X-Git-Url: https://dev.e-taxonomy.eu/gitweb/cdmlib.git/blobdiff_plain/704154d3dda1e2be08533895971e39cae45a5837..5e5ee88485cd15f29f5c03b717afaaa6922de8c9:/.gitattributes diff --git a/.gitattributes b/.gitattributes index a73c3a1e33..39c4f0f937 100644 --- a/.gitattributes +++ b/.gitattributes @@ -51,10 +51,6 @@ cdmlib-ext/pom.xml -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciSchemaAdapter.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciServiceWrapper.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/IBciServiceWrapper.java -text -cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQuery.java -text -cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryGenerator.java -text -cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapper.java -text -cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseResponseSchemaAdapter.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/SchemaAdapterBase.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/ServiceWrapperBase.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/dc/DublinCoreSchemaAdapter.java -text @@ -72,6 +68,15 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceAuthorConfigurator cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceConfiguratorBase.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceNamesConfigurator.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServicePublicationConfigurator.java -text +cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/OccurenceQuery.java -text +cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryGenerator.java -text +cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryServiceWrapper.java -text +cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/DataSetResponse.java -text +cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifDataSetProtocol.java -text +cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifJsonOccurrenceParser.java -text +cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifQueryGenerator.java -text +cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifQueryServiceWrapper.java -text +cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifResponse.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlQuery.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlResponseSchemaAdapter.java -text cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapper.java -text @@ -80,10 +85,11 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/scratchpads/ScratchpadsService.jav cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapper.java -text cdmlib-ext/src/main/resources/eu/etaxonomy/cdm/ext/geo/mapServices_v10.xsd -text cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/bci/BciServiceTest.java -text -cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapperTest.java -text cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/EditGeoServiceTest.java -text cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/GeoServiceAreaTest.java -text cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceTest.java -text +cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryServiceWrapperTest.java -text +cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifQueryServiceWrapperTest.java -text cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapperTest.java -text cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapperTest.java -text cdmlib-ext/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text @@ -691,6 +697,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/PartialAdapter.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/TDWGNamespacePrefixMapper.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/UUIDAdapter.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/CdmBaseType.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/ICdmCacher.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Address.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/AgentBase.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Contact.java -text @@ -770,6 +777,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/VocabularyEnum.java -te cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/WrongTermTypeException.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/ITermInitializer.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/ITermLoader.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/MockCdmCacher.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermLoader.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermNotFoundException.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package-info.java -text @@ -985,6 +993,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/InRefDefaul cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/JournalDefaultCacheStrategy.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/NomRefDefaultCacheStrategyBase.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/ReferenceDefaultCacheStrategy.java -text +cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/SectionDefaultCacheStrategy.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/ThesisDefaultCacheStrategy.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/taxon/TaxonBaseDefaultCacheStrategy.java -text cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/StringNotParsableException.java -text @@ -1056,11 +1065,13 @@ cdmlib-model/src/main/resources/terms/DnaMarkerChloroplast.csv -text cdmlib-model/src/main/resources/terms/DnaMarkerEukaryote.csv -text cdmlib-model/src/main/resources/terms/ExtensionType.csv -text cdmlib-model/src/main/resources/terms/Feature.csv -text +cdmlib-model/src/main/resources/terms/FormerCountries -text cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text cdmlib-model/src/main/resources/terms/InstitutionType.csv -text cdmlib-model/src/main/resources/terms/Language.csv -text cdmlib-model/src/main/resources/terms/MarkerType.csv -text cdmlib-model/src/main/resources/terms/MeasurementUnit.csv -text +cdmlib-model/src/main/resources/terms/MediaSpecimenKindOfUnit.csv -text cdmlib-model/src/main/resources/terms/Modifier.csv -text cdmlib-model/src/main/resources/terms/NameFeature.csv -text cdmlib-model/src/main/resources/terms/NameRelationshipType.csv -text @@ -1274,6 +1285,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UniqueIndexDro cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UpdaterBase.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/VocabularyCreator.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/permissions/PermissionsUpdater.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/test/ValidateForeignKeys.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/SchemaUpdater_24_25.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/TermUpdater_24_25.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/FeatureNodeTreeColumnUpdater.java -text @@ -1420,6 +1432,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/statistics/ISt cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/IClassificationDao.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonNodeDao.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/LogicFilter.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/TaxonNodeFilter.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/TaxonNodeFilterDaoHibernateImpl.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/fetch/CdmFetch.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGenerator.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CdmDataChangeEvent.java -text @@ -1535,6 +1550,7 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/stat cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplBenchmark.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.java -text +cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/tmp/TaxonNodeFilterDaoHibernateImplTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDaoTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permission/CdmAuthorityTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permission/CdmPermissionClassTest.java -text @@ -1629,6 +1645,9 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testFindDeleted.xml -text cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml -text cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.xml -text +cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.testSortindexForJavassist-result.xml -text +cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.testSortindexForJavassist.xml -text +cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.testSortindexForJavassist2-result.xml -text cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.xml -text cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDaoTest.xml -text cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.testOnSaveOrUpdateAgents-result.xml -text @@ -1954,7 +1973,6 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/AbstractLi cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/LinkedPolytomousKeyNodeRowDto.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/PolytomousKeyNodeLinkDto.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/TaxonLinkDto.java -text -cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/redlist/RedlistDTO.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/Actor.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/BaseThing.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/Concept.java -text @@ -1975,6 +1993,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/TaxonConcept.ja cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/TaxonName.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/TaxonRelationshipTerm.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/Team.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/vaadin/CdmTaxonTableCollection.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/CdmTypePropertyEditor.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/DateTimeEditor.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/DefinedTermBaseList.java -text @@ -2123,6 +2142,8 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/FirstDataInserter cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/ICdmApplicationConfiguration.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/MonitoredGenericApplicationContext.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/MonitoredListableBeanFactory.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/cache/CdmCacher.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/cache/CdmDaoCacher.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/ConversationHolder.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/ConversationHolderMock.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/IConversationEnabled.java -text @@ -2222,6 +2243,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IFindTaxaAndNa cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IIdentifiableEntityServiceConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IdentifiableServiceConfiguratorFactory.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IdentifiableServiceConfiguratorImpl.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IncludedTaxonConfiguration.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/MatchingTaxonConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/NameDeletionConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/SynonymDeletionConfigurator.java -text @@ -2231,6 +2253,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonNodeDelet cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TermDeletionConfigurator.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/description/TransmissionEngineDistribution.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/DistributionInfoDTO.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/IncludedTaxaDTO.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/DataChangeNoRollbackException.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/HomotypicalGroupChangeException.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/ReferencedObjectUndeletableException.java -text @@ -2301,6 +2324,8 @@ cdmlib-services/src/main/resources/wsdl/LSIDDataServiceHTTPBindings.wsdl -text cdmlib-services/src/main/resources/wsdl/LSIDDataServiceSOAPBindings.wsdl -text cdmlib-services/src/main/resources/wsdl/LSIDPortTypes.wsdl -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/application/FirstDataInserterTest.java -text +cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/cache/CdmCacherTest.java -text +cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/cache/MockCdmCacher.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldUnitCacheStrategyTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.java -text @@ -2432,15 +2457,21 @@ src/site/apt/index.apt -text src/site/apt/oai-pmh.apt -text src/site/apt/overview.apt -text src/site/apt/reference.apt -text +src/site/apt/remote/checklist-catalogue-default.apt -text +src/site/apt/remote/checklist-catalogue-export.apt -text +src/site/apt/remote/checklist-catalogue-exportCSV.apt -text +src/site/apt/remote/checklist-catalogue-flockSearch.apt -text src/site/apt/remote/name-catalogue-accepted.apt -text src/site/apt/remote/name-catalogue-default.apt -text src/site/apt/remote/name-catalogue-fuzzy.apt -text src/site/apt/remote/name-catalogue-name-info.apt -text src/site/apt/remote/name-catalogue-taxon-info.apt -text +src/site/apt/remote/occurrence-catalogue-default.apt -text src/site/apt/remote/search-fulltext-info.apt -text src/site/apt/remote/search-name-default.apt -text src/site/apt/remote/search-taxon-info.apt -text src/site/apt/rest-api-name-catalogue.apt -text +src/site/apt/rest-api-occurrence-catalogue.apt -text src/site/apt/rest-api-search.apt -text src/site/apt/rest-api-statistics.apt -text src/site/apt/rest-api.apt -text