X-Git-Url: https://dev.e-taxonomy.eu/gitweb/cdmlib.git/blobdiff_plain/8992bc7fe9cd90341884511a42ae14189f08a74e..64addc2b5a1842c6b6eabefec5e63d2f58b1b177:/.gitattributes diff --git a/.gitattributes b/.gitattributes index c8b614db20..6b128df2a6 100644 --- a/.gitattributes +++ b/.gitattributes @@ -209,6 +209,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IDbImportTransformed. cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IDbImportTransformer.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IInputTransformer.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IMappingImport.java -text +cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IRdfMapper.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IXmlMapper.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/InputTransformerBase.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/MultipleAttributeMapperBase.java -text @@ -477,7 +478,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXModsExtractor.java cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXTreatmentExtractor.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXXMLFieldGetter.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmOneToManyXmlMapper.java -text -cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmSingleAttributeXmlMapperBase.java -text +cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmSingleAttributeRDFMapperBase.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmTextElementMapper.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmUnclearMapper.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfImportBase.java -text @@ -489,6 +490,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTaxonNameImport.java -t cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTaxonNameRelationsImport.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTaxonRelationsImport.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTransformer.java -text +cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/CdmSingleAttributeXmlMapperBase.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/DefaultTcsXmlPlaceholders.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/ITcsXmlPlaceholderClass.java -text cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTransformer.java -text @@ -747,6 +749,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ITreeNode.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IVersionableEntity.java -text svneol=unset#text/plain cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IdentifiableEntity.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IdentifiableSource.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Identifier.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/LSID.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/LSIDAuthority.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/LSIDWSDLLocator.java -text @@ -785,7 +788,6 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermLoader.java -t cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermNotFoundException.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package-info.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package.html -text -cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/AbsenceTerm.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CategoricalData.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CommonTaxonName.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionBase.java -text @@ -807,8 +809,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MultiAccessKey.jav cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/NaturalLanguageTerm.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKey.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKeyNode.java -text -cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBase.java -text -cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceTerm.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTerm.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/QuantitativeData.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/SpecimenDescription.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/State.java -text @@ -850,6 +851,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/PreferencePredicate.j cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/PreferenceSubject.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Amplification.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Cloning.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaQuality.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaSample.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/PhylogeneticTree.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Primer.java -text @@ -947,10 +949,12 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationship.java - cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationshipType.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/package-info.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/package.html -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/validation/EntityConstraintViolation.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/validation/EntityValidationResult.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/validation/SeverityType.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/AuditEvent.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/AuditEventRecord.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/AuditEventRecordImpl.java -text -cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/View.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/context/AuditEventContext.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/context/AuditEventContextHolder.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/context/AuditEventContextHolderStrategy.java -text @@ -1028,8 +1032,10 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/SpecimenTypeParser.j cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TaxonNameParserHistory.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TimePeriodParser.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/location/CoordinateConverter.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/CRUDEventType.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/Level2.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/Level3.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/Severity.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/ValidationException.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/annotation/BasionymsMustShareEpithetsAndAuthors.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/annotation/ChildTaxaMustBeLowerRankThanParent.java -text @@ -1059,7 +1065,6 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/constraint/StubValidator. cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/constraint/TaxonNameCannotBeAcceptedAndSynonymValidator.java -text cdmlib-model/src/main/resources/ValidationMessages.properties -text cdmlib-model/src/main/resources/log4j.properties -text -cdmlib-model/src/main/resources/terms/AbsenceTerm.csv -text cdmlib-model/src/main/resources/terms/AnnotationType.csv -text cdmlib-model/src/main/resources/terms/Continent.csv -text cdmlib-model/src/main/resources/terms/Country.csv -text @@ -1067,10 +1072,12 @@ cdmlib-model/src/main/resources/terms/DerivationEventType.csv -text cdmlib-model/src/main/resources/terms/DeterminationModifier.csv -text cdmlib-model/src/main/resources/terms/DnaMarkerChloroplast.csv -text cdmlib-model/src/main/resources/terms/DnaMarkerEukaryote.csv -text +cdmlib-model/src/main/resources/terms/DnaQuality.csv -text cdmlib-model/src/main/resources/terms/ExtensionType.csv -text cdmlib-model/src/main/resources/terms/Feature.csv -text cdmlib-model/src/main/resources/terms/FormerCountries -text cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text +cdmlib-model/src/main/resources/terms/IdentifierType.csv -text cdmlib-model/src/main/resources/terms/InstitutionType.csv -text cdmlib-model/src/main/resources/terms/Language.csv -text cdmlib-model/src/main/resources/terms/MarkerType.csv -text @@ -1088,7 +1095,7 @@ cdmlib-model/src/main/resources/terms/NomenclaturalCode.csv -text cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text cdmlib-model/src/main/resources/terms/NomenclaturalStatusTypeIczn.csv -text cdmlib-model/src/main/resources/terms/PlantKindOfUnit.csv -text -cdmlib-model/src/main/resources/terms/PresenceTerm.csv -text +cdmlib-model/src/main/resources/terms/PresenceAbsenceTerm.csv -text cdmlib-model/src/main/resources/terms/PreservationMethod.csv -text cdmlib-model/src/main/resources/terms/README.TXT -text cdmlib-model/src/main/resources/terms/Rank.csv -text @@ -1140,7 +1147,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/DescriptionElement cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/FeatureTreeTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PolytomousKeyNodeTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PolytomousKeyTest.java -text -cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBaseTest.java -text +cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/TextDataTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/NamedAreaTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/PointTest.java -text @@ -1188,6 +1195,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/BookSection cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/CdDvdDefaultCacheStrategyTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/GenericDefaultCacheStrategyTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/ReferenceTypeTest.java -text +cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/WebPageDefaultCacheStrategyTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/taxon/TaxonBaseDefaultCacheStrategyTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/generate/IdentificationKeyGeneratorTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/match/DefaultMatchStrategyTest.java -text @@ -1312,6 +1320,10 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SchemaU cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SpecimenMediaMoverUpdater.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/TermUpdater_31_33.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/TermVocabularyRepresentationUpdater.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v33_34/SchemaUpdater_331_34.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v33_34/SchemaUpdater_34_341.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v33_34/TermUpdater_33_34.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v33_34/UsernameConstraintUpdater.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IAlternativeSpellingSuggestionParser.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IMethodCache.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/MethodCacheImpl.java -text @@ -1561,6 +1573,7 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permissio cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/CdmDeleteListenerTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/replace/ReferringObjectMetadataFactoryTest.java -text +cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/profiler/ProfileController.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/profiler/ProfilerController.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestCdmApplicationUtils.java -text @@ -2074,15 +2087,22 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/MetadataController.j cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/Utils.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/VaadinConfigurer.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/VaadinUI.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/CellRendererTable.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/ClassificationSelectionForm.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/DemoTaxonTable.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/DetailWindow.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/DistributionSelectionForm.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/HorizontalToolbar.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/LoginForm.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/TaxonTableDTO.java -text -cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/service/AuthenticationService.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/data/LazyLoadedContainer.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/data/LazyLoadedIndexedContainer.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/service/VaadinAuthenticationService.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/disabled/DefaultView.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/BfnView.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/ClassificationSelectorView.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/DashBoardView.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/DistributionSelectorView.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/ErrorView.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/LoginView.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/widgetset/AppWidgetSet.gwt.xml -text @@ -2152,7 +2172,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/ICdmApplicationCo cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/MonitoredGenericApplicationContext.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/MonitoredListableBeanFactory.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/cache/CdmCacher.java -text -cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/cache/CdmDaoCacher.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/cache/CdmTermCacher.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/ConversationHolder.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/ConversationHolderMock.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/IConversationEnabled.java -text @@ -2255,12 +2275,14 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IdentifiableSe cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IncludedTaxonConfiguration.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/MatchingTaxonConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/NameDeletionConfigurator.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/SpecimenDeleteConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/SynonymDeletionConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonBaseDeletionConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonDeletionConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonNodeDeletionConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TermDeletionConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/description/TransmissionEngineDistribution.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/DerivateHierarchyDTO.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/DistributionInfoDTO.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/IncludedTaxaDTO.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/DataChangeNoRollbackException.java -text