X-Git-Url: https://dev.e-taxonomy.eu/gitweb/cdmlib.git/blobdiff_plain/29ab3449d5e58e308f1f744fbcfdeb8a1db1ac54..9ab2b45b316e9ce3bdb03d7505d2a930d05dca9e:/.gitattributes diff --git a/.gitattributes b/.gitattributes index 35c612526d..f0e8b61a9f 100644 --- a/.gitattributes +++ b/.gitattributes @@ -1056,6 +1056,7 @@ cdmlib-model/src/main/resources/terms/DnaMarkerChloroplast.csv -text cdmlib-model/src/main/resources/terms/DnaMarkerEukaryote.csv -text cdmlib-model/src/main/resources/terms/ExtensionType.csv -text cdmlib-model/src/main/resources/terms/Feature.csv -text +cdmlib-model/src/main/resources/terms/FormerCountries -text cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text cdmlib-model/src/main/resources/terms/InstitutionType.csv -text cdmlib-model/src/main/resources/terms/Language.csv -text @@ -1071,6 +1072,7 @@ cdmlib-model/src/main/resources/terms/NamedAreaType.csv -text cdmlib-model/src/main/resources/terms/NaturalLanguageTerm.csv -text cdmlib-model/src/main/resources/terms/NomenclaturalCode.csv -text cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text +cdmlib-model/src/main/resources/terms/NomenclaturalStatusTypeIczn.csv -text cdmlib-model/src/main/resources/terms/PlantKindOfUnit.csv -text cdmlib-model/src/main/resources/terms/PresenceTerm.csv -text cdmlib-model/src/main/resources/terms/PreservationMethod.csv -text @@ -1162,6 +1164,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/common/TermDefaultCac cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/description/TaxonDescriptionDefaultCacheStrategyTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/media/MediaDefaultCacheStrategyTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/BotanicNameCacheStrategyTest.java -text +cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/NameCacheStrategyTestBase.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/NonViralNameDefaultCacheStrategyTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/ZooNameNoMarkerCacheStrategyTest.java -text cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/ZoologicalNameCacheStrategyTest.java -text @@ -1199,7 +1202,13 @@ cdmlib-persistence/LICENSE.TXT -text cdmlib-persistence/README.TXT -text cdmlib-persistence/pom.xml -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationUtils.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmPersistentSourceUtils.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmPersistentXMLSource.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmSource.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmSourceException.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/Configuration.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/ICdmPersistentSource.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/ICdmSource.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSource.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSourceBase.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmPersistentDataSource.java -text @@ -1367,6 +1376,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/desc cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaDaoHibernateImpl.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationHibernateImpl.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartHibernateImpl.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/AmplificationDaoHibernateImpl.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/PrimerDaoHibernateImpl.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/SequenceDaoHibernateImpl.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/HomotypicalGroupDaoHibernateImpl.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/NomenclaturalStatusDaoHibernateImpl.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TaxonNameDaoHibernateImpl.java -text @@ -1395,6 +1407,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/Ty cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaDao.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationDao.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationPartDao.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/IAmplificationDao.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/IPrimerDao.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/ISequenceDao.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/IHomotypicalGroupDao.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/INomenclaturalStatusDao.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/ITaxonNameDao.java -text @@ -1436,8 +1451,11 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permissi cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/DescriptionBaseVoter.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/DescriptionElementVoter.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/GrantAlwaysVoter.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/ReferenceVoter.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/TaxonBaseVoter.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/TaxonNameBaseVoter.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/TaxonNodeVoter.java -text +cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/TeamOrPersonBaseVoter.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/replace/ReferringObjectMetadata.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/replace/ReferringObjectMetadataFactory.java -text cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/replace/impl/ListReferringObjectMetadata.java -text @@ -1520,6 +1538,7 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxo cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDaoTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permission/CdmAuthorityTest.java -text +cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permission/CdmPermissionClassTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/CdmDeleteListenerTest.java -text cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/replace/ReferringObjectMetadataFactoryTest.java -text @@ -1788,7 +1807,15 @@ cdmlib-remote-webapp/src/main/webapp/xsl/name.xsl -text cdmlib-remote-webapp/src/main/webapp/xsl/oai2.xsl -text cdmlib-remote-webapp/src/main/webapp/xsl/statistics.xsl -text cdmlib-remote-webapp/src/main/webapp/xsl/taxon.xsl -text -cdmlib-remote-webapp/src/test/java/eu/etaxonomy/AppTest.java -text +cdmlib-remote-webapp/src/test/java/eu/etaxonomy/cdm/remote/ClassificationIT.java -text +cdmlib-remote-webapp/src/test/resources/datasources.xml -text +cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty-http.xml -text +cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty-https.xml -text +cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty-ssl.xml -text +cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty.xml -text +cdmlib-remote-webapp/src/test/resources/h2/cdmTest.h2.db -text svneol=unset#unset +cdmlib-remote-webapp/src/test/resources/log4j.properties -text +cdmlib-remote/.springBeans -text cdmlib-remote/LICENSE.TXT -text cdmlib-remote/README.TXT -text cdmlib-remote/pom.xml -text @@ -1856,9 +1883,10 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TermController.ja cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TermListController.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/VocabularyController.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/VocabularyListController.java -text -cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/csv/CsvDemoController.java -text -cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/csv/CsvExportController.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/checklist/ChecklistDemoController.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/checklist/CsvExportController.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/dto/NameCatalogueController.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/dto/OccurrenceCatalogueController.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/dto/PolytomousKeyNodeDtoController.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ext/ExternalBhleController.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ext/ExternalGeoController.java -text @@ -1921,6 +1949,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/SetSpec.java -tex cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/Status.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/Verb.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/package-info.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/occurrencecatalogue/OccurrenceSearch.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/package.html -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/AbstractLinkDto.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/LinkedPolytomousKeyNodeRowDto.java -text @@ -2032,6 +2061,8 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/E cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/LoginView.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/widgetset/AppWidgetSet.gwt.xml -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/BaseView.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/CsvFileDownloadView.java -text +cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/FileDownloadView.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/HtmlView.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/JsonView.java -text cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/OaiPmhResponseView.java -text @@ -2054,6 +2085,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/oaipmh/rdf/ListRecordsV cdmlib-remote/src/main/java/eu/etaxonomy/remote/dto/rdf/Rdf.java -text cdmlib-remote/src/main/java/net/sf/json/CycleSetAcess.java -text cdmlib-remote/src/main/java/ru/xpoft/vaadin/CdmDiscoveryNavigator.java -text +cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote-security.xml -text cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote.xml -text cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/dwc/mappings.xml -text cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/oaipmh/mappings.xml -text @@ -2068,6 +2100,7 @@ cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/assembler/lsid/Assembler cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/AuthorityControllerTest.java -text cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/DataControllerTest.java -text cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/MetadataControllerTest.java -text +cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/JsonToCsvViewTest.java -text cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/OaiPmhViewTest.java -text cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/RdfViewTest.java -text cdmlib-remote/src/test/java/eu/etaxonomy/cdm/test/function/GenericRemoteTester.java -text @@ -2218,6 +2251,12 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/LsidWsdlWra cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/LsidWsdlWrapperImpl.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/Pattern.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/TaxonMetadataMapper.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/AmplificationServiceImpl.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/IAmplificationService.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/IPrimerService.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/ISequenceService.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/PrimerServiceImpl.java -text +cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/SequenceServiceImpl.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/Pager.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/PagerUtils.java -text cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/AbstractPagerImpl.java -text @@ -2249,6 +2288,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/validation/constraint/NoDuplicate cdmlib-services/src/main/java/org/apache/lucene/search/MultiCollector.java -text cdmlib-services/src/main/resources/eu/etaxonomy/cdm/defaultApplicationContext.xml -text cdmlib-services/src/main/resources/eu/etaxonomy/cdm/httpInvokerServices.xml -text +cdmlib-services/src/main/resources/eu/etaxonomy/cdm/remoting-services.xml -text cdmlib-services/src/main/resources/eu/etaxonomy/cdm/services.xml -text cdmlib-services/src/main/resources/eu/etaxonomy/cdm/services_security.xml -text cdmlib-services/src/main/resources/eu/etaxonomy/cdm/validation/name/TaxonNameBase-Constraints.xml -text @@ -2275,6 +2315,7 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentifiableServiceBa cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentificationKeyGeneratorTTT.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGeneratorTest.java -text +cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/OccurenceServiceTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PolytomousKeyNodeServiceTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImplTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PreferenceServiceImplTest.java -text @@ -2293,6 +2334,9 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDAuthoritySer cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDDataServiceTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDMetadataServiceTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDRegistryTest.java -text +cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/AmplificationServiceTest.java -text +cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/PrimerServiceTest.java -text +cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/SequenceServiceTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/pager/PagerTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/utility/DescriptionUtilityTest.java -text cdmlib-services/src/test/java/eu/etaxonomy/cdm/scripts/FixMultipleTextDataInImageGalleries.java -text @@ -2389,6 +2433,7 @@ src/site/apt/index.apt -text src/site/apt/oai-pmh.apt -text src/site/apt/overview.apt -text src/site/apt/reference.apt -text +src/site/apt/remote/checklist-catalogue-default.apt -text src/site/apt/remote/name-catalogue-accepted.apt -text src/site/apt/remote/name-catalogue-default.apt -text src/site/apt/remote/name-catalogue-fuzzy.apt -text @@ -2407,3 +2452,4 @@ src/site/resources/images/cdm-server-oai-pmh.png -text src/site/resources/images/cdmlib-arch4.png -text src/site/resources/images/cdmlib_overview.png -text src/site/site.xml -text +src/test/resources/h2/cdmTest.h2.db -text svneol=unset#unset