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[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 1423e242cf7d812b94c5667b7e5b967eabfccbc0..c08ebd7cb9bc80cec3f831bb3fb67a167fe776aa 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -2,93 +2,220 @@
 /INSTALL.TXT -text
 /LICENSE.TXT -text
 app-import/pom.xml -text
-app-import/src/main/java/eu/etaxonomy/cdm/app/abcdImport/ABCD206Activator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/abcdImport/SpecimenImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/abcdImport/SynthesysCacheActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/BerlinModelSources.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/CichorieaeActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/DipteraActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/DipteraDistributionParser.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/ErmsActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/EuroMedActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/SalvadorActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/TreeCreator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/common/CdmDestinations.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/excelImport/distribution/CichorieaeDistributionActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/CdmDiffActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/jaxb/CdmExportActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/SDDSources.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/sdd/ViolaActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/synthesysImport/SpecimenImport.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/synthesysImport/SynthesysCacheActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/PalmaeActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/PalmaeTaxonXImportActivator.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/TcsSources.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/tcs/TcsXmlTestActivator.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/util/TestDatabase.java -text
+app-import/src/main/java/eu/etaxonomy/cdm/app/util/TestTransaction.java -text
 app-import/src/main/java/eu/etaxonomy/cdm/app/viennaImport/ViennaActivator.java -text
 app-import/src/main/resources/Asteraceae[!!-~]Specimen[!!-~]Images[!!-~]Vienna.xls -text
 app-import/src/main/resources/AsteraceaeSpecimenImagesVienna.mdb -text
+app-import/src/main/resources/SDD-Test-Simple.xml -text
 app-import/src/main/resources/arecaceae.rdf -text
 app-import/src/main/resources/log4j.properties -text
-app-import/src/main/resources/taxonX/Utf8/Kopie[!!-~]von[!!-~]palm_tn_222905.xml -text
-app-import/src/main/resources/taxonX/Utf8/Kopie[!!-~]von[!!-~]palm_tn_222911.xml -text
-app-import/src/main/resources/taxonX/Utf8/palm_tn_222905.xml -text
-app-import/src/main/resources/taxonX/Utf8/palm_tn_222911.xml -text
-app-import/src/main/resources/taxonX/_alt/Beccariophoenix_madagascariensis.xml -text
-app-import/src/main/resources/taxonX/_alt/Bismarckia_nobilis.xml -text
-app-import/src/main/resources/taxonX/_alt/Dypsis_basilonga.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29336.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29339.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29350.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29352.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29356.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29361.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29366.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29367.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29371.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29372.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29375.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29385.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29394.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29401.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29404.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29410.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29419.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29422.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29423.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29424.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29425.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29427.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29428.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29429.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29430.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29684.xml -text
-app-import/src/main/resources/taxonX/palm_tn_29864.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed.zip -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29333.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29336.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29339.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29350.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29352.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29356.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29361.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29366.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29367.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29371.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29372.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29375.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29385.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29394.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29401.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29404.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29410.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29419.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29422.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29423.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29424.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29425.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29427.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29428.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29429.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29430.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29684.xml -text
-app-import/src/main/resources/taxonX/zip/taxonX_ForImport_renamed/taxonX_ForImport_renamed/palm_tn_29864.xml -text
+app-import/src/main/resources/specimenABCD/CDMtabular9c04a474e2_23_09_08.xls -text
+app-import/src/main/resources/specimenABCD/multiABCD.xml -text
+app-import/src/main/resources/taxonX/original/081013_palmae_taxonX.zip -text
+app-import/src/main/resources/taxonX/palm_tc_20300.xml -text
+app-import/src/main/resources/taxonX/palm_tc_22257.xml -text
+app-import/src/main/resources/taxonX/palm_tc_222903.xml -text
+app-import/src/main/resources/taxonX/palm_tc_222904.xml -text
+app-import/src/main/resources/taxonX/palm_tc_222905.xml -text
+app-import/src/main/resources/taxonX/palm_tc_222908.xml -text
+app-import/src/main/resources/taxonX/palm_tc_222911.xml -text
+app-import/src/main/resources/taxonX/palm_tc_222915.xml -text
+app-import/src/main/resources/taxonX/palm_tc_222917.xml -text
+app-import/src/main/resources/taxonX/palm_tc_23014.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29333.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29354.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29359.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29367.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29440.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29442.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29449.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29456.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29473.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29474.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29480.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29487.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29488.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29492.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29497.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29498.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29499.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29514.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29519.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29521.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29525.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29530.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29535.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29542.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29546.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29554.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29561.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29566.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29572.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29574.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29576.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29584.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29593.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29594.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29595.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29602.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29614.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29619.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29620.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29621.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29628.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29631.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29632.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29633.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29635.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29636.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29639.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29648.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29652.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29655.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29661.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29664.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29665.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29666.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29667.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29677.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29678.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29679.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29688.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29709.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29710.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29723.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29733.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29745.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29746.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29750.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29751.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29758.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29762.xml -text
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+app-import/src/main/resources/taxonX/palm_tc_29765.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29779.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29785.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29792.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29794.xml -text
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+app-import/src/main/resources/taxonX/palm_tc_29804.xml -text
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+app-import/src/main/resources/taxonX/palm_tc_29817.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29822.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29824.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29826.xml -text
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+app-import/src/main/resources/taxonX/palm_tc_29969.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29970.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29974.xml -text
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+app-import/src/main/resources/taxonX/palm_tc_29986.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29991.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29993.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29995.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29997.xml -text
+app-import/src/main/resources/taxonX/palm_tc_29999.xml -text
+app-import/src/main/resources/taxonX/palm_tc_30003.xml -text
+app-import/src/main/resources/taxonX/palm_tc_30005.xml -text
+app-import/src/main/resources/taxonX/palm_tc_30014.xml -text
+app-import/src/main/resources/taxonX/palm_tc_30018.xml -text
+app-import/src/main/resources/taxonX/palm_tc_30023.xml -text
+app-import/src/main/resources/taxonX/palm_tc_30035.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65392.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65393.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65394.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65395.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65396.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65397.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65398.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65399.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65400.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65401.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65402.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65404.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65405.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65406.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65407.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65408.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65409.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65410.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65412.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65413.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65414.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65415.xml -text
+app-import/src/main/resources/taxonX/palm_tc_65416.xml -text
+app-import/src/main/resources/tcsXmlTest.xml -text
 cdmlib-commons/LICENSE.TXT -text
 cdmlib-commons/README.TXT -text
 cdmlib-commons/pom.xml -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/AccountStore.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/CdmUtils.java -text
+cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/DoubleResult.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/MediaMetaData.java -text
+cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/ResultWrapper.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/XmlHelp.java -text
 cdmlib-commons/src/main/resources/MUST-EXIST.txt -text
 cdmlib-commons/src/main/resources/log4j.properties -text
@@ -101,6 +228,11 @@ cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -te
 cdmlib-io/LICENSE.TXT -text
 cdmlib-io/README.TXT -text
 cdmlib-io/pom.xml -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/AbcdIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/SpecimenImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/SpecimenIoBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/UnitsGatheringArea.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/abcd206/UnitsGatheringEvent.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelAuthorIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelFactsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelIOBase.java -text
@@ -126,12 +258,32 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ICdmImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/IImportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ImportConfiguratorBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ImportHelper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ImportWrapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/MapWrapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/Source.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/SourceConnectionException.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/JaxbExportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/excel/distribution/DistributionImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/excel/distribution/DistributionImporter.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmDocumentBuilder.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmExporter.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmMarshallerListener.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmResourceResolver.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/CdmSchemaGenerator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/DataSet.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/JaxbExportImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/LsInputImpl.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/SDDDescriptionIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/SDDImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/SDDIoBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/SpecimenImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/SpecimenIoBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/SynthesysIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/UnitsGatheringArea.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/synthesys/UnitsGatheringEvent.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/SimpleSpecimen.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXDescriptionIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXNomenclatureIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXTransformer.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/CdmIoXmlMapperBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/CdmTextElementMapper.java -text
@@ -144,21 +296,28 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTaxonNameIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTaxonNameRelationsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTaxonRelationsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcs/TcsTransformer.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/DefaultTcsXmlPlaceholders.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/ITcsXmlPlaceholderClass.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlImportConfigurator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlIoBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlMetaDataIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlPublicationsIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlSpecimensIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTaxonIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTaxonNameIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTaxonNameRelationsIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTaxonRelationsIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTransformer.java -text
 cdmlib-io/src/main/resources/log4j.properties -text
 cdmlib-io/src/site/site.xml -text
+cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/test/function/TestDatabase.java -text
 cdmlib-io/src/test/java/eu/etaxonomy/cdm/test/integration/TestCdmDbComparator.java -text
 cdmlib-model/LICENSE.TXT -text
 cdmlib-model/README.TXT -text
 cdmlib-model/pom.xml -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/aspectj/PropertyChangeAspect.aj -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/datagenerator/TaxonGenerator.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmDocumentBuilder.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmMarshallerListener.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmResourceResolver.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmSchemaGenerator.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/DataSet.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/DateTimeAdapter.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/LsInputImpl.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/MultilanguageTextAdapter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/UUIDAdapter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Address.java -text
@@ -174,6 +333,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/TeamOrPersonBase.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotatableEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Annotation.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotationType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/EventBase.java -text
@@ -201,6 +361,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/NoDefinedTermClassExcep
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OriginalSource.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/PartialUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ReferencedEntityBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipTermBase.java -text
@@ -300,6 +461,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Collection.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEventType.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnitBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationModifier.java -text
@@ -376,8 +538,11 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/UnknownCdmTypeEx
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/INonViralNameParser.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImpl.java -text
 cdmlib-model/src/main/resources/log4j.properties -text
+cdmlib-model/src/main/resources/terms/AbsenceTerm.csv -text
+cdmlib-model/src/main/resources/terms/AnnotationType.csv -text
 cdmlib-model/src/main/resources/terms/Continent.csv -text
 cdmlib-model/src/main/resources/terms/DerivationEventType.csv -text
+cdmlib-model/src/main/resources/terms/DeterminationModifier.csv -text
 cdmlib-model/src/main/resources/terms/Feature.csv -text
 cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/Language.csv -text
@@ -387,8 +552,12 @@ cdmlib-model/src/main/resources/terms/NamedAreaLevel.csv -text
 cdmlib-model/src/main/resources/terms/NamedAreaType.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalCode.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text
+cdmlib-model/src/main/resources/terms/PresenceTerm.csv -text
+cdmlib-model/src/main/resources/terms/PreservationMethod.csv -text
 cdmlib-model/src/main/resources/terms/README.TXT -text
 cdmlib-model/src/main/resources/terms/Rank.csv -text
+cdmlib-model/src/main/resources/terms/Sex.csv -text
+cdmlib-model/src/main/resources/terms/StatisticalMeasure.csv -text
 cdmlib-model/src/main/resources/terms/SynonymRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/TaxonRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/TdwgArea.csv -text
@@ -416,9 +585,6 @@ cdmlib-model/src/site/resources/images/uml/Types_section.png -text
 cdmlib-model/src/site/resources/images/uml/package_overview.png -text
 cdmlib-model/src/site/site.xml -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/jaxb/CdmDocumentBuilderTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/jaxb/CdmSchemaGeneratorTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/DataSetTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/DatabaseInitialiser.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/InstitutionalMembershipTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/AnnotationTest.java -text
@@ -431,11 +597,15 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabularyTe
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermVocabularyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/DefaultVocabularyStoreTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/TermLoaderTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/DistributionTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/TextDataTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/TdwgAreaTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BotanicalNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NonViralNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/RankTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/TaxonNameBaseTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/occurrence/SpecimenTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonComparatorTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonTest.java -text
@@ -444,6 +614,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/ZoologicalNameCa
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserImplTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestModel.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestSpecimen.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestUUID.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestBookDefaultCacheStrategies.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestNameCacheStrategies.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestTaxonNameParserBotanicalNameImpl.java -text
@@ -478,6 +649,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2000Da
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2005DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SybaseDatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/agent/IAgentDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IAnnotatableDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ICdmEntityDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/ICdmGenericDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IDefinedTermDao.java -text
@@ -494,7 +666,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/ID
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IFeatureDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IFeatureNodeDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IFeatureTreeDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IStatisticalMeasurementValueDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/agent/AgentDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/AnnotatableDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmGenericDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/DaoBase.java -text
@@ -511,6 +685,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/desc
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/FeatureDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/FeatureNodeDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/FeatureTreeDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/StatisticalMeasurementValueDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartHibernateImpl.java -text
@@ -567,6 +742,9 @@ cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPat
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathMatcher.java -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathMatcherException.java -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedUrlHandlerMapping.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/AnnotationElementSTO.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/AnnotationSTO.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/AnnotationTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/AssociationFeatureSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/BaseSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/BaseTO.java -text
@@ -607,6 +785,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TaxonSTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TaxonTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TreeNode.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TypeDesignationSTO.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/AnnotationAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/AssemblerBase.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/DescriptionAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/LocalisedTermAssembler.java -text
@@ -680,7 +859,6 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TermServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -text
-cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestJaxb.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestService.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestTaxonFunction.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/CreateDataTest.java -text
@@ -781,9 +959,7 @@ eclipse-plugin/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -t
 eclipse-plugin/xercesImpl.jar -text
 eclipse-plugin/xml-apis.jar -text
 eclipse-updateSite/.project -text
-eclipse-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
 eclipse-updateSite/index.html -text
-eclipse-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
 eclipse-updateSite/site.xml -text
 libraryTesterApplication/.classpath -text
 libraryTesterApplication/.project -text