             <!-- ******* hibernate uses slf4j ******* -->
             <dependency>
@@ -747,6 +744,10 @@
                 <exclusion>
                     <groupId>org.springframework</groupId>
                     <artifactId>spring-orm</artifactId>
+                </exclusion>
+				<exclusion>
+                    <groupId>javax.persistence</groupId>
+                    <artifactId>persistence-api</artifactId>
                 </exclusion>
             </exclusions>
         </dependency>
@@ -771,6 +772,10 @@
                     <exclusion>
                         <groupId>org.springframework</groupId>
                         <artifactId>spring-test</artifactId>
+                    </exclusion>                    
+                    <exclusion>
+                        <groupId>org.springframework</groupId>
+                        <artifactId>spring-tx</artifactId>
                     </exclusion>
                 </exclusions>
 	        </dependency>
@@ -813,11 +818,11 @@
 	            <version>1.7.1</version>
 	        </dependency>
       <!-- ******* VARIOUS ******* -->
-      <dependency>
-        <groupId>log4j</groupId>
-        <artifactId>log4j</artifactId>
-        <version>1.2.15</version>
-      </dependency>
+		  <dependency>
+			<groupId>log4j</groupId>
+			<artifactId>log4j</artifactId>
+			<version>1.2.17</version>
+		  </dependency>
             <dependency>
                 <groupId>javax.annotation</groupId>
                 <artifactId>jsr250-api</artifactId>
@@ -861,14 +866,38 @@
 			<dependency>
 				<groupId>org.apache.httpcomponents</groupId>
 				<artifactId>httpcore</artifactId>
-				<version>${httpcomponents.version}</version>
+			<!--	<version>${httpcomponents.version}</version> -->
+				<version>4.2.4</version>
 			</dependency>
             <dependency>
                 <groupId>commons-io</groupId>
                 <artifactId>commons-io</artifactId>
                 <version>2.4</version>
             </dependency>
-            <dependency>
+			<!-- only for version management, poi currently requires 1.6, commons-logging 1.1.1 requires 1.6, so we update here to the latest version -->
+			<dependency>
+			    <groupId>commons-codec</groupId>
+				<artifactId>commons-codec</artifactId>
+				<version>20041127.091804</version>  <!-- probably same as commons-codec version 1.8 --> 
+			</dependency>
+			<!-- only for version management, httpcore:4.2.4, commons-beanutils:1.8.3, commons-collections:3.2.1 currently require 1.1.1 , httpclient:4.2.3, spring-modules-cache require 1.1 and batik-ext requires 1.0.4, so we update here to the latest version 1.1.2 -->
+			<dependency>
+				<groupId>commons-logging</groupId>
+				<artifactId>commons-logging</artifactId>
+				<version>1.1.2</version>
+			</dependency>
+            <!-- only for version management, hibernate-commons-annotations:4.0.1.Final requires 3.1.0.CR2 , hibernate-ehcache:4.1.10  requires 3.1.0.GA , so we update here to the latest version 3.1.3.GA -->
+			<dependency>
+				<groupId>org.jboss.logging</groupId>
+				<artifactId>jboss-logging</artifactId>
+				<version>3.1.3.GA</version>
+			</dependency>
+			<!-- TODO com.springsource.org.aopalliance  and com.springsource.org.apache.commons.logging seem to be duplicates of e.g. apache commons-logging. Needs to be further checked.   
+			-->
+			<!-- TODO xerces xmlParserAPIs duplicates many classes from jre and xml-apis. It is a dependency that comes with xom:xom  -->
+			
+			
+			<dependency>
                 <groupId>net.sf.ezmorph</groupId>
                 <artifactId>ezmorph</artifactId>
                 <version>1.0.6</version>
@@ -878,11 +907,6 @@
                 <artifactId>commons-beanutils</artifactId>
                 <version>1.8.3</version>
             </dependency>
-<!-- 			<dependency> -->
-<!-- 				<groupId>net.sf.sojo</groupId> -->
-<!-- 				<artifactId>sojo</artifactId> -->
-<!-- 				<version>1.0.5</version> -->
-<!-- 			</dependency> -->
             <dependency>
                 <groupId>net.sf.json-lib</groupId>
                 <artifactId>json-lib</artifactId>
@@ -916,31 +940,6 @@
 				<version>2.0.1</version>
 			</dependency>
             
-            <!-- <dependency>
-                <groupId>joda-time</groupId>
-                <artifactId>joda-time-hibernate</artifactId>
-                <version>1.0</version>
-                <exclusions>
-                    <exclusion>
-                        <artifactId>ehcache</artifactId>
-                        <groupId>ehcache</groupId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>cglib</groupId>
-                        <artifactId>cglib-full</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.hibernate</groupId>
-                        <artifactId>hibernate</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>hibernate</groupId>
-                        <artifactId>hibernate</artifactId>
-                    </exclusion>
-                </exclusions>
-            </dependency> -->
-            
-            
             <dependency>
                 <groupId>org.apache.lucene</groupId>
                 <artifactId>lucene-core</artifactId>
@@ -961,6 +960,11 @@
 		       <artifactId>lucene-grouping</artifactId>
 		       <version>${lucene.version}</version>
 		    </dependency>
+            <dependency>
+               <groupId>org.apache.lucene</groupId>
+               <artifactId>lucene-join</artifactId>
+               <version>${lucene.version}</version>
+            </dependency>
 
             <dependency>
                 <groupId>com.ibm.lsid</groupId>
@@ -982,6 +986,7 @@
                 <artifactId>dozer</artifactId>
                 <version>5.3.0</version>
             </dependency>
+
             <!-- ******* XML ******* -->
             <dependency>
                 <groupId>xml-apis</groupId>
@@ -991,8 +996,46 @@
             <dependency>
                 <groupId>xerces</groupId>
                 <artifactId>xercesImpl</artifactId>
-                <version>2.7.1</version>
-            </dependency>
+                <version>2.11.0</version>
+            </dependency>
+              <!-- >batik-ext required by Xerces 2.11.0 for class ElementTraversal, as this is not included anymore in xml-apis 2.x-->
+			  <dependency>
+				<groupId>org.apache.xmlgraphics</groupId>
+				<artifactId>batik-ext</artifactId>
+				<version>1.7</version>
+			  </dependency>
+          	<dependency> <!-- required by cdmlib-print -->
+				<groupId>org.apache.xmlgraphics</groupId>
+				<artifactId>fop</artifactId>
+				<!-- version 1.1 does NOT work, because it depends on avalon-framework-api 4.2.0 which is not available in central maven repository under the given groupID  -->
+				<version>1.1</version>
+				<exclusions>
+					<!-- 1.1 depends on an old version of avalon-framework which does not exist in mvn repository under this groupId (has old groupId) -->
+					<exclusion>
+						<groupId>org.apache.avalon.framework</groupId>
+						<artifactId>avalon-framework-api</artifactId>
+					</exclusion>
+					<exclusion>
+						<groupId>org.apache.avalon.framework</groupId>
+						<artifactId>avalon-framework-impl</artifactId>
+					</exclusion>
+				</exclusions>
+			</dependency>
+            <!-- not directly required, but fix mentioned to force 
+              correct version number 4.3.1. Required by org.apache.xmlgraphics/fop 1.1 
+              Remove when dependency in fop in corrected.
+              --> 
+            <dependency>
+				<groupId>org.apache.avalon.framework</groupId>
+				<artifactId>avalon-framework-api</artifactId>
+				<version>4.3.1</version>
+			</dependency>
+			<dependency>
+			<groupId>org.odftoolkit</groupId>
+				<artifactId>odfdom-java</artifactId>
+				<version>0.8.7</version>
+			</dependency>
+            
             <dependency>
                 <groupId>jaxen</groupId>
                 <artifactId>jaxen</artifactId>
@@ -1023,6 +1066,28 @@
                 <artifactId>xom</artifactId>
                 <version>1.0</version>
             </dependency>
+	<!-- ******* SAXON (ViBRANT)******* -->
+	<dependency>
+		<groupId>net.sf.saxon</groupId>
+		<artifactId>Saxon-HE</artifactId>
+		<version>9.5.1-2</version>
+	</dependency>
+	<!-- ******* http components (ViBRANT)******* -->
+	<dependency>
+                <groupId>org.apache.httpcomponents</groupId>
+                <artifactId>httpmime</artifactId>
+                <version>${httpcomponents.version}</version>
+	</dependency>
+<dependency>
+	<groupId>org.apache.httpcomponents</groupId>
+	<artifactId>httpmime</artifactId>
+	<version>4.2.3</version>
+</dependency>
+<dependency>
+	<groupId>org.json</groupId>
+	<artifactId>json</artifactId>
+	<version>20090211</version>
+</dependency>
             <!-- ******* HIBERNATE / EJB3 ******* -->
        <dependency>
                 <groupId>org.hibernate.javax.persistence</groupId>
@@ -1078,7 +1143,7 @@
             <dependency>
                 <groupId>org.hibernate.common</groupId>
                 <artifactId>hibernate-commons-annotations</artifactId>
-				<version>4.0.1.FINAL</version>
+				<version>4.0.1.Final</version>
             </dependency>
 		    <dependency>
 		    	<groupId>org.hibernate</groupId>
@@ -1099,11 +1164,11 @@
                     </exclusion>
                 </exclusions>
             </dependency>
-            <dependency>
-                <groupId>javassist</groupId>
-                <artifactId>javassist</artifactId>
-                <version>3.12.1.GA</version>
-            </dependency>
+			<dependency>
+				<groupId>org.javassist</groupId>
+				<artifactId>javassist</artifactId>
+				<version>3.17.1-GA</version>
+			</dependency>
             <dependency>
                 <groupId>org.hibernate</groupId>
                 <artifactId>hibernate-cglib-repack</artifactId>
@@ -1184,8 +1249,6 @@
                 <artifactId>spring-context-support</artifactId>
                 <version>${spring.version}</version>
             </dependency> 
-            
-            
             <dependency>
                 <groupId>org.springframework</groupId>
                 <artifactId>org.springframework.oxm</artifactId>
@@ -1198,90 +1261,57 @@
                 <exclusions>
                   <exclusion>
                     <groupId>org.springframework</groupId>
-                    <artifactId>spring-expression</artifactId>
+                  	<artifactId>spring-aop</artifactId>
                   </exclusion>
                   <exclusion>
-                    <groupId>org.springframework</groupId>
+                  	<groupId>org.springframework</groupId>
                     <artifactId>spring-beans</artifactId>
                   </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-context</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-core</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-orm</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-aop</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-support</artifactId>
-                    </exclusion>
+                  <exclusion>
+                  	<groupId>org.springframework</groupId>
+                    <artifactId>spring-context</artifactId>
+                  </exclusion>
+                  <exclusion>
+	              	<groupId>org.springframework</groupId>
+                    <artifactId>spring-core</artifactId>
+                  </exclusion>
+                  <exclusion>
+                    <groupId>org.springframework</groupId>
+                    <artifactId>spring-expression</artifactId>
+                  </exclusion>
+                  <exclusion>
+                  	<groupId>org.springframework</groupId>
+                    <artifactId>spring-tx</artifactId>
+                  </exclusion>
                 </exclusions>
             </dependency>
-            <dependency>
-                <groupId>org.springframework.security</groupId>
-                <artifactId>spring-security-context</artifactId>  <!-- could not find this on http://mvnrepository.com/ -->
-                <version>${spring-security.version}</version>
-            </dependency>
-            <dependency>  <!-- needed for the FSDirectoryFactoryBean -->
-                <groupId>org.springmodules</groupId>
-                <artifactId>spring-modules-lucene</artifactId>
-                <version>0.8</version>
-                <exclusions>
-                    <exclusion>
-                        <groupId>org.apache.lucene</groupId>
-                        <artifactId>lucene-core</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.apache</groupId>
-                        <artifactId>poi</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.apache</groupId>
-                        <artifactId>poi-scratchpad</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-dao</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-jca</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-support</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-beans</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-aop</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-context</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-core</artifactId>
-                    </exclusion>
-                    <exclusion>
-                        <groupId>org.springframework</groupId>
-                        <artifactId>spring-jdbc</artifactId>
-                    </exclusion>
+		    <dependency>
+		    	<groupId>org.springframework.security</groupId>
+		   		<artifactId>spring-security-config</artifactId>
+		        <version>${spring-security.version}</version>
+		        <exclusions>
+                  <exclusion>
+                    <groupId>org.springframework</groupId>
+                  	<artifactId>spring-aop</artifactId>
+                  </exclusion>
+                  <exclusion>
+                  	<groupId>org.springframework</groupId>
+                    <artifactId>spring-beans</artifactId>
+                  </exclusion>
+                  <exclusion>
+                  	<groupId>org.springframework</groupId>
+                    <artifactId>spring-context</artifactId>
+                  </exclusion>
+                  <exclusion>
+	              	<groupId>org.springframework</groupId>
+                    <artifactId>spring-core</artifactId>
+                  </exclusion>
+                  <exclusion>
+                  	<groupId>org.springframework</groupId>
+                    <artifactId>spring-web</artifactId>
+                  </exclusion>
                 </exclusions>
-            </dependency>
+            </dependency>            
             
             <!-- ******* SERVLET/JSP/JSF ******* -->
             <dependency>
@@ -1297,9 +1327,9 @@
                 <version>1.3.0</version>
             </dependency>
             <dependency>
-                <groupId>mysql</groupId>
-                <artifactId>mysql-connector-java</artifactId>
-                <version>5.1.23</version>
+				<groupId>mysql</groupId>
+				<artifactId>mysql-connector-java</artifactId>
+				<version>5.1.24</version>
             </dependency>
             <dependency>
                 <groupId>postgresql</groupId>
@@ -1318,38 +1348,12 @@
                 <artifactId>jdbc4</artifactId>
                 <version>2.0</version>
             </dependency>
-            <!-- use SQL Server 2005 driver instead (com.microsoft.sqlserver/jdbc)
-        <dependency>
-            <groupId>com.microsoft.jdbcdriver</groupId>
-            <artifactId>mssqlserver</artifactId>
-            <version>2000.3</version>
-        </dependency>
-        <dependency>
-            <groupId>com.microsoft.jdbcdriver</groupId>
-            <artifactId>msutil</artifactId>
-            <version>2000.3</version>
-        </dependency>
-        <dependency>
-            <groupId>com.microsoft.jdbcdriver</groupId>
-            <artifactId>msbase</artifactId>
-            <version>2000.3</version>
-        </dependency>
--->
+
             <dependency>
                 <groupId>oracle</groupId>
                 <artifactId>ojdbc14</artifactId>
                 <version>10.2.0.4.0</version>
             </dependency>
-            <!--dependency>
-                <groupId>oracle</groupId>
-                <artifactId>ojdbc14</artifactId>
-                <version>9i</version>
-            </dependency>
-            <dependency>
-                <groupId>oracle</groupId>
-                <artifactId>ojdbc14</artifactId>
-                <version>9.2.0.5</version>
-            </dependency-->
             <dependency>
                 <groupId>com.h2database</groupId>
                 <artifactId>h2</artifactId>
@@ -1361,6 +1365,8 @@
                 <groupId>com.yourkit</groupId>
                 <artifactId>yjp-controller-api-redist</artifactId>
                 <version>9.0.8</version>
+				<!-- <version>10.0.6</version> TODO find repo or put into our own -->
+				<scope>test</scope>
             </dependency>
             <!-- For Validation -->
             <dependency>
@@ -1390,6 +1396,17 @@
             <version>5.4.0</version>
             <scope>compile</scope>
           </dependency>
+              <!-- AptView -->
+		    <dependency>
+		      	<groupId>org.apache.maven.doxia</groupId>
+		      	<artifactId>doxia-module-apt</artifactId>
+		    	<version>${doxia.version}</version>
+		    </dependency>
+		    <dependency>
+		    	<groupId>org.apache.maven.doxia</groupId>
+		      	<artifactId>doxia-module-xhtml</artifactId>
+		    	<version>${doxia.version}</version>
+		    </dependency>
         </dependencies>
     </dependencyManagement>
 </project>