import java.util.ArrayList;
import java.util.Arrays;
+import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
+import java.util.Map;
import java.util.Set;
import org.apache.log4j.Logger;
import org.hibernate.criterion.Criterion;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.transaction.annotation.Propagation;
import org.springframework.transaction.annotation.Transactional;
import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
import eu.etaxonomy.cdm.api.service.pager.Pager;
import eu.etaxonomy.cdm.api.service.pager.impl.DefaultPagerImpl;
-import eu.etaxonomy.cdm.common.DefaultProgressMonitor;
-import eu.etaxonomy.cdm.common.IProgressMonitor;
+import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;
+import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
+import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
import eu.etaxonomy.cdm.model.common.CdmBase;
import eu.etaxonomy.cdm.model.common.ISourceable;
import eu.etaxonomy.cdm.model.common.IdentifiableEntity;
import eu.etaxonomy.cdm.model.common.LSID;
import eu.etaxonomy.cdm.model.common.UuidAndTitleCache;
import eu.etaxonomy.cdm.model.media.Rights;
+import eu.etaxonomy.cdm.model.name.NonViralName;
import eu.etaxonomy.cdm.model.reference.Reference;
import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
import eu.etaxonomy.cdm.persistence.dao.common.IIdentifiableDao;
+import eu.etaxonomy.cdm.persistence.dao.hibernate.HibernateBeanInitializer;
+import eu.etaxonomy.cdm.persistence.dao.initializer.AutoPropertyInitializer;
import eu.etaxonomy.cdm.persistence.query.MatchMode;
import eu.etaxonomy.cdm.persistence.query.OrderHint;
import eu.etaxonomy.cdm.persistence.query.OrderHint.SortOrder;
public abstract class IdentifiableServiceBase<T extends IdentifiableEntity,DAO extends IIdentifiableDao<T>> extends AnnotatableServiceBase<T,DAO>
implements IIdentifiableEntityService<T>{
-
- @Autowired
- protected ICommonService commonService;
protected static final int UPDATE_TITLE_CACHE_DEFAULT_STEP_SIZE = 1000;
protected static final Logger logger = Logger.getLogger(IdentifiableServiceBase.class);
+ @Override
@Transactional(readOnly = true)
public Pager<Rights> getRights(T t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
Integer numberOfResults = dao.countRights(t);
return new DefaultPagerImpl<Rights>(pageNumber, numberOfResults, pageSize, results);
}
+ @Override
@Transactional(readOnly = true)
public Pager<IdentifiableSource> getSources(T t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
Integer numberOfResults = dao.countSources(t);
@Transactional(readOnly = false)
+ @Override
public T replace(T x, T y) {
return dao.replace(x, y);
}
* @see eu.etaxonomy.cdm.api.service.ICommonService#getSourcedObjectById(java.lang.String, java.lang.String)
*/
@Transactional(readOnly = true)
+ @Override
public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
ISourceable result = null;
return result;
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
- */
@Transactional(readOnly = true)
+ @Override
public List<UuidAndTitleCache<T>> getUuidAndTitleCache() {
return dao.getUuidAndTitleCache();
}\r
@Transactional(readOnly = true)\r
+ @Override
public Pager<T> findByTitle(Class<? extends T> clazz, String queryString,MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
Integer numberOfResults = dao.countByTitle(clazz, queryString, matchmode, criteria);\r
\r
}
@Transactional(readOnly = true)
+ @Override
public Pager<T> findByTitle(IIdentifiableEntityServiceConfigurator<T> config){
return findByTitle(config.getClazz(), config.getTitleSearchStringSqlized(), config.getMatchMode(), config.getCriteria(), config.getPageSize(), config.getPageNumber(), config.getOrderHints(), config.getPropertyPaths());
}
@Transactional(readOnly = true)
+ @Override
public List<T> listByTitle(Class<? extends T> clazz, String queryString,MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
Integer numberOfResults = dao.countByTitle(clazz, queryString, matchmode, criteria);
}
return results;
}
+
+ @Transactional(readOnly = true)
+ @Override
+ public Pager<T> findTitleCache(Class<? extends T> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode){
+ long numberOfResults = dao.countTitleCache(clazz, queryString, matchMode);
+
+ List<T> results = new ArrayList<T>();
+ if(numberOfResults > 0) { // no point checking again //TODO use AbstractPagerImpl.hasResultsInRange(numberOfResults, pageNumber, pageSize)
+ results = dao.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
+ }
+ int r = 0;
+ r += numberOfResults;
+
+ return new DefaultPagerImpl<T>(pageNumber, r , pageSize, results);
+ }
@Transactional(readOnly = true)
+ @Override
public List<T> listByReferenceTitle(Class<? extends T> clazz, String queryString,MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
Integer numberOfResults = dao.countByReferenceTitle(clazz, queryString, matchmode, criteria);
}
@Transactional(readOnly = true)
+ @Override
public T find(LSID lsid) {
return dao.find(lsid);
}
@Transactional(readOnly = true)
+ @Override
public Pager<T> search(Class<? extends T> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
Integer numberOfResults = dao.count(clazz,queryString);
return new DefaultPagerImpl<T>(pageNumber, numberOfResults, pageSize, results);
}
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
- */
@Override
+ @Transactional(readOnly = false)
public void updateTitleCache() {
updateTitleCache(null, null, null, null);
}
@Transactional(readOnly = false) //TODO check transactional behaviour, e.g. what happens with the session if count is very large
- protected void updateTitleCacheImpl(Class<? extends T> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<T> cacheStrategy, IProgressMonitor monitor) {
+ protected <S extends T > void updateTitleCacheImpl(Class<S> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<T> cacheStrategy, IProgressMonitor monitor) {
if (stepSize == null){
stepSize = UPDATE_TITLE_CACHE_DEFAULT_STEP_SIZE;
}
// not sure if such strict ordering is necessary here, but for safety reasons I do it
ArrayList<OrderHint> orderHints = new ArrayList<OrderHint>();
orderHints.add( new OrderHint("id", OrderHint.SortOrder.ASCENDING));
- List<T> list = this.list(clazz, stepSize, i, orderHints, null);
+
+
+ Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> oldAutoInit = switchOfAutoinitializer();
+ List<S> list = this.list(clazz, stepSize, i, orderHints, null);
+ switchOnOldAutoInitializer(oldAutoInit);
+
List<T> entitiesToUpdate = new ArrayList<T>();
for (T entity : list){
+ HibernateProxyHelper.deproxy(entity, clazz);
if (entity.isProtectedTitleCache() == false){
- IIdentifiableEntityCacheStrategy entityCacheStrategy = cacheStrategy;
- if (entityCacheStrategy == null){
- entityCacheStrategy = entity.getCacheStrategy();
- //FIXME find out why the wrong cache strategy is loaded here, see #1876
- if (entity instanceof Reference){
- entityCacheStrategy = ReferenceFactory.newReference(((Reference)entity).getType()).getCacheStrategy();
- }
- }
- entity.setCacheStrategy(entityCacheStrategy);
- //TODO this won't work for those classes that always generate the title cache new
- String titleCache = entity.getTitleCache();
- setOtherCachesNull(entity); //TODO find better solution
- String newTitleCache = entityCacheStrategy.getTitleCache(entity);
- if (titleCache == null || titleCache != null && ! titleCache.equals(newTitleCache)){
- entity.setTitleCache(null, false);
- entity.getTitleCache();
- entitiesToUpdate.add(entity);
- }
+ updateTitleCacheForSingleEntity(cacheStrategy, entitiesToUpdate, entity);
+ }
+ worked++;
+ }
+ for (T entity: entitiesToUpdate){
+ if (entity.getTitleCache() != null){
+ //System.err.println(entity.getTitleCache());
+ }else{
+ //System.err.println("no titleCache" + ((NonViralName)entity).getNameCache());
}
}
saveOrUpdate(entitiesToUpdate);
- monitor.worked(worked++);
+ monitor.worked(list.size());
if (monitor.isCanceled()){
monitor.done();
return;
}
monitor.done();
}
+
+ /**
+ * Brings back all auto initializers to the bean initializer
+ * @see #switchOfAutoinitializer()
+ * @param oldAutoInit
+ */
+ protected void switchOnOldAutoInitializer(
+ Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> oldAutoInit) {
+ HibernateBeanInitializer initializer = (HibernateBeanInitializer)this.appContext.getBean("defaultBeanInitializer");
+ initializer.setBeanAutoInitializers(oldAutoInit);
+ }
+
+ /**
+ * Removes all auto initializers from the bean initializer
+ *
+ * @see #switchOnOldAutoInitializer(Map)
+ * @return
+ */
+ protected Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> switchOfAutoinitializer() {
+ HibernateBeanInitializer initializer = (HibernateBeanInitializer)this.appContext.getBean("defaultBeanInitializer");
+ Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> oldAutoInitializers = initializer.getBeanAutoInitializers();
+ Map<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>> map = new HashMap<Class<? extends CdmBase>, AutoPropertyInitializer<CdmBase>>();
+ initializer.setBeanAutoInitializers(map);
+ return oldAutoInitializers;
+ }
+
+ /**
+ * @param cacheStrategy
+ * @param entitiesToUpdate
+ * @param entity
+ */
+ /**
+ * @param cacheStrategy
+ * @param entitiesToUpdate
+ * @param entity
+ */
+ private void updateTitleCacheForSingleEntity(
+ IIdentifiableEntityCacheStrategy<T> cacheStrategy,
+ List<T> entitiesToUpdate, T entity) {
+
+ assert (entity.isProtectedTitleCache() == false );
+
+ //exclude recursive inreferences
+ if (entity.isInstanceOf(Reference.class)){
+ Reference<?> ref = CdmBase.deproxy(entity, Reference.class);
+ if (ref.getInReference() != null && ref.getInReference().equals(ref)){
+ return;
+ }
+ }
+
+
+ //define the correct cache strategy
+ IIdentifiableEntityCacheStrategy entityCacheStrategy = cacheStrategy;
+ if (entityCacheStrategy == null){
+ entityCacheStrategy = entity.getCacheStrategy();
+ //FIXME find out why the wrong cache strategy is loaded here, see #1876
+ if (entity instanceof Reference){
+ entityCacheStrategy = ReferenceFactory.newReference(((Reference<?>)entity).getType()).getCacheStrategy();
+ }
+ }
+ entity.setCacheStrategy(entityCacheStrategy);
+
+
+ //old titleCache
+ entity.setProtectedTitleCache(true);
+ String oldTitleCache = entity.getTitleCache();
+ entity.setTitleCache(oldTitleCache, false); //before we had entity.setProtectedTitleCache(false) but this deleted the titleCache itself
+
+ //NonViralNames and Reference have more caches //TODO handle in NameService
+ String oldNameCache = null;
+ String oldFullTitleCache = null;
+ String oldAbbrevTitleCache = null;
+ if (entity instanceof NonViralName ){
+
+ try{
+ NonViralName<?> nvn = (NonViralName) entity;
+ if (!nvn.isProtectedNameCache()){
+ nvn.setProtectedNameCache(true);
+ oldNameCache = nvn.getNameCache();
+ nvn.setProtectedNameCache(false);
+ }
+ if (!nvn.isProtectedFullTitleCache()){
+ nvn.setProtectedFullTitleCache(true);
+ oldFullTitleCache = nvn.getFullTitleCache();
+ nvn.setProtectedFullTitleCache(false);
+ }
+ }catch(ClassCastException e){
+ System.out.println("entity: " + entity.getTitleCache());
+ }
+
+ }else if (entity instanceof Reference){
+ Reference<?> ref = (Reference<?>) entity;
+ if (!ref.isProtectedAbbrevTitleCache()){
+ ref.setProtectedAbbrevTitleCache(true);
+ oldAbbrevTitleCache = ref.getAbbrevTitleCache();
+ ref.setProtectedAbbrevTitleCache(false);
+ }
+ }
+ setOtherCachesNull(entity);
+ String newTitleCache= null;
+ NonViralName<?> nvn = null;//TODO find better solution
+ try{
+ if (entity instanceof NonViralName){
+ nvn = (NonViralName) entity;
+ newTitleCache = entityCacheStrategy.getTitleCache(nvn);
+ } else{
+ newTitleCache = entityCacheStrategy.getTitleCache(entity);
+ }
+ }catch (ClassCastException e){
+ nvn = HibernateProxyHelper.deproxy(entity, NonViralName.class);
+ newTitleCache = entityCacheStrategy.getTitleCache(nvn);
+ //System.out.println("titleCache: " +entity.getTitleCache());
+ }
+
+ if ( oldTitleCache == null || oldTitleCache != null && ! oldTitleCache.equals(newTitleCache) ){
+ entity.setTitleCache(null, false);
+ String newCache = entity.getTitleCache();
+ if (newCache == null){
+ logger.warn("newCache should never be null");
+ }
+ if (oldTitleCache == null){
+ logger.info("oldTitleCache should never be null");
+ }
+ if (nvn != null){
+ //NonViralName<?> nvn = (NonViralName) entity;
+ nvn.getNameCache();
+ nvn.getFullTitleCache();
+ }
+ if (entity instanceof Reference){
+ Reference<?> ref = (Reference<?>) entity;
+ ref.getAbbrevTitleCache();
+ }
+ entitiesToUpdate.add(entity);
+ }else if (nvn != null){
+ //NonViralName<?> nvn = (NonViralName) entity;
+ String newNameCache = nvn.getNameCache();
+ String newFullTitleCache = nvn.getFullTitleCache();
+ if ((oldNameCache == null && !nvn.isProtectedNameCache()) || (oldNameCache != null && !oldNameCache.equals(newNameCache))){
+ entitiesToUpdate.add(entity);
+ }else if ((oldFullTitleCache == null && !nvn.isProtectedFullTitleCache()) || (oldFullTitleCache != null && !oldFullTitleCache.equals(newFullTitleCache))){
+ entitiesToUpdate.add(entity);
+ }
+ }else if (entity instanceof Reference){
+ Reference<?> ref = (Reference<?>) entity;
+ String newAbbrevTitleCache = ref.getAbbrevTitleCache();
+ if ( (oldAbbrevTitleCache == null && !ref.isProtectedAbbrevTitleCache() ) || (oldAbbrevTitleCache != null && !oldAbbrevTitleCache.equals(newAbbrevTitleCache))){
+ entitiesToUpdate.add(entity);
+ }
+ }
+
+
+ }
int result;
}
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
- */
@Override
- @Transactional(propagation = Propagation.SUPPORTS, readOnly = false)
+ @Transactional(readOnly = false)
public int deduplicate(Class<? extends T> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
DeduplicateState dedupState = new DeduplicateState();
return result;
}
- public Integer countByTitle(Class<? extends T> clazz, String queryString,MatchMode matchmode, List<Criterion> criteria){
+ @Transactional(readOnly = true)
+ @Override
+ public Integer countByTitle(Class<? extends T> clazz, String queryString,MatchMode matchmode, List<Criterion> criteria){
Integer numberOfResults = dao.countByTitle(clazz, queryString, matchmode, criteria);
return numberOfResults;
- }
+ }
@Transactional(readOnly = true)
+ @Override
public Integer countByTitle(IIdentifiableEntityServiceConfigurator<T> config){
return countByTitle(config.getClazz(), config.getTitleSearchStringSqlized(),
config.getMatchMode(), config.getCriteria());
}
+
+
+
}\r
BGBM BDI Projects / cdmlib.git / blobdiff