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[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 7f23a34a282e7461bf27bc5f2a74d4c8f2c49798..39c4f0f9370c20b628a96b2f97db34b5ad7df87c 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -51,10 +51,6 @@ cdmlib-ext/pom.xml -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciServiceWrapper.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/IBciServiceWrapper.java -text
-cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQuery.java -text
-cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryGenerator.java -text
-cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapper.java -text
-cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseResponseSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/SchemaAdapterBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/ServiceWrapperBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/dc/DublinCoreSchemaAdapter.java -text
@@ -72,6 +68,15 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceAuthorConfigurator
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceConfiguratorBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceNamesConfigurator.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServicePublicationConfigurator.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/OccurenceQuery.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryGenerator.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryServiceWrapper.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/DataSetResponse.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifDataSetProtocol.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifJsonOccurrenceParser.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifQueryGenerator.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifQueryServiceWrapper.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifResponse.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlQuery.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlResponseSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapper.java -text
@@ -80,10 +85,11 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/scratchpads/ScratchpadsService.jav
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapper.java -text
 cdmlib-ext/src/main/resources/eu/etaxonomy/cdm/ext/geo/mapServices_v10.xsd -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/bci/BciServiceTest.java -text
-cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/EditGeoServiceTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/GeoServiceAreaTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceTest.java -text
+cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryServiceWrapperTest.java -text
+cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifQueryServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
@@ -691,6 +697,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/PartialAdapter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/TDWGNamespacePrefixMapper.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/UUIDAdapter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/CdmBaseType.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/ICdmCacher.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Address.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/AgentBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Contact.java -text
@@ -770,6 +777,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/VocabularyEnum.java -te
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/WrongTermTypeException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/ITermInitializer.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/ITermLoader.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/MockCdmCacher.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermLoader.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermNotFoundException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package-info.java -text
@@ -985,6 +993,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/InRefDefaul
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/JournalDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/NomRefDefaultCacheStrategyBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/ReferenceDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/SectionDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/ThesisDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/taxon/TaxonBaseDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/StringNotParsableException.java -text
@@ -1056,11 +1065,13 @@ cdmlib-model/src/main/resources/terms/DnaMarkerChloroplast.csv -text
 cdmlib-model/src/main/resources/terms/DnaMarkerEukaryote.csv -text
 cdmlib-model/src/main/resources/terms/ExtensionType.csv -text
 cdmlib-model/src/main/resources/terms/Feature.csv -text
+cdmlib-model/src/main/resources/terms/FormerCountries -text
 cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/InstitutionType.csv -text
 cdmlib-model/src/main/resources/terms/Language.csv -text
 cdmlib-model/src/main/resources/terms/MarkerType.csv -text
 cdmlib-model/src/main/resources/terms/MeasurementUnit.csv -text
+cdmlib-model/src/main/resources/terms/MediaSpecimenKindOfUnit.csv -text
 cdmlib-model/src/main/resources/terms/Modifier.csv -text
 cdmlib-model/src/main/resources/terms/NameFeature.csv -text
 cdmlib-model/src/main/resources/terms/NameRelationshipType.csv -text
@@ -1071,6 +1082,7 @@ cdmlib-model/src/main/resources/terms/NamedAreaType.csv -text
 cdmlib-model/src/main/resources/terms/NaturalLanguageTerm.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalCode.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text
+cdmlib-model/src/main/resources/terms/NomenclaturalStatusTypeIczn.csv -text
 cdmlib-model/src/main/resources/terms/PlantKindOfUnit.csv -text
 cdmlib-model/src/main/resources/terms/PresenceTerm.csv -text
 cdmlib-model/src/main/resources/terms/PreservationMethod.csv -text
@@ -1162,6 +1174,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/common/TermDefaultCac
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/description/TaxonDescriptionDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/media/MediaDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/BotanicNameCacheStrategyTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/NameCacheStrategyTestBase.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/NonViralNameDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/ZooNameNoMarkerCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/ZoologicalNameCacheStrategyTest.java -text
@@ -1199,7 +1212,13 @@ cdmlib-persistence/LICENSE.TXT -text
 cdmlib-persistence/README.TXT -text
 cdmlib-persistence/pom.xml -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationUtils.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmPersistentSourceUtils.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmPersistentXMLSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmSourceException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/Configuration.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/ICdmPersistentSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/ICdmSource.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSource.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSourceBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmPersistentDataSource.java -text
@@ -1266,6 +1285,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UniqueIndexDro
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UpdaterBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/VocabularyCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/permissions/PermissionsUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/test/ValidateForeignKeys.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/SchemaUpdater_24_25.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/TermUpdater_24_25.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/FeatureNodeTreeColumnUpdater.java -text
@@ -1367,6 +1387,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/desc
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/AmplificationDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/PrimerDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/SequenceDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/HomotypicalGroupDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/NomenclaturalStatusDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TaxonNameDaoHibernateImpl.java -text
@@ -1395,6 +1418,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/Ty
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationPartDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/IAmplificationDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/IPrimerDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/ISequenceDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/IHomotypicalGroupDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/INomenclaturalStatusDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/ITaxonNameDao.java -text
@@ -1406,6 +1432,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/statistics/ISt
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/IClassificationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonNodeDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/LogicFilter.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/TaxonNodeFilter.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/TaxonNodeFilterDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/fetch/CdmFetch.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGenerator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CdmDataChangeEvent.java -text
@@ -1521,6 +1550,7 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/stat
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplBenchmark.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/tmp/TaxonNodeFilterDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDaoTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permission/CdmAuthorityTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permission/CdmPermissionClassTest.java -text
@@ -1615,6 +1645,9 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testFindDeleted.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.testSortindexForJavassist-result.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.testSortindexForJavassist.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.testSortindexForJavassist2-result.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDaoTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.testOnSaveOrUpdateAgents-result.xml -text
@@ -1792,7 +1825,15 @@ cdmlib-remote-webapp/src/main/webapp/xsl/name.xsl -text
 cdmlib-remote-webapp/src/main/webapp/xsl/oai2.xsl -text
 cdmlib-remote-webapp/src/main/webapp/xsl/statistics.xsl -text
 cdmlib-remote-webapp/src/main/webapp/xsl/taxon.xsl -text
-cdmlib-remote-webapp/src/test/java/eu/etaxonomy/AppTest.java -text
+cdmlib-remote-webapp/src/test/java/eu/etaxonomy/cdm/remote/ClassificationIT.java -text
+cdmlib-remote-webapp/src/test/resources/datasources.xml -text
+cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty-http.xml -text
+cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty-https.xml -text
+cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty-ssl.xml -text
+cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty.xml -text
+cdmlib-remote-webapp/src/test/resources/h2/cdmTest.h2.db -text svneol=unset#unset
+cdmlib-remote-webapp/src/test/resources/log4j.properties -text
+cdmlib-remote/.springBeans -text
 cdmlib-remote/LICENSE.TXT -text
 cdmlib-remote/README.TXT -text
 cdmlib-remote/pom.xml -text
@@ -1860,9 +1901,10 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TermController.ja
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TermListController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/VocabularyController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/VocabularyListController.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/csv/CsvDemoController.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/csv/CsvExportController.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/checklist/ChecklistDemoController.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/checklist/CsvExportController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/dto/NameCatalogueController.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/dto/OccurrenceCatalogueController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/dto/PolytomousKeyNodeDtoController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ext/ExternalBhleController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ext/ExternalGeoController.java -text
@@ -1925,12 +1967,12 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/SetSpec.java -tex
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/Status.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/Verb.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/package-info.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/occurrencecatalogue/OccurrenceSearch.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/package.html -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/AbstractLinkDto.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/LinkedPolytomousKeyNodeRowDto.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/PolytomousKeyNodeLinkDto.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/TaxonLinkDto.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/redlist/RedlistDTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/Actor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/BaseThing.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/Concept.java -text
@@ -1951,6 +1993,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/TaxonConcept.ja
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/TaxonName.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/TaxonRelationshipTerm.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/Team.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/vaadin/CdmTaxonTableCollection.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/CdmTypePropertyEditor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/DateTimeEditor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/DefinedTermBaseList.java -text
@@ -2036,6 +2079,8 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/E
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/LoginView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/widgetset/AppWidgetSet.gwt.xml -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/BaseView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/CsvFileDownloadView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/FileDownloadView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/HtmlView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/JsonView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/OaiPmhResponseView.java -text
@@ -2058,6 +2103,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/oaipmh/rdf/ListRecordsV
 cdmlib-remote/src/main/java/eu/etaxonomy/remote/dto/rdf/Rdf.java -text
 cdmlib-remote/src/main/java/net/sf/json/CycleSetAcess.java -text
 cdmlib-remote/src/main/java/ru/xpoft/vaadin/CdmDiscoveryNavigator.java -text
+cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote-security.xml -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote.xml -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/dwc/mappings.xml -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/oaipmh/mappings.xml -text
@@ -2072,6 +2118,7 @@ cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/assembler/lsid/Assembler
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/AuthorityControllerTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/DataControllerTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/MetadataControllerTest.java -text
+cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/JsonToCsvViewTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/OaiPmhViewTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/RdfViewTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/test/function/GenericRemoteTester.java -text
@@ -2095,6 +2142,8 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/FirstDataInserter
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/ICdmApplicationConfiguration.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/MonitoredGenericApplicationContext.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/MonitoredListableBeanFactory.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/cache/CdmCacher.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/cache/CdmDaoCacher.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/ConversationHolder.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/ConversationHolderMock.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/IConversationEnabled.java -text
@@ -2194,6 +2243,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IFindTaxaAndNa
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IIdentifiableEntityServiceConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IdentifiableServiceConfiguratorFactory.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IdentifiableServiceConfiguratorImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IncludedTaxonConfiguration.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/MatchingTaxonConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/NameDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/SynonymDeletionConfigurator.java -text
@@ -2203,6 +2253,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonNodeDelet
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TermDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/description/TransmissionEngineDistribution.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/DistributionInfoDTO.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/IncludedTaxaDTO.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/DataChangeNoRollbackException.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/HomotypicalGroupChangeException.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/ReferencedObjectUndeletableException.java -text
@@ -2222,6 +2273,12 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/LsidWsdlWra
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/LsidWsdlWrapperImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/Pattern.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/TaxonMetadataMapper.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/AmplificationServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/IAmplificationService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/IPrimerService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/ISequenceService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/PrimerServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/SequenceServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/Pager.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/PagerUtils.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/AbstractPagerImpl.java -text
@@ -2267,6 +2324,8 @@ cdmlib-services/src/main/resources/wsdl/LSIDDataServiceHTTPBindings.wsdl -text
 cdmlib-services/src/main/resources/wsdl/LSIDDataServiceSOAPBindings.wsdl -text
 cdmlib-services/src/main/resources/wsdl/LSIDPortTypes.wsdl -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/application/FirstDataInserterTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/cache/CdmCacherTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/cache/MockCdmCacher.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldUnitCacheStrategyTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.java -text
@@ -2280,6 +2339,7 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentifiableServiceBa
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentificationKeyGeneratorTTT.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGeneratorTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/OccurenceServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PolytomousKeyNodeServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PreferenceServiceImplTest.java -text
@@ -2298,6 +2358,9 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDAuthoritySer
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDDataServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDMetadataServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDRegistryTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/AmplificationServiceTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/PrimerServiceTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/SequenceServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/pager/PagerTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/utility/DescriptionUtilityTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/scripts/FixMultipleTextDataInImageGalleries.java -text
@@ -2394,15 +2457,21 @@ src/site/apt/index.apt -text
 src/site/apt/oai-pmh.apt -text
 src/site/apt/overview.apt -text
 src/site/apt/reference.apt -text
+src/site/apt/remote/checklist-catalogue-default.apt -text
+src/site/apt/remote/checklist-catalogue-export.apt -text
+src/site/apt/remote/checklist-catalogue-exportCSV.apt -text
+src/site/apt/remote/checklist-catalogue-flockSearch.apt -text
 src/site/apt/remote/name-catalogue-accepted.apt -text
 src/site/apt/remote/name-catalogue-default.apt -text
 src/site/apt/remote/name-catalogue-fuzzy.apt -text
 src/site/apt/remote/name-catalogue-name-info.apt -text
 src/site/apt/remote/name-catalogue-taxon-info.apt -text
+src/site/apt/remote/occurrence-catalogue-default.apt -text
 src/site/apt/remote/search-fulltext-info.apt -text
 src/site/apt/remote/search-name-default.apt -text
 src/site/apt/remote/search-taxon-info.apt -text
 src/site/apt/rest-api-name-catalogue.apt -text
+src/site/apt/rest-api-occurrence-catalogue.apt -text
 src/site/apt/rest-api-search.apt -text
 src/site/apt/rest-api-statistics.apt -text
 src/site/apt/rest-api.apt -text
@@ -2412,3 +2481,4 @@ src/site/resources/images/cdm-server-oai-pmh.png -text
 src/site/resources/images/cdmlib-arch4.png -text
 src/site/resources/images/cdmlib_overview.png -text
 src/site/site.xml -text
+src/test/resources/h2/cdmTest.h2.db -text svneol=unset#unset