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[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 7f1712ffeae166e917703e70af2d77ffed4b20f8..ac0534d5f8a95fac413c72c9d20e8b66e4df13e4 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -1,6 +1,16 @@
 * text=auto !eol
 /INSTALL.TXT -text
 /LICENSE.TXT -text
+app-import/pom.xml -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/AccountStore.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelImportActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelSources.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/CdmDestinations.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/CichorieaeActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/viennaImport/ViennaActivator.java -text
+app-import/src/main/resources/Asteraceae[!!-~]Specimen[!!-~]Images[!!-~]Vienna.xls -text
+app-import/src/main/resources/AsteraceaeSpecimenImagesVienna.mdb -text
+app-import/src/main/resources/log4j.properties -text
 cdmlib-commons/LICENSE.TXT -text
 cdmlib-commons/README.TXT -text
 cdmlib-commons/pom.xml -text
@@ -10,6 +20,7 @@ cdmlib-commons/src/main/resources/MUST-EXIST.txt -text
 cdmlib-commons/src/main/resources/log4j.properties -text
 cdmlib-commons/src/site/site.xml -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/CdmUtilsTest.java -text
+cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/UuidGenerator.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/XmlHelpTest.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
@@ -20,10 +31,16 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelAuthorIO.java
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelFactsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelNameFactsIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelOccurrenceIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelReferenceIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonNameIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTransformer.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTypesIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmBooleanMapper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmIOMapperBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmStringMapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/ImportHelper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/MapWrapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/source/Source.java -text
@@ -48,43 +65,37 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/TeamOrPersonBase.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotatableEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Annotation.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AudioFile.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/EventBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Extension.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ExtensionType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Figure.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IDefTerm.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ICdmBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IEvent.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IMediaDocumented.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ILoadableTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IOriginalSource.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IParsable.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IReferencedEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IRelated.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IdentifiableEntity.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IdentifyableMediaEntity.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ImageFile.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Keyword.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Language.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/LanguageString.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/LanguageStringBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Marker.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/MarkerType.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Media.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/MediaInstance.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/MovieFile.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/MultilanguageSet.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/NoDefinedTermClassException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OriginalSource.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ReferencedEntityBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ReferencedMedia.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Representation.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Rights.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RightsTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermLanguageComparator.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TimePeriod.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/VersionableEntity.java -text
@@ -92,17 +103,18 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/WrongTermTypeException.
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/DefaultVocabularyStore.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/IVocabularyStore.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermLoader.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermNotFoundException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/AbsenceTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CategoricalData.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CommonTaxonName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionElementBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Distribution.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Feature.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureNode.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureTree.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IdentificationKey.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IndividualsAssociation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MeasurementUnit.java -text
@@ -131,6 +143,17 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/Point.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/ReferenceSystem.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/WaterbodyOrCountry.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/package.html -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/AudioFile.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/IMediaDocumented.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/IdentifyableMediaEntity.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/ImageFile.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/Media.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaRepresentation.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaRepresentationPart.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MovieFile.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/ReferencedMedia.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/Rights.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/RightsTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaSample.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/GenBankAccession.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Locus.java -text
@@ -146,6 +169,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/HybridRelationshipType.ja
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NameRelationship.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NameRelationshipType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NameTypeDesignation.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalCode.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatus.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatusType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NonViralName.java -text
@@ -159,7 +183,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Collection.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEventType.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnit.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnitBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationModifier.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/FieldObservation.java -text
@@ -203,6 +227,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/SynonymRelationship.java
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/SynonymRelationshipType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/Taxon.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonComparator.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationship.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationshipType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/package.html -text
@@ -213,6 +238,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/BotanicNameDefaultCac
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/IIdentifiableEntityCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/INameCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/INomenclaturalAuthorCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/INonViralNameCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/NameCacheStrategyBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/NonViralNameDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/PersonDefaultCacheStrategy.java -text
@@ -220,13 +246,17 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/TeamDefaultCacheStrat
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/ZooNameDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/StringNotParsableException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/UnknownCdmTypeException.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/ITaxonNameParser.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TaxonNameParserBotanicalNameImpl.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/INonViralNameParser.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImpl.java -text
+cdmlib-model/src/main/resources/log4j.properties -text
 cdmlib-model/src/main/resources/terms/Continent.csv -text
 cdmlib-model/src/main/resources/terms/DerivationEventType.csv -text
 cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/Language.csv -text
+cdmlib-model/src/main/resources/terms/MarkerType.csv -text
 cdmlib-model/src/main/resources/terms/NameRelationshipType.csv -text
+cdmlib-model/src/main/resources/terms/NamedAreaType.csv -text
+cdmlib-model/src/main/resources/terms/NomenclaturalCode.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text
 cdmlib-model/src/main/resources/terms/README.TXT -text
 cdmlib-model/src/main/resources/terms/Rank.csv -text
@@ -257,22 +287,30 @@ cdmlib-model/src/site/resources/images/uml/package_overview.png -text
 cdmlib-model/src/site/site.xml -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/DatabaseInitialiser.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/AnnotationTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefinedTermBaseTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabularyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermVocabularyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/DefaultVocabularyStoreTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/TermLoaderTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/TextDataTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BotanicalNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NonViralNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/RankTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/TaxonNameBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonBaseTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonComparatorTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/BotanicNameCacheStrategyTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/TaxonNameParserBotanicalNameImplTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/BotanicNameCacheStrategyTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/ZoologicalNameCacheStrategyTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImplTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestModel.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestSpecimen.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestNameCacheStrategies.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestTaxonNameParserBotanicalNameImpl.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
@@ -287,11 +325,14 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmTermInitializer.ja
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DataSourceNotFoundException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DatabaseTypeEnum.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DbSchemaValidation.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/H2Mode.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/ICdmDataSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/LocalH2.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/LocalHsqldb.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/VocabularyStoreImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/DatabaseTypeBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/Db2DatabaseType.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/H2DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/HSqlDbDatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/IDatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/MySQLDatabaseType.java -text
@@ -301,11 +342,6 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/PostgreSQLDatab
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2000DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2005DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SybaseDatabaseType.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/AgentDaoImpl.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/CdmEntityDaoBase.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/CdmGenericDaoImpl.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/DaoBase.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/DefinedTermDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IAgentDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ICdmEntityDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ICdmGenericDao.java -text
@@ -313,26 +349,34 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IDefine
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IIdentifiableDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ITermVocabularyDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ITitledDao.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IdentifiableDaoBase.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/TermVocabularyDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/AgentDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmGenericDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DaoBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DefinedTermDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/IdentifiableDaoBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/TermVocabularyDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TaxonNameDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/reference/ReferenceDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/ITaxonNameDao.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/TaxonNameDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/IReferenceDao.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/ReferenceDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/TaxonDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/fetch/CdmFetch.java -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
+cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/h2-datasource.xml -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/hsql-datasource.xml -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/persistence.xml -text
 cdmlib-persistence/src/main/resources/log4j.properties -text
 cdmlib-persistence/src/site/site.xml -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/CdmDataSourceTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/DatabaseEnumTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/CdmEntityDaoBaseTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/DaoBaseTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/DefinedTermDaoImplTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/IdentifiableDaoBaseTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/taxon/TaxonDaoHibernateImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBaseTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBaseTestClass.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DaoBaseTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DefinedTermDaoImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/IdentifiableDaoBaseTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestPersistence.java -text
@@ -344,6 +388,8 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/jdbc-datasource.xml -text
 cdmlib-remote/LICENSE.TXT -text
 cdmlib-remote/README.TXT -text
+cdmlib-remote/ide/eclipse/cdmlib-remote[!!-~]-[!!-~]jetty[!!-~]run[!!-~]\[debug\].launch -text
+cdmlib-remote/ide/eclipse/cdmlib-remote[!!-~]-[!!-~]remote[!!-~]debug.launch -text
 cdmlib-remote/pom.xml -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathFilter.java -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathMatcher.java -text
@@ -360,8 +406,9 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/IBaseSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/IReferenceSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/IdentifiedString.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/InteractionFeatureSTO.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/LocalisedTermTO.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaInstanceSTO.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/LocalisedTermSTO.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaRepresenationPartSTO.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaRepresentationSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/NameRelationshipTO.java -text
@@ -383,9 +430,12 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TaxonSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TaxonTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TreeNode.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/AssemblerBase.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/LocalisedTermAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/MediaAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/NameAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/ReferenceAssembler.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/SpecimenAssembler.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/SpecimenTypeDesignationAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/TaxonAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/package.html -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/CdmObjectNonExisting.java -text
@@ -413,6 +463,8 @@ cdmlib-services/LICENSE.TXT -text
 cdmlib-services/README.TXT -text
 cdmlib-services/pom.xml -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationController.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationDefaultConfiguration.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/ICdmApplicationConfiguration.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSaveFileSystemXmlApplicationContext.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSaveGenericApplicationContext.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSavePathMatchingResourcePatternResolver.java -text
@@ -434,12 +486,15 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonServiceImpl.java
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TermServiceImpl.java -text
 cdmlib-services/src/main/resources/eu/etaxonomy/cdm/services.xml -text
 cdmlib-services/src/site/site.xml -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest2.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TermServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestService.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestTaxonFunction.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/CreateDataTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/CreateDataTestNoUnit.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/TermLoaderIntegrationTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
@@ -486,6 +541,7 @@ eclipse-plugin/hibernate-annotations.jar -text
 eclipse-plugin/hibernate-commons-annotations.jar -text
 eclipse-plugin/hibernate-validator.jar -text
 eclipse-plugin/hibernate3.jar -text
+eclipse-plugin/hibernate3src.zip -text
 eclipse-plugin/hsqldb.jar -text
 eclipse-plugin/javassist.jar -text
 eclipse-plugin/jaxb-api.jar -text
@@ -497,6 +553,7 @@ eclipse-plugin/jta.jar -text
 eclipse-plugin/jtds-1.2.2.jar -text
 eclipse-plugin/junit-4.4.jar -text
 eclipse-plugin/log4j-1.2.14.jar -text
+eclipse-plugin/log4j-1.2.14src.zip -text
 eclipse-plugin/msbase-2000.3.jar -text
 eclipse-plugin/mssqlserver-2000.3.jar -text
 eclipse-plugin/msutil-2000.3.jar -text
@@ -530,11 +587,6 @@ eclipse-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
 eclipse-updateSite/index.html -text
 eclipse-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
 eclipse-updateSite/site.xml -text
-imports/pom.xml -text
-imports/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImportActivator.java -text
-imports/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelSources.java -text
-imports/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmDestinations.java -text
-imports/src/main/resources/log4j.properties -text
 libraryTesterApplication/.classpath -text
 libraryTesterApplication/.project -text
 libraryTesterApplication/cdmResources/applicationContext.xml -text
@@ -545,10 +597,6 @@ libraryTesterApplication/lib/aopalliance-1.0.jar -text
 libraryTesterApplication/lib/asm-attrs.jar -text
 libraryTesterApplication/lib/asm.jar -text
 libraryTesterApplication/lib/aspectjrt-1.5.2a.jar -text
-libraryTesterApplication/lib/cdmlib-commons-0.4.7.jar -text
-libraryTesterApplication/lib/cdmlib-model-0.4.7.jar -text
-libraryTesterApplication/lib/cdmlib-persistence-0.4.7.jar -text
-libraryTesterApplication/lib/cdmlib-services-0.4.7.jar -text
 libraryTesterApplication/lib/cglib-2.1.3.jar -text
 libraryTesterApplication/lib/commons-collections-2.1.1.jar -text
 libraryTesterApplication/lib/commons-logging-1.0.4.jar -text
@@ -586,6 +634,8 @@ libraryTesterApplication/lib/spring-test-2.5.jar -text
 libraryTesterApplication/lib/spring-tx-2.5.jar -text
 libraryTesterApplication/lib/xercesImpl.jar -text
 libraryTesterApplication/lib/xml-apis.jar -text
+libraryTesterApplication/src/CdmDestinations.java -text
+libraryTesterApplication/src/Profiling.java -text
 libraryTesterApplication/src/testJar/TestJarMain.java -text
 musiclib-hibernatetest/listAnnotatedClasses.py -text
 musiclib-hibernatetest/pom.xml -text