+ progressMonitor.subTask("Cleaning up.");\r
+ setApplicationContext(applicationContext);\r
+ progressMonitor.worked(1);\r
+\r
+ progressMonitor.done();\r
+ return true;\r
+ }\r
+\r
+\r
+\r
+\r
+\r
+ /**\r
+ * Tests if some DefinedTermsAreMissing.\r
+ * @return true, if at least one is missing, else false\r
+ */\r
+ public boolean testDefinedTermsAreMissing(){\r
+ UUID englishUuid = UUID.fromString("e9f8cdb7-6819-44e8-95d3-e2d0690c3523");\r
+ DefinedTermBase<?> english = this.getTermService().load(englishUuid);\r
+ if ( english == null || ! english.getUuid().equals(englishUuid)){\r
+ return true;\r
+ }else{\r
+ return false;\r
+ }\r
+ }\r
+\r
+\r
+ /**\r
+ * Changes the ApplicationContext to the new dataSource\r
+ * @param dataSource\r
+ */\r
+ public boolean changeDataSource(ICdmDataSource dataSource){\r
+ //logger.info("Change datasource to : " + dataSource);\r
+ return setNewDataSource(dataSource, DbSchemaValidation.VALIDATE, false, null);\r
+ }\r
+\r
+ /**\r
+ * Changes the ApplicationContext to the new dataSource\r
+ * @param dataSource\r
+ * @param dbSchemaValidation\r
+ */\r
+ public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation){\r
+ //logger.info("Change datasource to : " + dataSource);\r
+ return setNewDataSource(dataSource, dbSchemaValidation, false, null);\r
+ }\r
+\r
+ /**\r
+ * Changes the ApplicationContext to the new dataSource\r
+ * @param dataSource\r
+ * @param dbSchemaValidation\r
+ * @param omitTermLoading\r
+ */\r
+ public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading){\r
+ logger.info("Change datasource to : " + dataSource);\r
+ return setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading, null);\r
+ }\r
+\r
+ /**\r
+ * Changes the ApplicationContext to the new dataSource\r
+ * @param dataSource\r
+ * @param dbSchemaValidation\r
+ * @param omitTermLoading\r
+ */\r
+ public boolean changeDataSource(ICdmDataSource dataSource, DbSchemaValidation dbSchemaValidation, boolean omitTermLoading, List<ApplicationListener> listeners){\r
+ logger.info("Change datasource to : " + dataSource);\r
+ return setNewDataSource(dataSource, dbSchemaValidation, omitTermLoading, listeners);\r
+ }\r
+\r
+ /**\r
+ * Sets a new application Context.\r
+ * @param ac\r
+ */\r
+ public void setApplicationContext(AbstractApplicationContext ac){\r
+ closeApplicationContext(); //closes old application context if necessary\r
+ applicationContext = ac;\r
+ applicationContext.registerShutdownHook();\r
+ init();\r
+ }\r
+\r
+ /* (non-Javadoc)\r
+ * @see java.lang.Object#finalize()\r
+ */\r
+ public void finalize(){\r
+ close();\r
+ }\r
+\r
+ /**\r
+ * closes the application\r
+ */\r
+ public void close(){\r
+ closeApplicationContext();\r
+ }\r
+\r
+ /**\r
+ * closes the application context\r
+ */\r
+ protected void closeApplicationContext(){\r
+ if (applicationContext != null){\r
+ logger.info("Close ApplicationContext");\r
+ applicationContext.close();\r
+ }\r
+ }\r
+\r
+ protected void init(){\r
+ logger.debug("Init " + this.getClass().getName() + " ... ");\r
+ if (logger.isDebugEnabled()){for (String beanName : applicationContext.getBeanDefinitionNames()){ logger.debug(beanName);}}\r
+ //TODO delete next row (was just for testing)\r
+ if (logger.isInfoEnabled()){\r
+ logger.info("Registered Beans: ");\r
+ String[] beanNames = applicationContext.getBeanDefinitionNames();\r
+ for (String beanName : beanNames){\r
+ logger.info(beanName);\r
+ }\r
+ }\r
+ configuration = (ICdmApplicationConfiguration)applicationContext.getBean("cdmApplicationDefaultConfiguration");\r
+ getDatabaseService().setApplicationController(this);\r
+ }\r
+\r
+\r
+\r
+ /* ****** Services *********/\r
+ public final INameService getNameService(){\r
+ return configuration.getNameService();\r
+ }\r
+\r
+ public final ITaxonService getTaxonService(){\r
+ return configuration.getTaxonService();\r
+ }\r
+\r
+ public final IClassificationService getClassificationService(){\r
+ return configuration.getClassificationService();\r
+ }\r
+\r
+ public final ITaxonNodeService getTaxonNodeService(){\r
+ return configuration.getTaxonNodeService();\r
+ }\r
+\r
+ public final IReferenceService getReferenceService(){\r
+ return configuration.getReferenceService();\r
+ }\r
+\r
+ public final IAgentService getAgentService(){\r
+ return configuration.getAgentService();\r
+ }\r
+\r
+ public final IDatabaseService getDatabaseService(){\r
+ return configuration.getDatabaseService();\r
+ }\r
+\r
+ public final ITermService getTermService(){\r
+ return configuration.getTermService();\r
+ }\r
+\r
+ public final IDescriptionService getDescriptionService(){\r
+ return configuration.getDescriptionService();\r
+ }\r
+\r
+ public final IOccurrenceService getOccurrenceService(){\r
+ return configuration.getOccurrenceService();\r
+ }\r
+\r
+ public final IMediaService getMediaService(){\r
+ return configuration.getMediaService();\r
+ }\r
+\r
+ public final ICommonService getCommonService(){\r
+ return configuration.getCommonService();\r
+ }\r
+\r
+ public final ILocationService getLocationService(){\r
+ return configuration.getLocationService();\r
+ }\r
+\r
+ public final IUserService getUserService(){\r
+ return configuration.getUserService();\r
+ }\r
+\r
+ public final IGrantedAuthorityService getGrantedAuthorityService(){\r
+ return configuration.getGrantedAuthorityService();\r
+ }\r
+\r
+ public IGroupService getGroupService() {\r
+ return configuration.getGroupService();\r
+ }\r
+\r
+ public final ICollectionService getCollectionService(){\r
+ return configuration.getCollectionService();\r
+ }\r
+\r
+ public final IFeatureTreeService getFeatureTreeService(){\r
+ return configuration.getFeatureTreeService();\r
+ }\r
+\r
+ public final IFeatureNodeService getFeatureNodeService(){\r
+ return configuration.getFeatureNodeService();\r
+ }\r
+\r
+ public final IVocabularyService getVocabularyService(){\r
+ return configuration.getVocabularyService();\r
+ }\r
+\r
+ public final IIdentificationKeyService getIdentificationKeyService(){\r
+ return configuration.getIdentificationKeyService();\r
+ }\r
+\r
+ public final IPolytomousKeyService getPolytomousKeyService(){\r
+ return configuration.getPolytomousKeyService();\r
+ }\r
+\r
+ public final IPolytomousKeyNodeService getPolytomousKeyNodeService(){\r
+ return configuration.getPolytomousKeyNodeService();\r
+ }\r
+\r
+ public final IService<CdmBase> getMainService(){\r
+ return configuration.getMainService();\r
+ }\r
+\r
+ public final IWorkingSetService getWorkingSetService(){\r
+ return configuration.getWorkingSetService();\r
+ }\r
+\r
+ public final ConversationHolder NewConversation(){\r
+ //return (ConversationHolder)applicationContext.getBean("conversationHolder");\r
+ return configuration.NewConversation();\r
+ }\r
+\r
+\r
+ /* **** Security ***** */\r
+ \r
+ \r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#authenticate(java.lang.String, java.lang.String)\r
+ */\r
+ @Override\r
+ public void authenticate(String username, String password){\r
+ UsernamePasswordAuthenticationToken tokenForUser = new UsernamePasswordAuthenticationToken(username, password);\r
+ Authentication authentication = this.getAuthenticationManager().authenticate(tokenForUser);\r
+ SecurityContext context = SecurityContextHolder.getContext();\r
+ context.setAuthentication(authentication);\r
+ }\r
+ \r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getAuthenticationManager()\r
+ */\r
+ public final ProviderManager getAuthenticationManager(){\r
+ return configuration.getAuthenticationManager();\r
+ }\r
+\r
+\r
+ public ICdmPermissionEvaluator getPermissionEvaluator() {\r
+ return configuration.getPermissionEvaluator();\r
+ }\r
+\r
+ /**\r
+ * @see org.springframework.security.access.PermissionEvaluator#hasPermission(org.springframework.security.core.Authentication, java.lang.Object, java.lang.Object)\r
+ *\r
+ * @param targetDomainObject\r
+ * @param permission\r
+ * @return\r
+ */\r
+ public boolean currentAuthentiationHasPermissions(CdmBase targetDomainObject, EnumSet<CRUD> permission){\r
+ SecurityContext context = SecurityContextHolder.getContext();\r
+ return getPermissionEvaluator().hasPermission(context.getAuthentication(), targetDomainObject, permission);\r
+ }\r
+\r
+\r
+ @Override\r
+ public final PlatformTransactionManager getTransactionManager() {\r
+ return configuration.getTransactionManager();\r
+ }\r
+\r
+ public final Object getBean(String name){\r
+ return this.applicationContext.getBean(name);\r
+ }\r
+\r
+ /*\r
+ * OLD TRANSACTION STUFF\r
+ */\r
+\r
+ /* **** flush ***********/\r
+ public void flush() {\r
+ SessionFactory sf = (SessionFactory)applicationContext.getBean("sessionFactory");\r
+ sf.getCurrentSession().flush();\r
+ }\r
+\r
+ public SessionFactory getSessionFactory(){\r
+ return (SessionFactory)applicationContext.getBean("sessionFactory");\r
+ }\r
+\r
+ public TransactionStatus startTransaction() {\r
+ return startTransaction(false);\r
+ }\r
+\r
+ public TransactionStatus startTransaction(Boolean readOnly) {\r
+ return configuration.startTransaction(readOnly);\r
+ }\r
+\r
+ public void commitTransaction(TransactionStatus txStatus){\r
+ PlatformTransactionManager txManager = configuration.getTransactionManager();\r
+ txManager.commit(txStatus);\r
+ return;\r
+ }\r