Fix merge problems
[cdmlib.git] / pom.xml
diff --git a/pom.xml b/pom.xml
index 77156785368924e3cabf0d672b6ef693aaf9a590..fcef4425221953ef2c1534ba5ded1c88cc2db180 100644 (file)
--- a/pom.xml
+++ b/pom.xml
@@ -3,7 +3,7 @@
   <modelVersion>4.0.0</modelVersion>
   <groupId>eu.etaxonomy</groupId>
   <artifactId>cdmlib-parent</artifactId>
-  <version>3.12.0-SNAPSHOT</version>
+  <version>4.3.0-SNAPSHOT</version>
   <name>CDM Library</name>
   <description>The Java implementation of the Common Data Model (CDM), the data model for EDIT's internet platform for cybertaxonomy.</description>
   <url>http://cybertaxonomy.eu/cdmlib/</url>
@@ -12,7 +12,8 @@
   <modules>
     <module>cdmlib-commons</module>
     <module>cdmlib-model</module>
-       <module>cdmlib-test</module>
+       <module>cdmlib-db</module>
+    <module>cdmlib-test</module>
     <module>cdmlib-persistence</module>
     <module>cdmlib-services</module>
     <module>cdmlib-ext</module>
   </modules>
   <properties>    
     <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-    <java.codelevel>1.6</java.codelevel>
-    <spring.version>4.2.3.RELEASE</spring.version>
+    <java.codelevel>1.7</java.codelevel>
+    <spring.version>4.2.4.RELEASE</spring.version>
     <spring-security.version>4.0.3.RELEASE</spring-security.version>
+       <hibernate.version>5.0.7.Final</hibernate.version>
        <hibernate-validator.version>5.2.2.Final</hibernate-validator.version>
-    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-       <hibernate.version>5.0.3.Final</hibernate.version>
-       <hibernate-search.version>5.5.0.Final</hibernate-search.version>
-    <lucene.version>5.3.1</lucene.version>
+    <hibernate-search.version>5.5.2.Final</hibernate-search.version>
+    <lucene.version>5.4.1</lucene.version>
        <unitils.version>3.4.2</unitils.version>
     <hsqldb.version>2.3.3</hsqldb.version>
        <!-- <hsqldb.version>1.8.0.10</hsqldb.version>  -->
        <!-- 1.8.0.10, 1.9.0-rc6 (manually build only for debugging) -->
-       <mysql.version>5.1.37</mysql.version>
     <httpcomponents.version>4.5.1</httpcomponents.version>
     <doxia.version>1.6</doxia.version>
     <poi.version>3.13</poi.version>
-    <jackson.version>2.6.3</jackson.version>
+    <jackson.version>2.6.5</jackson.version>
        <commons-logging.version>1.2</commons-logging.version>
        <slf4j.version>1.7.13</slf4j.version>
        <jaxb.version>2.2.11</jaxb.version>
        <cglib.version>3.2.0</cglib.version>
+       <aspectj.version>1.8.8</aspectj.version>
   </properties>
   
   <scm>
     <maven>3.0.5</maven>
   </prerequisites>
   
-  <mailingLists>
-    <mailingList>
-      <name>dev-edit</name>
-      <subscribe>
-                https://listes.mnhn.fr/wwsympa.fcgi/suboptions/dev-edit
+    <mailingLists>
+        <mailingList>
+            <name>EDIT Platform Developers</name>
+            <subscribe>
+                https://lists.fu-berlin.de/listinfo/editplatformdevelopers#subscribe
             </subscribe>
-      <unsubscribe>
-                https://listes.mnhn.fr/wwsympa.fcgi/signoff/dev-edit
+            <unsubscribe>
+                https://lists.fu-berlin.de/listinfo/editplatformdevelopers#options
             </unsubscribe>
-      <post>dev-edit@mnhn.fr</post>
-      <archive>https://listes.mnhn.fr/wwsympa.fcgi/arc/dev-edit</archive>
-    </mailingList>
-    <mailingList>
-      <name>cdm-edit</name>
-      <post>cdm-edit@mnhn.fr</post>
-      <subscribe>
-                https://listes.mnhn.fr/wwsympa.fcgi/suboptions/cdm-edit
+        </mailingList>
+        <mailingList>
+            <name>EDIT User</name>
+            <subscribe>
+                https://lists.fu-berlin.de/listinfo/edituser#subscribe
             </subscribe>
-      <unsubscribe>
-                https://listes.mnhn.fr/wwsympa.fcgi/signoff/cdm-edit
+            <unsubscribe>
+                https://lists.fu-berlin.de/listinfo/edituser#options
             </unsubscribe>
-      <archive>https://listes.mnhn.fr/wwsympa.fcgi/arc/cdm-edit</archive>
-    </mailingList>
-  </mailingLists>
+        </mailingList>
+    </mailingLists>
   <licenses>
     <license>
       <name>Mozilla Public License Version 1.1</name>
             <groupId>org.hibernate</groupId>
             <artifactId>hibernate</artifactId>
           </exclusion>
+          <exclusion>
+            <groupId>org.slf4j</groupId>
+            <artifactId>slf4j-nop</artifactId>
+          </exclusion>
         </exclusions>
       </dependency>
       <dependency>
       <dependency>
         <groupId>org.aspectj</groupId>
         <artifactId>aspectjrt</artifactId>
-        <version>1.7.4</version>
+        <version>${aspectj.version}</version>
       </dependency>
       <dependency>
         <groupId>org.aspectj</groupId>
         <artifactId>aspectjweaver</artifactId>
-        <version>1.7.4</version>
+        <version>${aspectj.version}</version>
       </dependency>
       <!-- ******* VARIOUS ******* -->
       <dependency>
       <!-- TODO com.springsource.org.aopalliance and com.springsource.org.apache.commons.logging 
         seem to be duplicates of e.g. apache commons-logging. Needs to be further 
         checked. -->
+         <!-- since hibernate 5.0.4 Dialect throws exception if jta is missing  -->
+         <dependency>
+        <groupId>javax.transaction</groupId>
+        <artifactId>jta</artifactId>
+        <version>1.1</version>
+      </dependency>  
+               
       <!-- TODO xerces xmlParserAPIs duplicates many classes from jre and 
         xml-apis. It is a dependency that comes with xom:xom -->
       <dependency>
         <artifactId>usertype.jodatime</artifactId>
         <version>2.0.1</version>
       </dependency>
-         
       <dependency>
         <groupId>org.apache.lucene</groupId>
         <artifactId>lucene-core</artifactId>
         <version>${lucene.version}</version>
       </dependency>
-<<<<<<< HEAD
-         <!--  OLD concept, not under development anymore,
-     to be removed as soon as CdmMassIndexer is updated -->
-      <dependency>
-        <groupId>org.apache.lucene</groupId>
-        <artifactId>lucene-spellchecker</artifactId>
-        <version>3.6.2</version>
-=======
          <dependency>
                <groupId>org.apache.lucene</groupId>
                <artifactId>lucene-suggest</artifactId>
                <version>${lucene.version}</version>
          </dependency>
+         <dependency>
+               <groupId>org.apache.lucene</groupId>
+               <artifactId>lucene-analyzers-common</artifactId>
+               <version>${lucene.version}</version>
+         </dependency>
          <dependency>
         <groupId>org.apache.lucene</groupId>
         <artifactId>lucene-queryparser</artifactId>
         <version>${lucene.version}</version>
->>>>>>> Upgrade to hibernate 5 with persistence tests running  #4716
       </dependency>
       <dependency>
         <groupId>org.apache.lucene</groupId>
         <artifactId>lucene-join</artifactId>
         <version>${lucene.version}</version>
       </dependency>
-
+      <dependency>
+        <groupId>org.apache.lucene</groupId>
+        <artifactId>lucene-backward-codecs</artifactId>
+        <version>${lucene.version}</version>
+      </dependency>
+      <dependency>
+        <groupId>org.apache.lucene</groupId>
+        <artifactId>lucene-misc</artifactId>
+        <version>${lucene.version}</version>
+      </dependency>
+      <dependency>
+        <groupId>org.apache.lucene</groupId>
+        <artifactId>lucene-facet</artifactId>
+        <version>${lucene.version}</version>
+      </dependency>
+            
       <dependency>
         <groupId>com.ibm.lsid</groupId>
         <artifactId>lsid-client</artifactId>
       <dependency>
         <groupId>xml-apis</groupId>
         <artifactId>xml-apis</artifactId>
-        <version>2.0.2</version>
+        <!-- 
+            WARNING: do not upgrade to later versions 2.0.x of xml-apis
+            since these are effectivly reloated to the early beta version
+            1.0.b2
+        -->
+        <version>1.4.01</version>
       </dependency>
       <dependency>
         <groupId>xerces</groupId>
           <!-- used in eu.etaxonomy.cdm.io.markup and for swagger -->
           <groupId>com.google.guava</groupId>
           <artifactId>guava</artifactId>
-          <version>18.0</version>
+          <version>19.0</version>
       </dependency>
       <dependency>
         <groupId>jaxen</groupId>
       <dependency>
         <groupId>com.thoughtworks.xstream</groupId>
         <artifactId>xstream</artifactId>
-        <version>1.4.8</version>
+        <version>1.4.7</version>
       </dependency>
       <dependency>
         <groupId>xpp3</groupId>
       <dependency>
         <groupId>net.sf.saxon</groupId>
         <artifactId>Saxon-HE</artifactId>
-        <version>9.6.0-7</version>
+        <version>9.7.0-2</version>
       </dependency>
       <!-- ******* http components (ViBRANT)******* -->
       <dependency>
       <!-- ******* HIBERNATE / EJB3 ******* -->
       <dependency>
         <groupId>org.hibernate.javax.persistence</groupId>
-        <artifactId>hibernate-jpa-2.0-api</artifactId>
-        <version>1.0.1.Final</version>
+        <artifactId>hibernate-jpa-2.1-api</artifactId>
+        <version>1.0.0.Final</version>
       </dependency>
       <dependency>
         <groupId>org.hibernate</groupId>
       <dependency>
         <groupId>com.mchange</groupId>
         <artifactId>c3p0</artifactId>
-        <version>0.9.5.1</version>
+        <!-- 
+          IMPORTANT!!!
+          when changing the version of this artifact, the 
+          version in cdm-server pom.xml must be changed 
+          the same otherwise db connections through jndi 
+          will not work!
+                 NOTE: not so critical anymore as we use cdmlib-db
+                 now for both projects
+        -->
+        <version>0.9.5.2</version>
       </dependency>
       <dependency>
         <groupId>org.hibernate.common</groupId>
         <artifactId>hibernate-commons-annotations</artifactId>
-        <version>5.0.0.Final</version>
+        <version>5.0.1.Final</version>
       </dependency>
       <dependency>
         <groupId>org.hibernate</groupId>
-        <artifactId>hibernate-search</artifactId>
-        <version>4.2.0.Final</version>
+        <artifactId>hibernate-search-orm</artifactId>
+        <version>${hibernate-search.version}</version>
       </dependency>
       <dependency>
         <groupId>org.hibernate</groupId>
         <artifactId>hibernate-search-engine</artifactId>
-        <version>4.2.0.Final</version>
+        <version>${hibernate-search.version}</version>
       </dependency>
       <dependency>
         <groupId>org.javassist</groupId>
         <artifactId>javax.servlet-api</artifactId>
         <version>3.1.0</version>
       </dependency>
-      <!-- ******* DATABASES DRIVER ******* -->
-      <dependency>
-        <!-- SQL Server and Sybase -->
-        <groupId>net.sourceforge.jtds</groupId>
-        <artifactId>jtds</artifactId>
-        <version>1.3.1</version>
-      </dependency>
-      <dependency>
-        <groupId>mysql</groupId>
-        <artifactId>mysql-connector-java</artifactId>
-        <version>${mysql.version}</version>
-      </dependency>
-         <dependency>
-            <groupId>org.postgresql</groupId>
-            <artifactId>postgresql</artifactId>
-            <version>9.4-1205-jdbc42</version>
-      </dependency>
-      <dependency>
-        <groupId>org.hsqldb</groupId>
-        <artifactId>hsqldb</artifactId>
-        <version>${hsqldb.version}</version>
-      </dependency>
-      <!--for sqlserver2008 and sqlserver2005 -->
-      <dependency>
-        <groupId>com.microsoft.sqlserver</groupId>
-        <artifactId>jdbc4</artifactId>
-        <version>2.0</version>
-      </dependency>
 
-      <dependency>
-        <groupId>oracle</groupId>
-        <artifactId>ojdbc14</artifactId>
-        <version>10.2.0.4.0</version>
-      </dependency>
-         <!--    <dependency>
-               <groupId>ojdbc</groupId>
-               <artifactId>ojdbc</artifactId>
-               <version>14</version>
-       </dependency>   -->
-      <dependency>
-        <groupId>com.h2database</groupId>
-        <artifactId>h2</artifactId>
-        <!-- <version>1.1.115</version> -->
-        <version>1.4.190</version>
-      </dependency>
       <!-- yourkit profiler api controller (used in ..) -->
       <dependency>
         <groupId>com.yourkit</groupId>
         <artifactId>yjp-controller-api-redist</artifactId>
-        <version>9.0.8</version>
-        <!-- <version>10.0.6</version> TODO find repo or put into our own -->
+        <version>2015-build-15086</version>
         <scope>test</scope>
       </dependency>
       <!-- For Validation -->
         <groupId>org.hibernate</groupId>
         <artifactId>hibernate-validator</artifactId>
         <version>${hibernate-validator.version}</version>
+      </dependency>
+      <dependency>
+        <groupId>com.fasterxml</groupId>
+        <artifactId>classmate</artifactId>
+        <version>1.3.1</version>
       </dependency>
          <dependency>
        <groupId>javax.el</groupId>
        <artifactId>javax.el-api</artifactId>
-       <version>2.2.4</version>
+       <version>2.2.5</version>
          </dependency>
          <dependency>
                <groupId>org.glassfish.web</groupId>
                <artifactId>javax.el</artifactId>
-               <version>2.2.4</version>
+               <version>2.2.6</version>
          </dependency>
          <dependency>
            <groupId>org.hibernate</groupId>
                <version>${hibernate-validator.version}</version>
          </dependency>
          
-      <dependency>
-        <groupId>p6spy</groupId>
-        <artifactId>p6spy</artifactId>
-        <version>1.3</version>
-      </dependency>
       <!-- for ikey-plus -->
       <dependency>
         <groupId>identificationKeyAPI</groupId>
         <artifactId>identificationKeyAPI</artifactId>
-        <version>1.0-SNAPSHOT</version>
+        <version>1.0</version>   <!-- was <version>1.0-SNAPSHOT</version> -->
       </dependency>
       <dependency>
         <groupId>com.itextpdf</groupId>
         <artifactId>itextpdf</artifactId>
-        <version>5.5.7</version>
+        <version>5.5.8</version>
         <scope>compile</scope>
       </dependency>
       <!-- AptView -->
       </dependency>
       <!-- swagger (rest service doc) -->
       <dependency>
-        <groupId>com.wordnik</groupId>
+        <groupId>io.swagger</groupId>
         <artifactId>swagger-annotations</artifactId>
-        <!-- should match the swagger-spring depends on -->
-        <version>1.3.5</version>
-      </dependency>
-      <dependency>
-        <groupId>com.mangofactory</groupId>
-        <artifactId>swagger-springmvc</artifactId>
-        <version>0.8.5</version>
-        <exclusions>
-          <exclusion>
-            <groupId>org.springframework</groupId>
-            <artifactId>spring-test</artifactId>
-          </exclusion>
-          <exclusion>
-            <groupId>org.springframework</groupId>
-            <artifactId>spring-web</artifactId>
-          </exclusion>
-<!--           <exclusion>  -currently not referenced by any other project
-            <groupId>org.springframework</groupId>
-            <artifactId>spring-webmvc</artifactId>
-          </exclusion> -->
-        </exclusions>
+        <!-- should match the springfox-swagger2 depends on -->
+        <version>1.5.6</version>
       </dependency>
+
       <!-- dependencies for swagger-springmvc, added explicitely -->
-      <dependency>
+        <dependency>
         <groupId>com.fasterxml.jackson.core</groupId>
         <artifactId>jackson-databind</artifactId>
         <version>${jackson.version}</version>
         <groupId>com.fasterxml.jackson.core</groupId>
         <artifactId>jackson-annotations</artifactId>
         <version>${jackson.version}</version>
-      </dependency>
+      </dependency> 
       <!-- END of dependencies for swagger-springmvc, added explicitely -->
+      <dependency>
+        <groupId>io.springfox</groupId>
+        <artifactId>springfox-swagger2</artifactId>
+        <version>2.4.0</version>
+      </dependency>
+      
+      <!-- ******* DATABASES DRIVER ******* -->
+      <dependency>
+        <groupId>mysql</groupId>
+        <artifactId>mysql-connector-java</artifactId>
+        <version>5.1.38</version>
+      </dependency>
+      <dependency>
+         <groupId>org.postgresql</groupId>
+         <artifactId>postgresql</artifactId>
+         <version>9.4-1206-jdbc4</version>
+      </dependency>
+         <dependency>
+        <groupId>com.h2database</groupId>
+        <artifactId>h2</artifactId>
+        <version>1.4.190</version>
+      </dependency>
+      <!--for sqlserver2008 and sqlserver2005 -->
+      <dependency>
+        <groupId>com.microsoft.sqlserver</groupId>
+        <artifactId>jdbc4</artifactId>
+        <version>2.0</version>
+      </dependency>
+         <dependency>
+        <groupId>org.hsqldb</groupId>
+        <artifactId>hsqldb</artifactId>
+        <version>${hsqldb.version}</version>
+      </dependency>
+      <dependency>
+        <!-- SQL Server and Sybase -->
+        <groupId>net.sourceforge.jtds</groupId>
+        <artifactId>jtds</artifactId>
+        <version>1.3.1</version>
+      </dependency>
+      <dependency>
+        <groupId>oracle</groupId>
+        <artifactId>ojdbc14</artifactId>
+        <version>10.2.0.4.0</version>
+      </dependency>
+      <!--    <dependency>
+        <groupId>ojdbc</groupId>
+        <artifactId>ojdbc</artifactId>
+        <version>14</version>
+    </dependency>   -->      
     </dependencies>
   </dependencyManagement>
 </project>