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correct handling of null abbrev label in SingleTermUpdater
[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 40458f2e5f0d4fd8f961eb32bb6e19f4cd4d07c8..1ec5baf5f8a4879949a481f398f12d4dcfc568b2 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -4,6 +4,7 @@
 cdmlib-commons/LICENSE.TXT -text
 cdmlib-commons/README.TXT -text
 cdmlib-commons/pom.xml -text
+cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/AbstractStringComparator.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/AccountStore.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/CdmUtils.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/DOI.java -text
@@ -50,6 +51,10 @@ cdmlib-ext/pom.xml -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciServiceWrapper.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/IBciServiceWrapper.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQuery.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryGenerator.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapper.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseResponseSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/SchemaAdapterBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/ServiceWrapperBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/dc/DublinCoreSchemaAdapter.java -text
@@ -74,6 +79,7 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/scratchpads/ScratchpadsService.jav
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapper.java -text
 cdmlib-ext/src/main/resources/eu/etaxonomy/cdm/ext/geo/mapServices_v10.xsd -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/bci/BciServiceTest.java -text
+cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/EditGeoServiceTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/GeoServiceAreaTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceTest.java -text
@@ -705,6 +711,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/NotNullAwareIdBridg
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/PartialBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/SortFieldOptions.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/StripHtmlBridge.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/TaxonRelationshipClassBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/search/UuidBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmAccessor.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmAccessorFactoryImpl.java -text
@@ -734,15 +741,10 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Team.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/TeamOrPersonBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/package.html -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AbstractStringComparator.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotatableEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Annotation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotationType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmMetaData.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmPreference.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmPreferencesPredicateEnum.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmPreferencesSubject.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Credit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefaultTermInitializer.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java -text
@@ -869,6 +871,10 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MovieFile.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/Rights.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/RightsType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/package-info.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/CdmMetaData.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/CdmPreference.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/PreferencePredicate.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/PreferenceSubject.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Amplification.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Cloning.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaSample.java -text
@@ -1134,9 +1140,6 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/InstitutionalMembershipT
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/TeamTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/AnnotationTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmBaseTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmMetaDataTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmPreferencesSubjectTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmPreferencesTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefaultTermInitializerTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefinedTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/ExtensionTypeTest.java -text
@@ -1166,6 +1169,9 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/PointTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/TdwgAreaTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/media/MediaTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/media/MediaUtilsTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/metadata/CdmMetaDataTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/metadata/CdmPreferenceTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/metadata/PreferenceSubjectTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/molecular/MolecularTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BacterialNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BotanicalNameTest.java -text
@@ -1317,20 +1323,10 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SchemaU
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SpecimenMediaMoverUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/TermUpdater_31_33.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/TermVocabularyRepresentationUpdater.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AbstractBeanInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AnnotationTypeAutoInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AutoPropertyInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/GatheringEventLocationAutoInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IAlternativeSpellingSuggestionParser.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IBeanInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IMethodCache.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/MarkerTypeAutoInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/MediaAutoInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/MethodCacheImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/QueryParseException.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/TermBaseAutoInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/TitleCacheAutoInitializer.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/TypeDesignationAutoInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/agent/IAgentDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/AuditEventSort.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/common/IAnnotatableDao.java -text
@@ -1413,11 +1409,22 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/occurrence/CollectionDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/occurrence/OccurrenceDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/reference/ReferenceDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/statistics/StatisticsDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/ClassificationDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonAlternativeSpellingSuggestionParser.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/AbstractBeanInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/AnnotationTypeAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/AutoPropertyInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/GatheringEventLocationAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/IBeanInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/MarkerTypeAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/MediaAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/TermBaseAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/TitleAndNameCacheAutoInitializer.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/TypeDesignationAutoInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationPartDao.java -text
@@ -1428,6 +1435,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/ITypeDesi
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/occurrence/ICollectionDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/occurrence/IOccurrenceDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/IReferenceDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/statistics/IStatisticsDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/IClassificationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonNodeDao.java -text
@@ -1535,6 +1543,7 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TypeDesignationDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/occurrence/OccurrenceDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/reference/ReferenceDaoHibernateImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/statistics/StatisticsDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplBenchmark.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.java -text
@@ -1659,6 +1668,7 @@ cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/XMLHelper.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/XmlEntityFactoryBase.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/IPublishOutputModule.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/PublishOutputModuleBase.java -text
+cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/mediawiki/MediawikiOutputModule.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/odf/DocumentCreator.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/odf/IStyleNames.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/odf/OdfOutputModule.java -text
@@ -1671,6 +1681,8 @@ cdmlib-print/src/main/resources/log4j.properties -text
 cdmlib-print/src/main/resources/stylesheets/mediawiki/functx-1.0-doc-2007-01.xsl -text
 cdmlib-print/src/main/resources/stylesheets/mediawiki/multipages.xsl -text
 cdmlib-print/src/main/resources/stylesheets/odf/cdmToOdfText.xsl -text
+cdmlib-print/src/main/resources/stylesheets/pdf/Untitled21212.xml -text
+cdmlib-print/src/main/resources/stylesheets/pdf/caryophyllales.xsl -text
 cdmlib-print/src/main/resources/stylesheets/pdf/flora-malesiana.xsl -text
 cdmlib-print/src/main/resources/stylesheets/pdf/flore-afrique-centrale.xsl -text
 cdmlib-print/src/site/apt/download.apt -text
@@ -2102,6 +2114,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ReferenceServiceImpl.
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ServiceBase.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/StatisticsServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxaAndNamesSearchMode.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TermServiceImpl.java -text
@@ -2146,10 +2159,14 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/AbstractPa
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/DefaultPagerImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/StringLabelPagerImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/CdmMassIndexer.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/DocIdBitSetPrinter.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/DocumentSearchResult.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/ICdmMassIndexer.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/ILuceneIndexToolProvider.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/ISearchResultBuilder.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/LuceneIndexToolProviderImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/LuceneMultiSearch.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/LuceneMultiSearchException.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/LuceneSearch.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/QueryFactory.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/search/SearchResult.java -text