fix failing test (specimen import)

[cdmlib.git] / .gitattributes

diff --git a/.gitattributes b/.gitattributes
index a2e88a06f0defd5fcccd97668495bc2402d21ba2..f0e8b61a9fc954dbee23c1f68044b444a0672d13 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -1056,6 +1056,7 @@ cdmlib-model/src/main/resources/terms/DnaMarkerChloroplast.csv -text
 cdmlib-model/src/main/resources/terms/DnaMarkerEukaryote.csv -text
 cdmlib-model/src/main/resources/terms/ExtensionType.csv -text
 cdmlib-model/src/main/resources/terms/Feature.csv -text
+cdmlib-model/src/main/resources/terms/FormerCountries -text
 cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/InstitutionType.csv -text
 cdmlib-model/src/main/resources/terms/Language.csv -text
@@ -1201,7 +1202,13 @@ cdmlib-persistence/LICENSE.TXT -text
 cdmlib-persistence/README.TXT -text
 cdmlib-persistence/pom.xml -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationUtils.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmPersistentSourceUtils.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmPersistentXMLSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmSourceException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/Configuration.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/ICdmPersistentSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/ICdmSource.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSource.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSourceBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmPersistentDataSource.java -text
@@ -1369,7 +1376,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/desc
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/AmplificationDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/PrimerDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/SequenceDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/HomotypicalGroupDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/NomenclaturalStatusDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TaxonNameDaoHibernateImpl.java -text
@@ -1398,7 +1407,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/Ty
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationPartDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/IAmplificationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/IPrimerDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/ISequenceDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/IHomotypicalGroupDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/INomenclaturalStatusDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/ITaxonNameDao.java -text
@@ -2050,6 +2061,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/E
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/LoginView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/widgetset/AppWidgetSet.gwt.xml -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/BaseView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/CsvFileDownloadView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/FileDownloadView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/HtmlView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/JsonView.java -text
@@ -2088,6 +2100,7 @@ cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/assembler/lsid/Assembler
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/AuthorityControllerTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/DataControllerTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/MetadataControllerTest.java -text
+cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/JsonToCsvViewTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/OaiPmhViewTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/RdfViewTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/test/function/GenericRemoteTester.java -text
@@ -2169,7 +2182,6 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IOccurrenceService.ja
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IPolytomousKeyNodeService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IPolytomousKeyService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IPreferenceService.java -text
-cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IPrimerService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IReferenceService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IStatisticsService.java -text
@@ -2193,7 +2205,6 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/OccurrenceServiceImpl
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/PolytomousKeyNodeServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/PreferenceServiceImpl.java -text
-cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/PrimerServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ReferenceServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ServiceBase.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ServiceImpl.java -text
@@ -2240,6 +2251,12 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/LsidWsdlWra
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/LsidWsdlWrapperImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/Pattern.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/TaxonMetadataMapper.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/AmplificationServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/IAmplificationService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/IPrimerService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/ISequenceService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/PrimerServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/SequenceServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/Pager.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/PagerUtils.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/AbstractPagerImpl.java -text
@@ -2298,6 +2315,7 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentifiableServiceBa
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentificationKeyGeneratorTTT.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGeneratorTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/OccurenceServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PolytomousKeyNodeServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PreferenceServiceImplTest.java -text
@@ -2316,6 +2334,9 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDAuthoritySer
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDDataServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDMetadataServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDRegistryTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/AmplificationServiceTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/PrimerServiceTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/SequenceServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/pager/PagerTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/utility/DescriptionUtilityTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/scripts/FixMultipleTextDataInImageGalleries.java -text
@@ -2412,6 +2433,7 @@ src/site/apt/index.apt -text
 src/site/apt/oai-pmh.apt -text
 src/site/apt/overview.apt -text
 src/site/apt/reference.apt -text
+src/site/apt/remote/checklist-catalogue-default.apt -text
 src/site/apt/remote/name-catalogue-accepted.apt -text
 src/site/apt/remote/name-catalogue-default.apt -text
 src/site/apt/remote/name-catalogue-fuzzy.apt -text