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[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index dc1de026a1a18ba3ba610a2200e4edd38433bff0..4e3978a0283f7c3f08b293d9ed6ce45807443528 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -2,22 +2,24 @@
 /INSTALL.TXT -text
 /LICENSE.TXT -text
 app-import/pom.xml -text
-app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImportActivator.java -text
-app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelSources.java -text
-app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmDestinations.java -text
-app-import/src/main/java/eu/etaxonomy/cdm/io/vienna/Activator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/AccountStore.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelImportActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelSources.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/CdmDestinations.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/CichorieaeActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/viennaImport/Activator.java -text
 app-import/src/main/resources/Asteraceae[!!-~]Specimen[!!-~]Images[!!-~]Vienna.xls -text
 app-import/src/main/resources/log4j.properties -text
 cdmlib-commons/LICENSE.TXT -text
 cdmlib-commons/README.TXT -text
 cdmlib-commons/pom.xml -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/CdmUtils.java -text
-cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/UuidGenerator.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/XmlHelp.java -text
 cdmlib-commons/src/main/resources/MUST-EXIST.txt -text
 cdmlib-commons/src/main/resources/log4j.properties -text
 cdmlib-commons/src/site/site.xml -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/CdmUtilsTest.java -text
+cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/UuidGenerator.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/XmlHelpTest.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
@@ -28,10 +30,13 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelAuthorIO.java
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelFactsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelNameFactsIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelOccurrenceIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelReferenceIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonNameIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTransformer.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTypesIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmBooleanMapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmIOMapperBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/CdmStringMapper.java -text
@@ -69,6 +74,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ICdmBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ILoadableTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IOriginalSource.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IParsable.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IReferencedEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IRelated.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IdentifiableEntity.java -text
@@ -88,6 +94,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipBase.java -
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Representation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermLanguageComparator.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TimePeriod.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/VersionableEntity.java -text
@@ -140,7 +147,8 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/IMediaDocumented.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/IdentifyableMediaEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/ImageFile.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/Media.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaInstance.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaRepresentation.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaRepresentationPart.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MovieFile.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/ReferencedMedia.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/Rights.java -text
@@ -160,6 +168,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/HybridRelationshipType.ja
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NameRelationship.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NameRelationshipType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NameTypeDesignation.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalCode.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatus.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatusType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NonViralName.java -text
@@ -173,7 +182,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Collection.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEventType.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnit.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnitBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationModifier.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/FieldObservation.java -text
@@ -235,15 +244,17 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/TeamDefaultCacheStrat
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/ZooNameDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/StringNotParsableException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/UnknownCdmTypeException.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/ITaxonNameParser.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TaxonNameParserBotanicalNameImpl.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TaxonNameParserZoologicalNameImpl.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/INonViralNameParser.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImpl.java -text
+cdmlib-model/src/main/resources/log4j.properties -text
 cdmlib-model/src/main/resources/terms/Continent.csv -text
 cdmlib-model/src/main/resources/terms/DerivationEventType.csv -text
 cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/Language.csv -text
 cdmlib-model/src/main/resources/terms/MarkerType.csv -text
 cdmlib-model/src/main/resources/terms/NameRelationshipType.csv -text
+cdmlib-model/src/main/resources/terms/NamedAreaType.csv -text
+cdmlib-model/src/main/resources/terms/NomenclaturalCode.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text
 cdmlib-model/src/main/resources/terms/README.TXT -text
 cdmlib-model/src/main/resources/terms/Rank.csv -text
@@ -293,8 +304,9 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/BotanicNameCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/ZoologicalNameCacheStrategyTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/TaxonNameParserBotanicalNameImplTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImplTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestModel.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestSpecimen.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestNameCacheStrategies.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestTaxonNameParserBotanicalNameImpl.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
@@ -310,11 +322,14 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmTermInitializer.ja
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DataSourceNotFoundException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DatabaseTypeEnum.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DbSchemaValidation.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/H2Mode.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/ICdmDataSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/LocalH2.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/LocalHsqldb.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/VocabularyStoreImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/DatabaseTypeBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/Db2DatabaseType.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/H2DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/HSqlDbDatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/IDatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/MySQLDatabaseType.java -text
@@ -346,6 +361,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/IRef
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/fetch/CdmFetch.java -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
+cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/h2-datasource.xml -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/hsql-datasource.xml -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/persistence.xml -text
 cdmlib-persistence/src/main/resources/log4j.properties -text
@@ -387,8 +403,9 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/IBaseSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/IReferenceSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/IdentifiedString.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/InteractionFeatureSTO.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/LocalisedTermTO.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaInstanceSTO.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/LocalisedTermSTO.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaRepresenationPartSTO.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaRepresentationSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/MediaTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/NameRelationshipTO.java -text
@@ -410,9 +427,12 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TaxonSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TaxonTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TreeNode.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/AssemblerBase.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/LocalisedTermAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/MediaAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/NameAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/ReferenceAssembler.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/SpecimenAssembler.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/SpecimenTypeDesignationAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/TaxonAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/package.html -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/CdmObjectNonExisting.java -text
@@ -440,6 +460,8 @@ cdmlib-services/LICENSE.TXT -text
 cdmlib-services/README.TXT -text
 cdmlib-services/pom.xml -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationController.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationDefaultConfiguration.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/ICdmApplicationConfiguration.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSaveFileSystemXmlApplicationContext.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSaveGenericApplicationContext.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSavePathMatchingResourcePatternResolver.java -text
@@ -608,6 +630,8 @@ libraryTesterApplication/lib/spring-test-2.5.jar -text
 libraryTesterApplication/lib/spring-tx-2.5.jar -text
 libraryTesterApplication/lib/xercesImpl.jar -text
 libraryTesterApplication/lib/xml-apis.jar -text
+libraryTesterApplication/src/CdmDestinations.java -text
+libraryTesterApplication/src/Profiling.java -text
 libraryTesterApplication/src/testJar/TestJarMain.java -text
 musiclib-hibernatetest/listAnnotatedClasses.py -text
 musiclib-hibernatetest/pom.xml -text