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[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 6dfd0e17a325de658d4083efaa4a1cdb8a1120cb..d9c674b6a0237fc28b13de0a3a87e786afcc7a50 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -5,6 +5,7 @@ cdmlib-commons/LICENSE.TXT -text
 cdmlib-commons/README.TXT -text
 cdmlib-commons/pom.xml -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/CdmUtils.java -text
+cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/UuidGenerator.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/XmlHelp.java -text
 cdmlib-commons/src/main/resources/MUST-EXIST.txt -text
 cdmlib-commons/src/main/resources/log4j.properties -text
@@ -19,14 +20,13 @@ cdmlib-io/pom.xml -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelAuthorIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelFactsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImportActivator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelReferenceIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonNameIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTransformer.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/ImportHelper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/MapWrapper.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/test/BerlinModelSources.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/source/Source.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/source/SourceConnectionException.java -text
 cdmlib-io/src/main/resources/log4j.properties -text
@@ -39,11 +39,13 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/datagenerator/TaxonGenerator.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Address.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Agent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Contact.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/INomenclaturalAuthor.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Institution.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/InstitutionType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/InstitutionalMembership.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Person.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Team.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/TeamOrPersonBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotatableEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Annotation.java -text
@@ -54,8 +56,9 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/EventBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Extension.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ExtensionType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Figure.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IDefTerm.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ICdmBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IEvent.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ILoadableTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IMediaDocumented.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IOriginalSource.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IReferencedEntity.java -text
@@ -91,6 +94,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/WrongTermTypeException.
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/DefaultVocabularyStore.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/IVocabularyStore.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermLoader.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermNotFoundException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/AbsenceTerm.java -text
@@ -129,11 +133,13 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/NamedAreaType.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/Point.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/ReferenceSystem.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/WaterbodyOrCountry.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaSample.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/GenBankAccession.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Locus.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/PhylogeneticTree.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Sequence.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/BacterialName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/BotanicalName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/CultivarPlantName.java -text
@@ -152,6 +158,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/TaxonNameBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/TypeDesignationStatus.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/ViralName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/ZoologicalName.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Collection.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEventType.java -text
@@ -166,7 +173,8 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Observation.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/PreservationMethod.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Specimen.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/SpecimenOrObservationBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/package.html -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/package.html -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/overview.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Article.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/BibtexEntryType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/BibtexReference.java -text
@@ -192,6 +200,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/SectionBase.java -te
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/StrictReferenceBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Thesis.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/WebPage.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/Synonym.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/SynonymRelationship.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/SynonymRelationshipType.java -text
@@ -199,22 +208,28 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/Taxon.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationship.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationshipType.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/View.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/BotanicNameDefaultCacheStrategy.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/INameCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/IStrategy.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/ITaxonNameParser.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/NameCacheStrategyBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/NonViralNameDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/StrategyBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/TaxonNameParserBotanicalNameImpl.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/ZooNameDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/BotanicNameDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/IIdentifiableEntityCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/INameCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/INomenclaturalAuthorCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/NameCacheStrategyBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/NonViralNameDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/PersonDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/TeamDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/ZooNameDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/StringNotParsableException.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/UnknownRankException.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/UnknownCdmTypeException.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/ITaxonNameParser.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TaxonNameParserBotanicalNameImpl.java -text
 cdmlib-model/src/main/resources/terms/Continent.csv -text
 cdmlib-model/src/main/resources/terms/DerivationEventType.csv -text
 cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/Language.csv -text
+cdmlib-model/src/main/resources/terms/MarkerType.csv -text
 cdmlib-model/src/main/resources/terms/NameRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text
 cdmlib-model/src/main/resources/terms/README.TXT -text
@@ -246,20 +261,23 @@ cdmlib-model/src/site/resources/images/uml/package_overview.png -text
 cdmlib-model/src/site/site.xml -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/DatabaseInitialiser.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/AnnotationTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefinedTermBaseTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabularyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermVocabularyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/DefaultVocabularyStoreTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/TermLoaderTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/TextDataTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BotanicalNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NonViralNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/RankTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/TaxonNameBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/BotanicNameCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/TaxonNameParserBotanicalNameImplTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestModel.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestTaxonNameParserBotanicalNameImpl.java -text
@@ -271,9 +289,12 @@ cdmlib-persistence/README.TXT -text
 cdmlib-persistence/pom.xml -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationUtils.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmPersistentDataSource.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmTermInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DataSourceNotFoundException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DatabaseTypeEnum.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DbSchemaValidation.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/ICdmDataSource.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/LocalHsqldb.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/VocabularyStoreImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/DatabaseTypeBase.java -text
@@ -287,11 +308,6 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/PostgreSQLDatab
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2000DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2005DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SybaseDatabaseType.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/AgentDaoImpl.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/CdmEntityDaoBase.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/CdmGenericDaoImpl.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/DaoBase.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/DefinedTermDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IAgentDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ICdmEntityDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ICdmGenericDao.java -text
@@ -299,14 +315,19 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IDefine
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IIdentifiableDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ITermVocabularyDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ITitledDao.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IdentifiableDaoBase.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/TermVocabularyDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/AgentDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmGenericDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DaoBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DefinedTermDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/IdentifiableDaoBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/TermVocabularyDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TaxonNameDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/reference/ReferenceDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/ITaxonNameDao.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/TaxonNameDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/IReferenceDao.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/ReferenceDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/TaxonDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/hsql-datasource.xml -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/persistence.xml -text
@@ -314,11 +335,12 @@ cdmlib-persistence/src/main/resources/log4j.properties -text
 cdmlib-persistence/src/site/site.xml -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/CdmDataSourceTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/DatabaseEnumTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/CdmEntityDaoBaseTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/DaoBaseTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/DefinedTermDaoImplTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/IdentifiableDaoBaseTest.java -text
-cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/taxon/TaxonDaoHibernateImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBaseTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBaseTestClass.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DaoBaseTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DefinedTermDaoImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/IdentifiableDaoBaseTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestPersistence.java -text
@@ -330,6 +352,8 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/jdbc-datasource.xml -text
 cdmlib-remote/LICENSE.TXT -text
 cdmlib-remote/README.TXT -text
+cdmlib-remote/ide/eclipse/cdmlib-remote[!!-~]-[!!-~]jetty[!!-~]run[!!-~]\[debug\].launch -text
+cdmlib-remote/ide/eclipse/cdmlib-remote[!!-~]-[!!-~]remote[!!-~]debug.launch -text
 cdmlib-remote/pom.xml -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathFilter.java -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathMatcher.java -text
@@ -400,6 +424,7 @@ cdmlib-services/README.TXT -text
 cdmlib-services/pom.xml -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationController.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSaveFileSystemXmlApplicationContext.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSaveGenericApplicationContext.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSavePathMatchingResourcePatternResolver.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/AgentServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/DatabaseServiceHibernateImpl.java -text
@@ -419,21 +444,39 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonServiceImpl.java
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TermServiceImpl.java -text
 cdmlib-services/src/main/resources/eu/etaxonomy/cdm/services.xml -text
 cdmlib-services/src/site/site.xml -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest2.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TermServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestService.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestTaxonFunction.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/TermLoaderIntegrationTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/applicationContext.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
 cdmlib-services/src/test/resources/log4j.properties -text
+eclipse-feature-sources/build.properties -text
+eclipse-feature-sources/feature.xml -text
 eclipse-feature/.classpath -text
 eclipse-feature/.project -text
 eclipse-feature/build.properties -text
 eclipse-feature/feature.xml -text
+eclipse-plugin-sources/META-INF/MANIFEST.MF -text
+eclipse-plugin-sources/plugin.xml -text
+eclipse-plugin-sources/pom.xml -text
+eclipse-plugin-sources/spring-aop-2.5src.zip -text
+eclipse-plugin-sources/spring-beans-2.5src.zip -text
+eclipse-plugin-sources/spring-context-2.5src.zip -text
+eclipse-plugin-sources/spring-context-support-2.5src.zip -text
+eclipse-plugin-sources/spring-core-2.5src.zip -text
+eclipse-plugin-sources/spring-jdbc-2.5src.zip -text
+eclipse-plugin-sources/spring-orm-2.5src.zip -text
+eclipse-plugin-sources/spring-test-2.5src.zip -text
+eclipse-plugin-sources/spring-tx-2.5src.zip -text
+eclipse-plugin-sources/spring-web-2.5src.zip -text
+eclipse-plugin-sources/spring-webmvc-2.5src.zip -text
 eclipse-plugin/.classpath -text
 eclipse-plugin/.project -text
 eclipse-plugin/META-INF/MANIFEST.MF -text
@@ -444,15 +487,6 @@ eclipse-plugin/asm.jar -text
 eclipse-plugin/aspectjrt-1.5.4.jar -text
 eclipse-plugin/build.properties -text
 eclipse-plugin/build_ant.xml -text
-eclipse-plugin/cdmLibrary-0.4.1.jar -text
-eclipse-plugin/cdmlib-commons-0.4.7-sources.jar -text
-eclipse-plugin/cdmlib-commons-0.4.7.jar -text
-eclipse-plugin/cdmlib-model-0.4.7-sources.jar -text
-eclipse-plugin/cdmlib-model-0.4.7.jar -text
-eclipse-plugin/cdmlib-persistence-0.4.7-sources.jar -text
-eclipse-plugin/cdmlib-persistence-0.4.7.jar -text
-eclipse-plugin/cdmlib-services-0.4.7-sources.jar -text
-eclipse-plugin/cdmlib-services-0.4.7.jar -text
 eclipse-plugin/cglib-2.1.3.jar -text
 eclipse-plugin/commons-collections-2.1.1.jar -text
 eclipse-plugin/commons-logging-1.0.4.jar -text
@@ -483,13 +517,22 @@ eclipse-plugin/plugin.xml -text
 eclipse-plugin/pom.xml -text
 eclipse-plugin/postgresql-8.2-504.jdbc4.jar -text
 eclipse-plugin/spring-2.5.jar -text
+eclipse-plugin/spring-aop-2.5src.zip -text
 eclipse-plugin/spring-beans-2.5.jar -text
+eclipse-plugin/spring-beans-2.5src.zip -text
 eclipse-plugin/spring-context-2.5.jar -text
+eclipse-plugin/spring-context-2.5src.zip -text
+eclipse-plugin/spring-context-support-2.5src.zip -text
 eclipse-plugin/spring-core-2.5.jar -text
+eclipse-plugin/spring-core-2.5src.zip -text
 eclipse-plugin/spring-jdbc-2.5.jar -text
+eclipse-plugin/spring-jdbc-2.5src.zip -text
 eclipse-plugin/spring-orm-2.5.jar -text
+eclipse-plugin/spring-orm-2.5src.zip -text
 eclipse-plugin/spring-test-2.5.jar -text
+eclipse-plugin/spring-test-2.5src.zip -text
 eclipse-plugin/spring-tx-2.5.jar -text
+eclipse-plugin/spring-tx-2.5src.zip -text
 eclipse-plugin/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
 eclipse-plugin/xercesImpl.jar -text
 eclipse-plugin/xml-apis.jar -text
@@ -498,6 +541,11 @@ eclipse-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
 eclipse-updateSite/index.html -text
 eclipse-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
 eclipse-updateSite/site.xml -text
+imports/pom.xml -text
+imports/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImportActivator.java -text
+imports/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelSources.java -text
+imports/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmDestinations.java -text
+imports/src/main/resources/log4j.properties -text
 libraryTesterApplication/.classpath -text
 libraryTesterApplication/.project -text
 libraryTesterApplication/cdmResources/applicationContext.xml -text