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improve logging and change signature
[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 1861093a78eab7337aa64acd040cae41c6b59cbb..f780264379a8410c78b21dc18659d588e7dbdc17 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -7,6 +7,7 @@ cdmlib-commons/pom.xml -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/AbstractStringComparator.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/AccountStore.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/CdmUtils.java -text
+cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/DOI.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/DocUtils.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/DoubleResult.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/ExcelUtils.java -text
@@ -16,7 +17,9 @@ cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/ResultWrapper.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/StreamUtils.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/Tree.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/TreeNode.java -text
+cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/UTF8.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/UriUtils.java -text
+cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/UrlUtf8Coder.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/XmlHelp.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/media/AudioInfo.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/media/ImageInfo.java -text
@@ -32,6 +35,7 @@ cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/monitor/SubProgressMonitor.
 cdmlib-commons/src/main/resources/MUST-EXIST.txt -text
 cdmlib-commons/src/main/resources/log4j.properties -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/CdmUtilsTest.java -text
+cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/DoiTest.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/GeneralParserTest.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/UriUtilsTest.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/UuidGenerator.java -text
@@ -47,6 +51,10 @@ cdmlib-ext/pom.xml -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciServiceWrapper.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/IBciServiceWrapper.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQuery.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryGenerator.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapper.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseResponseSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/SchemaAdapterBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/ServiceWrapperBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/dc/DublinCoreSchemaAdapter.java -text
@@ -56,6 +64,7 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/geo/GeoServiceArea.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/geo/GeoServiceAreaAnnotatedMapping.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/geo/IEditGeoService.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/geo/IGeoServiceAreaMapping.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/geo/ShpAttributesToNamedAreaMapper.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IIpniService.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IIpniServiceConfigurator.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniService.java -text
@@ -71,6 +80,7 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/scratchpads/ScratchpadsService.jav
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapper.java -text
 cdmlib-ext/src/main/resources/eu/etaxonomy/cdm/ext/geo/mapServices_v10.xsd -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/bci/BciServiceTest.java -text
+cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/EditGeoServiceTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/GeoServiceAreaTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceTest.java -text
@@ -78,10 +88,7 @@ cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapper
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-ext/src/test/resources/dbscripts/001-cdm.h2.sql -text
-cdmlib-ext/src/test/resources/eu/etaxonomy/cdm.datasources.xml -text
 cdmlib-ext/src/test/resources/eu/etaxonomy/cdm/applicationContext-test.xml -text
-cdmlib-ext/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
-cdmlib-ext/src/test/resources/eu/etaxonomy/cdm/ext/dataset.dtd -text
 cdmlib-ext/src/test/resources/log4j.properties -text
 cdmlib-ext/src/test/resources/unitils.properties -text
 cdmlib-io/LICENSE.TXT -text
@@ -89,65 +96,7 @@ cdmlib-io/README.TXT -text
 cdmlib-io/pom.xml -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/api/application/CdmIoApplicationController.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTransformer.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmBooleanMapper.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmOneToManyMapper.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmStringMapper.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmUriMapper.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelAuthorImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelAuthorTeamImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelCommonNamesImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelFactsImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelImportBase.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelImportConfigurator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelImportState.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelNameFactsImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelNameStatusImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelOccurrenceImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelOccurrenceSourceImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelRefDetailImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelReferenceImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonNameImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonNameRelationImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonRelationImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTypesImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelUserImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelWebMarkerCategoryImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelWebMarkerImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelAuthorImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelAuthorTeamImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelCommonNamesImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelFactsImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelGeneralImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelNameFactsImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelNameStatusImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelOccurrenceImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelOccurrenceSourceImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelRefDetailImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelReferenceImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTaxonImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTaxonNameImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTaxonNameRelationImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTaxonRelationImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelTypesImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelUserImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelWebMarkerCategoryImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelWebMarkerImportValidator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelAuthorExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelAuthorTeamExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelClassificationExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelExportBase.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelExportConfigurator.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelExportState.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelFactExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelNameRelationExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelReferenceExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonNameExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonRelationExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/mapper/FactCategoryMapper.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/mapper/RefDetailMapper.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/mapper/TeamOrPersonMapper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/package.info -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/CacheUpdater.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/CacheUpdaterConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/CdmApplicationAwareDefaultExport.java -text
@@ -195,6 +144,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ResultSetPartitioner.java -te
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ResultSetProxy.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/Source.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/SourceConnectionException.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/TdwgAreaProvider.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/XmlExportConfiguratorBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/XmlExportState.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/XmlImportBase.java -text
@@ -256,6 +206,11 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IXmlMapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/InputTransformerBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/MultipleAttributeMapperBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/UndefinedTransformerMethodException.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/berlinModel/CdmBooleanMapper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/berlinModel/CdmOneToManyMapper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/berlinModel/CdmStringMapper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/berlinModel/CdmUriMapper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/berlinModel/package.info -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/out/CdmDbExportMapping.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/out/CollectionExportMapping.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/out/CreatedAndNotesMapper.java -text
@@ -683,6 +638,8 @@ cdmlib-model/LICENSE.TXT -text
 cdmlib-model/README.TXT -text
 cdmlib-model/pom.xml -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/aspectj/PropertyChangeAspect.aj -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/DOIUserType.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/EnumUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/HibernateProxyHelper.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/PartialUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/URIUserType.java -text
@@ -694,6 +651,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/ClassInfoBridge.jav
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/DateTimeBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/DefinedTermBaseClassBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/DescriptionBaseClassBridge.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/DoiBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/GroupByTaxonClassBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/IdFieldOptions.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/MultilanguageTextFieldBridge.java -text
@@ -701,6 +659,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/NotNullAwareIdBridg
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/PartialBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/SortFieldOptions.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/StripHtmlBridge.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/TaxonRelationshipClassBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/UuidBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmAccessor.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmAccessorFactoryImpl.java -text
@@ -724,7 +683,6 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/AgentBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Contact.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/INomenclaturalAuthor.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Institution.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/InstitutionType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/InstitutionalMembership.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Person.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Team.java -text
@@ -735,22 +693,23 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotatableEntity.java
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Annotation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotationType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmMetaData.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Credit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefaultTermInitializer.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTermBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DescriptionElementSource.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/EnumeratedTermVoc.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/EventBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Extension.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ExtensionType.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Figure.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/GrantedAuthorityImpl.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Group.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IAnnotatableEntity.java -text svneol=unset#text/plain
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ICdmBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IDefinedTerm.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IEnumTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IIdentifiableEntity.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IKeyTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ILoadableTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IMultiLanguageText.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IMultiLanguageTextHolder.java -text
@@ -758,7 +717,9 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IOriginalSource.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IParsable.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IReferencedEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IRelated.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ISimpleTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ISourceable.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ITreeNode.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IVersionableEntity.java -text svneol=unset#text/plain
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IdentifiableEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IdentifiableSource.java -text
@@ -776,6 +737,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/NoDefinedTermClassExcep
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OriginalSourceBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OriginalSourceType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/PersistentMultiLanguageText.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/PersistentMultiLanguageTextType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ReferencedEntityBase.java -text
@@ -784,6 +746,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipTermBase.ja
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Representation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermLanguageComparator.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TimePeriod.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/User.java -text
@@ -802,6 +765,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CategoricalData.ja
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CommonTaxonName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionElementBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionElementSource.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptiveSystemRole.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Distribution.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Feature.java -text
@@ -813,7 +777,6 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IndividualsAssocia
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/KeyStatement.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MeasurementUnit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MediaKey.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Modifier.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MultiAccessKey.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/NaturalLanguageTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKey.java -text
@@ -821,10 +784,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKeyNode.
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/QuantitativeData.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Scope.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Sex.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/SpecimenDescription.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Stage.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/State.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/StateData.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/StatisticalMeasure.java -text
@@ -837,14 +797,13 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/TextFormat.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/WorkingSet.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/package.html -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/Continent.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/Country.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/NamedArea.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/NamedAreaLevel.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/NamedAreaType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/Point.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/ReferenceSystem.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/TdwgArea.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/WaterbodyOrCountry.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/TdwgArea_Old.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/AudioFile.java -text
@@ -857,15 +816,22 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaRepresentation.java
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaRepresentationPart.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaUtils.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MovieFile.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/ReferencedMediaBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/Rights.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/RightsTerm.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/RightsType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/package-info.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/CdmMetaData.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/CdmPreference.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/PreferencePredicate.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/PreferenceSubject.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Amplification.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Cloning.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaSample.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/GenBankAccession.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Locus.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/PhylogeneticTree.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Primer.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Sequence.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SequenceDirection.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SequenceString.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SingleRead.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/BacterialName.java -text
@@ -884,6 +850,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatus.java
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatusType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NonViralName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/Rank.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/RankClass.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignationStatus.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/TaxonNameBase.java -text
@@ -898,17 +865,14 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Collection.java -te
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEventType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnit.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnitBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationEvent.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationModifier.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/FieldObservation.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Fossil.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/FieldUnit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/GatheringEvent.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/LivingBeing.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Observation.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/MaterialOrMethodEvent.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/MediaSpecimen.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/PreservationMethod.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Specimen.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/SpecimenOrObservationBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/SpecimenOrObservationType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/overview.html -text
@@ -930,7 +894,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IProceedings.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IPublicationBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IReference.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IReport.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/ISectionBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/ISection.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IThesis.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IVolumeReference.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IWebPage.java -text
@@ -943,7 +907,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/AlternativeTreeRoot.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/Classification.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/ITaxonNodeComparator.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/ITreeNode.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/ITaxonTreeNode.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/IllegalAncestryException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/Synonym.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/SynonymRelationship.java -text
@@ -981,6 +945,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/agent/TeamDefaultCach
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/common/IIdentifiableEntityCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/common/IdentifiableEntityDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/common/TermDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/common/TimePeriodPartialFormatter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/description/PolytomousKeyDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/description/SpecimenDescriptionDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/description/TaxonDescriptionDefaultCacheStrategy.java -text
@@ -1005,7 +970,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/IReferenceB
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/InRefDefaultCacheStrategyBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/JournalDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/NomRefDefaultCacheStrategyBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/ReferenceBaseDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/ReferenceDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/ThesisDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/taxon/TaxonBaseDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/StringNotParsableException.java -text
@@ -1034,6 +999,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserIm
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/ParserProblem.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/SpecimenTypeParser.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TaxonNameParserHistory.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TimePeriodParser.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/location/CoordinateConverter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/Level2.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/Level3.java -text
@@ -1069,8 +1035,11 @@ cdmlib-model/src/main/resources/log4j.properties -text
 cdmlib-model/src/main/resources/terms/AbsenceTerm.csv -text
 cdmlib-model/src/main/resources/terms/AnnotationType.csv -text
 cdmlib-model/src/main/resources/terms/Continent.csv -text
+cdmlib-model/src/main/resources/terms/Country.csv -text
 cdmlib-model/src/main/resources/terms/DerivationEventType.csv -text
 cdmlib-model/src/main/resources/terms/DeterminationModifier.csv -text
+cdmlib-model/src/main/resources/terms/DnaMarkerChloroplast.csv -text
+cdmlib-model/src/main/resources/terms/DnaMarkerEukaryote.csv -text
 cdmlib-model/src/main/resources/terms/ExtensionType.csv -text
 cdmlib-model/src/main/resources/terms/Feature.csv -text
 cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text
@@ -1088,14 +1057,16 @@ cdmlib-model/src/main/resources/terms/NamedAreaType.csv -text
 cdmlib-model/src/main/resources/terms/NaturalLanguageTerm.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalCode.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text
+cdmlib-model/src/main/resources/terms/PlantKindOfUnit.csv -text
 cdmlib-model/src/main/resources/terms/PresenceTerm.csv -text
 cdmlib-model/src/main/resources/terms/PreservationMethod.csv -text
 cdmlib-model/src/main/resources/terms/README.TXT -text
 cdmlib-model/src/main/resources/terms/Rank.csv -text
 cdmlib-model/src/main/resources/terms/ReferenceSystem.csv -text
-cdmlib-model/src/main/resources/terms/RightsTerm.csv -text
+cdmlib-model/src/main/resources/terms/RightsType.csv -text
 cdmlib-model/src/main/resources/terms/Scope.csv -text
 cdmlib-model/src/main/resources/terms/Sex.csv -text
+cdmlib-model/src/main/resources/terms/SpecimenKindOfUnit.csv -text
 cdmlib-model/src/main/resources/terms/SpecimenTypeDesignationStatus.csv -text
 cdmlib-model/src/main/resources/terms/Stage.csv -text
 cdmlib-model/src/main/resources/terms/State.csv -text
@@ -1105,7 +1076,7 @@ cdmlib-model/src/main/resources/terms/TaxonRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/TdwgArea.csv -text
 cdmlib-model/src/main/resources/terms/TextFormat.csv -text
 cdmlib-model/src/main/resources/terms/UndefinedLanguage.csv -text
-cdmlib-model/src/main/resources/terms/WaterbodyOrCountry.csv -text
+cdmlib-model/src/main/resources/terms/Waterbody.csv -text
 cdmlib-model/src/main/resources/update/update_for_security.sql -text
 cdmlib-model/src/main/resources/update/update_r2.1.2.2_r2.4.1.2.mysql.sql -text
 cdmlib-model/src/main/resources/update/update_term_r2.4.2.1-r2.4.2.2.mysql.sql -text
@@ -1113,12 +1084,10 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -tex
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/datagenerator/TaxonGenerator.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/DatabaseInitialiser.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/AgentValidationTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/InstitutionTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/InstitutionalMembershipTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/TeamTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/AnnotationTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmBaseTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmMetaDataTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefaultTermInitializerTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefinedTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/ExtensionTypeTest.java -text
@@ -1130,6 +1099,8 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabularyTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OriginalSourceTypeTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermVocabularyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TimePeriodTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/DefaultTermInitializerTest.java -text
@@ -1146,6 +1117,9 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/PointTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/TdwgAreaTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/media/MediaTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/media/MediaUtilsTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/metadata/CdmMetaDataTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/metadata/CdmPreferenceTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/metadata/PreferenceSubjectTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/molecular/MolecularTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BacterialNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BotanicalNameTest.java -text
@@ -1190,6 +1164,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/merge/DefaultMergeStrategyT
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/NameTypeParserTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImplTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/ParserProblemTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/TimePeriodParserTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/location/CoordinateConverterTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestFullReferenceParser.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestModel.java -text
@@ -1244,10 +1219,13 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2000Da
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2005DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2008DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SybaseDatabaseType.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/AuditedSchemaUpdaterStepBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/CdmUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ClassChanger.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ColumnAdder.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ColumnNameChanger.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ColumnRemover.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ColumnTypeChanger.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/DatabaseTypeNotSupportedException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ISchemaUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ISchemaUpdaterStep.java -text
@@ -1259,18 +1237,21 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/MnTableCreator
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SchemaUpdaterBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SchemaUpdaterStepBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SimpleSchemaUpdaterStep.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SingleTermRemover.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SingleTermUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SortIndexUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TableCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TableDroper.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TableNameChanger.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TermMover.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TermRepresentationUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TermUpdaterBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TreeIndexUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UniqueIndexDropper.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UpdaterBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/VocabularyCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/permissions/PermissionsUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/SchemaUpdater_24_25.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/SortIndexUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/TermUpdater_24_25.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/FeatureNodeTreeColumnUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/PolytomousKeyDataMover.java -text
@@ -1278,7 +1259,6 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/SchemaU
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/SequenceTableCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/TermUpdater_25_30.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/LanguageLabelUpdater.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/SchemaUpdater_301_31.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/SchemaUpdater_30_301.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_30_31.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_311_312.java -text
@@ -1286,20 +1266,15 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpd
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_313_314.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_314_315.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_31_311.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AbstractBeanInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AnnotationTypeAutoInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AutoPropertyInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/GatheringEventLocationAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/RankClassUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SchemaUpdater_31_33.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SpecimenMediaMoverUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/TermUpdater_31_33.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/TermVocabularyRepresentationUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IAlternativeSpellingSuggestionParser.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IBeanInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IMethodCache.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/MarkerTypeAutoInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/MediaAutoInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/MethodCacheImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/QueryParseException.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/TermBaseAutoInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/TitleCacheAutoInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/TypeDesignationAutoInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/agent/IAgentDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/AuditEventSort.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IAnnotatableDao.java -text
@@ -1317,6 +1292,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ILsidAu
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IMarkerDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IOrderedTermVocabularyDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IOriginalSourceDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IPreferenceDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IReferencedEntityDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IRepresentationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ISearchableDao.java -text
@@ -1355,6 +1331,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/comm
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/MarkerDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/OrderedTermVocabularyDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/OriginalSourceDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/PreferenceDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/ReferencedEntityDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/RepresentationDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/TermVocabularyDaoImpl.java -text
@@ -1386,6 +1363,18 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxo
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/AbstractBeanInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/AdvancedBeanInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/AnnotationTypeAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/AutoPropertyInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/BeanInitNode.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/GatheringEventLocationAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/IBeanInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/MarkerTypeAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/MediaAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/TermBaseAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/TitleAndNameCacheAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/TypeDesignationAutoInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationPartDao.java -text
@@ -1423,6 +1412,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permissi
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/IGrantedAuthorityConverter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/Operation.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/Role.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/UnanimousBasedUnrevokable.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/CdmPermissionVoter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/DescriptionBaseVoter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/DescriptionElementVoter.java -text
@@ -1487,6 +1477,7 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/comm
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DefinedTermDaoImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/GroupDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/IdentifiableDaoBaseTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/PreferenceDaoTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/TermVocabularyDaoImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/UserDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/DescriptionDaoHibernateImplTest.java -text
@@ -1525,11 +1516,11 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/suite/TestsShouldNotFailI
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/suite/TestsShouldNotFailInSuite_2.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/suite/TestsShouldNotFailInSuite_3.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/unitils/CleanSweepInsertLoadStrategy.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/unitils/DdlCreator.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/unitils/FlatFullXmlWriter.java -text
-cdmlib-persistence/src/test/resources/META-INF/persistence.xml -text
+cdmlib-persistence/src/test/resources/META-INF/persistence_old.xml -text
 cdmlib-persistence/src/test/resources/c3p0-config.xml -text
 cdmlib-persistence/src/test/resources/dbscripts/001-cdm.h2.sql -text
-cdmlib-persistence/src/test/resources/dbscripts/hibernate.cfg.xml -text
 cdmlib-persistence/src/test/resources/dbscripts/hibernate.properties -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/applicationContext-securityTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/applicationContext-test.common.xml -text
@@ -1540,7 +1531,6 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/database/ClearDBDataSet.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/database/ClearDB_with_Terms_DataSet.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/database/TermsDataSet-with_auditing_info.xml -text
-cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/database/TermsDataSet.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/BeanInitializerIntegration.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/FreeTextSearchIntegration.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/agent/AgentDaoImplTest.testDelete-result.xml -text
@@ -1564,6 +1554,7 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DefinedTermDaoImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/common/GroupDaoHibernateImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/common/IdentifiableDaoBaseTest.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/common/PreferenceDaoTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/common/TermVocabularyDaoImplTest.testListVocabularyEmpty.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/common/TermVocabularyDaoImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/common/UserDaoHibernateImplTest.xml -text
@@ -1583,6 +1574,7 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartDaoImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/media/OregonScientificDS6639-DSC_0307-small.jpg -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/media/OregonScientificDS6639-DSC_0307-small.tif -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/MolecularHibernateImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/name/Blank.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TaxonNameDaoHibernateImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TypeDesignationDaoHibernateImplTest.testSaveTypeDesignations-result.xml -text
@@ -1594,6 +1586,7 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/reference/ReferenceDaoHibernateImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testAddChild-result.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testDelete-result.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testDelete-result1.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testFind.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testFindDeleted.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml -text
@@ -1602,6 +1595,7 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDaoTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.testOnSaveOrUpdateAgents-result.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.testOnSaveOrUpdateNames-result.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.testOnSaveOrUpdateReferences-result.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/hibernate/CdmDeleteListenerTest.testOnDelete-result.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/hibernate/CdmDeleteListenerTest.xml -text
@@ -1626,7 +1620,11 @@ cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/XMLHelper.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/XmlEntityFactoryBase.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/IPublishOutputModule.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/PublishOutputModuleBase.java -text
+cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/mediawiki/Cdm2MediawikiExporter.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/mediawiki/MediawikiOutputModule.java -text
+cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/mediawiki/WikiBot.java -text
+cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/mediawiki/WikiFile.java -text
+cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/mediawiki/WikiPage.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/odf/DocumentCreator.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/odf/IStyleNames.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/odf/OdfOutputModule.java -text
@@ -1653,6 +1651,7 @@ cdmlib-print/src/site/site.xml -text
 cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/PubTest.java -text
 cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/PublisherTest.java -text
 cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/TransformatorTest.java -text
+cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/out/mediawiki/Cdm2MediawikiExporterTest.java -text
 cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/out/odf/OdfOutputModuleTest.java -text
 cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/out/pdf/PdfOutputModuleTest.java -text
 cdmlib-print/src/test/resources/20100719-1939-xml_export.xml -text
@@ -1993,7 +1992,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/IConversationEna
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacade.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategy.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeConfigurator.java -text
-cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldObservationCacheStrategy.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldUnitCacheStrategy.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeNotSupportedException.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/MethodNotSupportedByDerivedUnitTypeException.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/AbstractCategoricalDescriptionBuilder.java -text
@@ -2044,6 +2043,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/INaturalLanguageTextD
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IOccurrenceService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IPolytomousKeyNodeService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IPolytomousKeyService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IPreferenceService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IReferenceService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IStatisticsService.java -text
@@ -2066,6 +2066,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGenera
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/OccurrenceServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/PolytomousKeyNodeServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/PreferenceServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ReferenceServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ServiceBase.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ServiceImpl.java -text
@@ -2086,6 +2087,8 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IdentifiableSe
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IdentifiableServiceConfiguratorImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/MatchingTaxonConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/NameDeletionConfigurator.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/SynonymDeletionConfigurator.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonBaseDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonNodeDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TermDeletionConfigurator.java -text
@@ -2115,6 +2118,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/AbstractPa
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/DefaultPagerImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/StringLabelPagerImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/CdmMassIndexer.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/DocIdBitSetPrinter.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/DocumentSearchResult.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/ICdmMassIndexer.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/ILuceneIndexToolProvider.java -text
@@ -2152,16 +2156,18 @@ cdmlib-services/src/main/resources/wsdl/LSIDDataServiceSOAPBindings.wsdl -text
 cdmlib-services/src/main/resources/wsdl/LSIDPortTypes.wsdl -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/application/FirstDataInserterTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyTest.java -text
-cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldObservationCacheStrategyTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldUnitCacheStrategyTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/ClassificationServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/CommonServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/DescriptionServiceImplTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/FeatureNodeServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentifiableServiceBaseTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentificationKeyGeneratorTTT.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGeneratorTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImplTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PreferenceServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/SecurityTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/SecurityWithTransaction.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/StatisticsServiceImplTest.java -text
@@ -2178,6 +2184,7 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDMetadataServ
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDRegistryTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/pager/PagerTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/scripts/FixMultipleTextDataInImageGalleries.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/example/ApplicationExample.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/ConcurrentSessionTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestAgentService.java -text
@@ -2187,7 +2194,6 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestLocationServiceImpl.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestService.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestTaxonFunction.java -text
-cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/hibernate.cfg.xml -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/CreateDataTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/CreateDataTestNoUnit.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/TermLoaderIntegrationTest.java -text
@@ -2210,6 +2216,7 @@ cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/facade/DerivedUnitFacade
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/BlankDataSet.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/ClassificationServiceImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/CommonServiceImplTest.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/FeatureNodeServiceImplTest-indexing.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/IdentifiableServiceBaseTest.testUpdateTitleCache-result.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/IdentifiableServiceBaseTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/MediaDaoImplTest.xml -text
@@ -2217,7 +2224,9 @@ cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/NameServiceImplT
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/OregonScientificDS6639-DSC_0307-small.jpg -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/OregonScientificDS6639-DSC_0307-small.tif -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImplTest.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/PreferenceServiceImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/SecurityTest.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImplTest-indexing.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.testDeleteSynonym.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.testInferredSynonyms.xml -text