- change visibility of createTestDataSet to public

[cdmlib.git] / .gitattributes

diff --git a/.gitattributes b/.gitattributes
index e3682629a0839e8b75a9985c21fe4cb202e2767b..0afd937fddfdbccfd75b3994e225026dec9a860f 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -51,10 +51,6 @@ cdmlib-ext/pom.xml -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/BciServiceWrapper.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/bci/IBciServiceWrapper.java -text
-cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQuery.java -text
-cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryGenerator.java -text
-cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapper.java -text
-cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/biocase/BioCaseResponseSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/SchemaAdapterBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/common/ServiceWrapperBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/dc/DublinCoreSchemaAdapter.java -text
@@ -72,6 +68,15 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceAuthorConfigurator
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceConfiguratorBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceNamesConfigurator.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServicePublicationConfigurator.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/OccurenceQuery.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryGenerator.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryServiceWrapper.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/DataSetResponse.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifDataSetProtocol.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifJsonOccurrenceParser.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifQueryGenerator.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifQueryServiceWrapper.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifResponse.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlQuery.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlResponseSchemaAdapter.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapper.java -text
@@ -80,10 +85,11 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/scratchpads/ScratchpadsService.jav
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapper.java -text
 cdmlib-ext/src/main/resources/eu/etaxonomy/cdm/ext/geo/mapServices_v10.xsd -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/bci/BciServiceTest.java -text
-cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/biocase/BioCaseQueryServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/EditGeoServiceTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/geo/GeoServiceAreaTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceTest.java -text
+cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/occurrence/bioCase/BioCaseQueryServiceWrapperTest.java -text
+cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/occurrence/gbif/GbifQueryServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
@@ -203,6 +209,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IDbImportTransformed.
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IDbImportTransformer.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IInputTransformer.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IMappingImport.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IRdfMapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/IXmlMapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/InputTransformerBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/mapping/MultipleAttributeMapperBase.java -text
@@ -436,6 +443,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/abcd206/in/Abcd206Import.ja
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/abcd206/in/Abcd206ImportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/abcd206/in/Abcd206ImportState.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/abcd206/in/Abcd206XMLFieldGetter.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/abcd206/in/Identification.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/excel/in/ExtensionTypeExcelImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/excel/in/NamedAreaLevelExcelImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/specimen/excel/in/NamedAreaLevellRow.java -text
@@ -460,6 +468,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXImportState.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXModsImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXNomenclatureImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx/TaxonXTransformer.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXAddSources.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXDataHolder.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXExtractor.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXImport.java -text
@@ -469,7 +478,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXModsExtractor.java
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXTreatmentExtractor.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/taxonx2013/TaxonXXMLFieldGetter.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmOneToManyXmlMapper.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmSingleAttributeXmlMapperBase.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmSingleAttributeRDFMapperBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmTextElementMapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/CdmUnclearMapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfImportBase.java -text
@@ -481,6 +490,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTaxonNameImport.java -t
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTaxonNameRelationsImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTaxonRelationsImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsrdf/TcsRdfTransformer.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/CdmSingleAttributeXmlMapperBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/DefaultTcsXmlPlaceholders.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/ITcsXmlPlaceholderClass.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/tcsxml/TcsXmlTransformer.java -text
@@ -631,7 +641,9 @@ cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/sdd/varanusSDD_RatingExample_mo
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/sdd/wrongSDD.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/abcd206/in/ABCDImportTestCalvumPart1.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/abcd206/in/ABCDImportTestCalvumPart2.xml -text
+cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/abcd206/in/Campanula_ABCD_import_3_taxa_11_units.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/abcd206/in/SpecimenImportConfiguratorTest-input.xml -text
+cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/abcd206/in/SpecimenImportConfiguratorTest.doInvoke2.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/abcd206/in/SpecimenImportConfiguratorTest.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/excel/in/ExcelImportConfiguratorTest-input.xls -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/excel/in/ExcelSpecimenImportExampleTest-input.xls -text
@@ -649,10 +661,12 @@ cdmlib-model/LICENSE.TXT -text
 cdmlib-model/README.TXT -text
 cdmlib-model/pom.xml -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/aspectj/PropertyChangeAspect.aj -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/BigDecimalUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/DOIUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/EnumUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/HibernateProxyHelper.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/PartialUserType.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/ShiftUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/URIUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/UUIDUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/WSDLDefinitionUserType.java -text
@@ -690,6 +704,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/PartialAdapter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/TDWGNamespacePrefixMapper.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/UUIDAdapter.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/CdmBaseType.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/ICdmCacher.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Address.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/AgentBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Contact.java -text
@@ -727,6 +742,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IMultiLanguageText.java
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IMultiLanguageTextHolder.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IOriginalSource.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IParsable.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IPublishable.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IReferencedEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IRelated.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ISimpleTerm.java -text
@@ -735,6 +751,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ITreeNode.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IVersionableEntity.java -text svneol=unset#text/plain
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IdentifiableEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IdentifiableSource.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Identifier.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/LSID.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/LSIDAuthority.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/LSIDWSDLLocator.java -text
@@ -746,6 +763,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/MarkerType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/MultilanguageText.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/MultilanguageTextHelper.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/NoDefinedTermClassException.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OriginalSourceBase.java -text
@@ -768,11 +786,11 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/VocabularyEnum.java -te
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/WrongTermTypeException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/ITermInitializer.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/ITermLoader.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/MockCdmCacher.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermLoader.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermNotFoundException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package.html -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/AbsenceTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CategoricalData.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CommonTaxonName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionBase.java -text
@@ -794,8 +812,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MultiAccessKey.jav
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/NaturalLanguageTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKey.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKeyNode.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceTerm.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/QuantitativeData.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/SpecimenDescription.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/State.java -text
@@ -836,7 +853,9 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/CdmPreference.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/PreferencePredicate.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/metadata/PreferenceSubject.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Amplification.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/AmplificationResult.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Cloning.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaQuality.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaSample.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/PhylogeneticTree.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Primer.java -text
@@ -844,6 +863,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Sequence.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SequenceDirection.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SequenceString.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SingleRead.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/SingleReadAlignment.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/BacterialName.java -text
@@ -934,10 +954,12 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationship.java -
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationshipType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/package.html -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/validation/EntityConstraintViolation.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/validation/EntityValidationResult.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/validation/SeverityType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/AuditEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/AuditEventRecord.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/AuditEventRecordImpl.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/View.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/context/AuditEventContext.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/context/AuditEventContextHolder.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/context/AuditEventContextHolderStrategy.java -text
@@ -983,7 +1005,9 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/InRefDefaul
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/JournalDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/NomRefDefaultCacheStrategyBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/ReferenceDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/SectionDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/ThesisDefaultCacheStrategy.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/reference/WebPageDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/cache/taxon/TaxonBaseDefaultCacheStrategy.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/StringNotParsableException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/exceptions/UnknownCdmTypeException.java -text
@@ -1013,8 +1037,10 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/SpecimenTypeParser.j
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TaxonNameParserHistory.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/TimePeriodParser.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/strategy/parser/location/CoordinateConverter.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/CRUDEventType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/Level2.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/Level3.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/Severity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/ValidationException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/annotation/BasionymsMustShareEpithetsAndAuthors.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/annotation/ChildTaxaMustBeLowerRankThanParent.java -text
@@ -1044,7 +1070,6 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/constraint/StubValidator.
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/validation/constraint/TaxonNameCannotBeAcceptedAndSynonymValidator.java -text
 cdmlib-model/src/main/resources/ValidationMessages.properties -text
 cdmlib-model/src/main/resources/log4j.properties -text
-cdmlib-model/src/main/resources/terms/AbsenceTerm.csv -text
 cdmlib-model/src/main/resources/terms/AnnotationType.csv -text
 cdmlib-model/src/main/resources/terms/Continent.csv -text
 cdmlib-model/src/main/resources/terms/Country.csv -text
@@ -1052,13 +1077,17 @@ cdmlib-model/src/main/resources/terms/DerivationEventType.csv -text
 cdmlib-model/src/main/resources/terms/DeterminationModifier.csv -text
 cdmlib-model/src/main/resources/terms/DnaMarkerChloroplast.csv -text
 cdmlib-model/src/main/resources/terms/DnaMarkerEukaryote.csv -text
+cdmlib-model/src/main/resources/terms/DnaQualityType.csv -text
 cdmlib-model/src/main/resources/terms/ExtensionType.csv -text
 cdmlib-model/src/main/resources/terms/Feature.csv -text
+cdmlib-model/src/main/resources/terms/FormerCountries -text
 cdmlib-model/src/main/resources/terms/HybridRelationshipType.csv -text
+cdmlib-model/src/main/resources/terms/IdentifierType.csv -text
 cdmlib-model/src/main/resources/terms/InstitutionType.csv -text
 cdmlib-model/src/main/resources/terms/Language.csv -text
 cdmlib-model/src/main/resources/terms/MarkerType.csv -text
 cdmlib-model/src/main/resources/terms/MeasurementUnit.csv -text
+cdmlib-model/src/main/resources/terms/MediaSpecimenKindOfUnit.csv -text
 cdmlib-model/src/main/resources/terms/Modifier.csv -text
 cdmlib-model/src/main/resources/terms/NameFeature.csv -text
 cdmlib-model/src/main/resources/terms/NameRelationshipType.csv -text
@@ -1069,8 +1098,9 @@ cdmlib-model/src/main/resources/terms/NamedAreaType.csv -text
 cdmlib-model/src/main/resources/terms/NaturalLanguageTerm.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalCode.csv -text
 cdmlib-model/src/main/resources/terms/NomenclaturalStatusType.csv -text
+cdmlib-model/src/main/resources/terms/NomenclaturalStatusTypeIczn.csv -text
 cdmlib-model/src/main/resources/terms/PlantKindOfUnit.csv -text
-cdmlib-model/src/main/resources/terms/PresenceTerm.csv -text
+cdmlib-model/src/main/resources/terms/PresenceAbsenceTerm.csv -text
 cdmlib-model/src/main/resources/terms/PreservationMethod.csv -text
 cdmlib-model/src/main/resources/terms/README.TXT -text
 cdmlib-model/src/main/resources/terms/Rank.csv -text
@@ -1094,6 +1124,7 @@ cdmlib-model/src/main/resources/update/update_r2.1.2.2_r2.4.1.2.mysql.sql -text
 cdmlib-model/src/main/resources/update/update_term_r2.4.2.1-r2.4.2.2.mysql.sql -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/datagenerator/TaxonGenerator.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/hibernate/BigDecimalUserTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/DatabaseInitialiser.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/AgentValidationTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/InstitutionalMembershipTest.java -text
@@ -1122,7 +1153,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/DescriptionElement
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/FeatureTreeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PolytomousKeyNodeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PolytomousKeyTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBaseTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/TextDataTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/NamedAreaTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/PointTest.java -text
@@ -1132,6 +1163,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/media/MediaUtilsTest.java -tex
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/metadata/CdmMetaDataTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/metadata/CdmPreferenceTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/metadata/PreferenceSubjectTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/molecular/AmplificationTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/molecular/MolecularTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BacterialNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BotanicalNameTest.java -text
@@ -1160,6 +1192,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/common/TermDefaultCac
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/description/TaxonDescriptionDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/media/MediaDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/BotanicNameCacheStrategyTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/NameCacheStrategyTestBase.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/NonViralNameDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/ZooNameNoMarkerCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/name/ZoologicalNameCacheStrategyTest.java -text
@@ -1169,6 +1202,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/BookSection
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/CdDvdDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/GenericDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/ReferenceTypeTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/reference/WebPageDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/taxon/TaxonBaseDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/generate/IdentificationKeyGeneratorTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/match/DefaultMatchStrategyTest.java -text
@@ -1178,6 +1212,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/NonViralNameParserIm
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/ParserProblemTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/TimePeriodParserTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/location/CoordinateConverterTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/BigDecimalTesting.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestFullReferenceParser.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestModel.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestRegExs.java -text
@@ -1197,7 +1232,13 @@ cdmlib-persistence/LICENSE.TXT -text
 cdmlib-persistence/README.TXT -text
 cdmlib-persistence/pom.xml -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationUtils.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmPersistentSourceUtils.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmPersistentXMLSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/CdmSourceException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/Configuration.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/ICdmPersistentSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/config/ICdmSource.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSource.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSourceBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmPersistentDataSource.java -text
@@ -1208,7 +1249,6 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DataSourceReloader.ja
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DatabaseSchemaMismatchException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DatabaseTypeEnum.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DbSchemaValidation.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/EvaluationFailedException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/H2DbSupport.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/H2Mode.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/ICdmDataSource.java -text
@@ -1216,6 +1256,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/LocalH2.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/LocalHsqldb.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/NamedContextHolder.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/NomenclaturalCodeAwareDataSource.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/PermissionDeniedException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/PersistentTermInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/UpdatableRoutingDataSource.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/DatabaseTypeBase.java -text
@@ -1232,6 +1273,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2005Da
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SqlServer2008DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SybaseDatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/AuditedSchemaUpdaterStepBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/CaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/CdmUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ClassChanger.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ColumnAdder.java -text
@@ -1263,6 +1305,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UniqueIndexDro
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UpdaterBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/VocabularyCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/permissions/PermissionsUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/test/ValidateForeignKeys.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/SchemaUpdater_24_25.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/TermUpdater_24_25.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/FeatureNodeTreeColumnUpdater.java -text
@@ -1278,11 +1321,17 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpd
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_313_314.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_314_315.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_31_311.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/ClassificationRootNodeUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/RankClassUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SchemaUpdater_31_33.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SchemaUpdater_33_331.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SpecimenMediaMoverUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/TermUpdater_31_33.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/TermVocabularyRepresentationUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v33_34/SchemaUpdater_331_34.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v33_34/SchemaUpdater_34_341.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v33_34/TermUpdater_33_34.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v33_34/UsernameConstraintUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IAlternativeSpellingSuggestionParser.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/IMethodCache.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/MethodCacheImpl.java -text
@@ -1362,6 +1411,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/desc
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/AmplificationDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/PrimerDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/molecular/SequenceDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/HomotypicalGroupDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/NomenclaturalStatusDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TaxonNameDaoHibernateImpl.java -text
@@ -1390,6 +1442,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/initializer/Ty
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationPartDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/IAmplificationDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/IPrimerDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/molecular/ISequenceDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/IHomotypicalGroupDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/INomenclaturalStatusDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/ITaxonNameDao.java -text
@@ -1401,6 +1456,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/statistics/ISt
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/IClassificationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonNodeDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/LogicFilter.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/TaxonNodeFilter.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/tmp/TaxonNodeFilterDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/fetch/CdmFetch.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGenerator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CdmDataChangeEvent.java -text
@@ -1421,16 +1479,21 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permissi
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/CdmAuthority.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/CdmPermissionClass.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/CdmPermissionEvaluator.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/ICdmPermissionEvaluator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/IGrantedAuthorityConverter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/Operation.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/Role.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/SecurityExceptionUtils.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/UnanimousBasedUnrevokable.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/CdmPermissionVoter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/DescriptionBaseVoter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/DescriptionElementVoter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/GrantAlwaysVoter.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/ReferenceVoter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/TaxonBaseVoter.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/TaxonNameBaseVoter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/TaxonNodeVoter.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/permission/voter/TeamOrPersonBaseVoter.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/replace/ReferringObjectMetadata.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/replace/ReferringObjectMetadataFactory.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/replace/impl/ListReferringObjectMetadata.java -text
@@ -1511,11 +1574,14 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/stat
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplBenchmark.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/tmp/TaxonNodeFilterDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDaoTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permission/CdmAuthorityTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permission/CdmPermissionClassTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/CdmDeleteListenerTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/replace/ReferringObjectMetadataFactoryTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/profiler/ProfileController.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/profiler/ProfilerController.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestCdmApplicationUtils.java -text
@@ -1604,6 +1670,9 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testFindDeleted.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.testSortindexForJavassist-result.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.testSortindexForJavassist.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.testSortindexForJavassist2-result.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDaoTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.testOnSaveOrUpdateAgents-result.xml -text
@@ -1677,30 +1746,10 @@ cdmlib-remote-webapp/ide/eclipse/cdmlib-remote[!!-~]-[!!-~]remote[!!-~]debug[!!-
 cdmlib-remote-webapp/ide/eclipse/cdmlib-remote-webapp[!!-~]-[!!-~]profile.launch -text
 cdmlib-remote-webapp/ide/eclipse/cdmlib-remote-webapp[!!-~]-[!!-~]run.launch -text
 cdmlib-remote-webapp/pom.xml -text
+cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/config/PreloadedBeans.java -text
+cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/config/SpringMVCConfig.java -text
 cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/vaadin/redlist/wigetset/AppWidgetSet.gwt.xml -text
-cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/webapp/view/ui/EditWindow.java -text
-cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/webapp/view/ui/ExportWindow.java -text
-cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/webapp/view/ui/HelloWorld.java -text
-cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/webapp/view/ui/LoginWindow.java -text
-cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/webapp/view/ui/wizard/FourthStep.java -text
-cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/webapp/view/ui/wizard/IntroStep.java -text
-cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/webapp/view/ui/wizard/SetupStep.java -text
-cdmlib-remote-webapp/src/main/java/eu/etaxonomy/cdm/remote/webapp/view/ui/wizard/ThirdStep.java -text
 cdmlib-remote-webapp/src/main/resources/log4j.properties -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43EFBF8 -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F2D15 -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F3094 -text
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-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F323A -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F3AB3 -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F3B0E -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F5054 -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F51B1 -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F5288 -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F5293 -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C43F5393 -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C499CE54 -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/gwt-unitCache/gwt-unitCache-00000143C499EFE0 -text
 cdmlib-remote-webapp/src/main/webapp/VAADIN/themes/mytheme/favicon.ico -text
 cdmlib-remote-webapp/src/main/webapp/VAADIN/themes/mytheme/icons/32/Thumbs.db -text
 cdmlib-remote-webapp/src/main/webapp/VAADIN/themes/mytheme/icons/32/VLineSeparator.png -text
@@ -1760,130 +1809,6 @@ cdmlib-remote-webapp/src/main/webapp/VAADIN/themes/mytheme/images/gradient.png -
 cdmlib-remote-webapp/src/main/webapp/VAADIN/themes/mytheme/images/logo.png -text
 cdmlib-remote-webapp/src/main/webapp/VAADIN/themes/mytheme/images/table-header-bg.png -text
 cdmlib-remote-webapp/src/main/webapp/VAADIN/themes/mytheme/styles.css -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/widgetsets/WEB-INF/deploy/eu.etaxonomy.cdm.remote.vaadin.redlist.widgetset.AppWidgetSet/rpcPolicyManifest/manifest.txt -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/widgetsets/WEB-INF/deploy/eu.etaxonomy.cdm.remote.vaadin.redlist.widgetset.AppWidgetSet/symbolMaps/0C6D94674FC6222938C302076AE3CF90.symbolMap -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/widgetsets/WEB-INF/deploy/eu.etaxonomy.cdm.remote.vaadin.redlist.widgetset.AppWidgetSet/symbolMaps/4FCC439B0A58B0755F53E4E77CD1F7FF.symbolMap -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/widgetsets/WEB-INF/deploy/eu.etaxonomy.cdm.remote.vaadin.redlist.widgetset.AppWidgetSet/symbolMaps/AF7DC419E274EF3BAB5AC7E4BE4F0DB2.symbolMap -text
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-cdmlib-remote-webapp/src/main/webapp/VAADIN/widgetsets/eu.etaxonomy.cdm.remote.vaadin.widgetset.AppWidgetSet/deferredjs/CF251291184015864E625C88DC25C26B/7.cache.js -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/widgetsets/eu.etaxonomy.cdm.remote.vaadin.widgetset.AppWidgetSet/eu.etaxonomy.cdm.remote.vaadin.widgetset.AppWidgetSet.devmode.js -text
-cdmlib-remote-webapp/src/main/webapp/VAADIN/widgetsets/eu.etaxonomy.cdm.remote.vaadin.widgetset.AppWidgetSet/eu.etaxonomy.cdm.remote.vaadin.widgetset.AppWidgetSet.nocache.js -text
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/applicationContext.views.xml -text
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/applicationContext.xml -text
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/cdmlib-remote-servlet.xml -text
@@ -1893,7 +1818,6 @@ cdmlib-remote-webapp/src/main/webapp/WEB-INF/datasources/empty-default-datasourc
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/datasources/p6spy.xml -text
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/datasources/routing-datasource.xml -text
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/json-views.xml -text
-cdmlib-remote-webapp/src/main/webapp/WEB-INF/jsp/index.jsp -text
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/oai-views.xml -text
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/rdf-views.xml -text
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/web.xml -text
@@ -1916,6 +1840,7 @@ cdmlib-remote-webapp/src/main/webapp/css/jquery-ui/images/ui-icons_888888_256x24
 cdmlib-remote-webapp/src/main/webapp/css/jquery-ui/images/ui-icons_cd0a0a_256x240.png -text
 cdmlib-remote-webapp/src/main/webapp/css/jquery-ui/jquery-ui-1.8.23.custom.css -text
 cdmlib-remote-webapp/src/main/webapp/csv/csvExport.jsp -text
+cdmlib-remote-webapp/src/main/webapp/index.html -text
 cdmlib-remote-webapp/src/main/webapp/js/cdm_ws_progress.js -text
 cdmlib-remote-webapp/src/main/webapp/js/csv_export.js -text
 cdmlib-remote-webapp/src/main/webapp/js/jquery-1.7.2.min.js -text
@@ -1928,7 +1853,15 @@ cdmlib-remote-webapp/src/main/webapp/xsl/name.xsl -text
 cdmlib-remote-webapp/src/main/webapp/xsl/oai2.xsl -text
 cdmlib-remote-webapp/src/main/webapp/xsl/statistics.xsl -text
 cdmlib-remote-webapp/src/main/webapp/xsl/taxon.xsl -text
-cdmlib-remote-webapp/src/test/java/eu/etaxonomy/AppTest.java -text
+cdmlib-remote-webapp/src/test/java/eu/etaxonomy/cdm/remote/ClassificationIT.java -text
+cdmlib-remote-webapp/src/test/resources/datasources.xml -text
+cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty-http.xml -text
+cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty-https.xml -text
+cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty-ssl.xml -text
+cdmlib-remote-webapp/src/test/resources/etc/jetty/jetty.xml -text
+cdmlib-remote-webapp/src/test/resources/h2/cdmTest.h2.db -text svneol=unset#unset
+cdmlib-remote-webapp/src/test/resources/log4j.properties -text
+cdmlib-remote/.springBeans -text
 cdmlib-remote/LICENSE.TXT -text
 cdmlib-remote/README.TXT -text
 cdmlib-remote/pom.xml -text
@@ -1992,13 +1925,15 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonListControll
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonNodeController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonNodeListController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonPortalController.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonPortalListController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TermController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TermListController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/VocabularyController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/VocabularyListController.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/csv/CsvDemoController.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/csv/CsvExportController.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/checklist/ChecklistDemoController.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/checklist/CsvExportController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/dto/NameCatalogueController.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/dto/OccurrenceCatalogueController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/dto/PolytomousKeyNodeDtoController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ext/ExternalBhleController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ext/ExternalGeoController.java -text
@@ -2061,12 +1996,12 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/SetSpec.java -tex
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/Status.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/Verb.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/oaipmh/package-info.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/occurrencecatalogue/OccurrenceSearch.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/package.html -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/AbstractLinkDto.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/LinkedPolytomousKeyNodeRowDto.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/PolytomousKeyNodeLinkDto.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/polytomouskey/TaxonLinkDto.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/redlist/RedlistDTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/Actor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/BaseThing.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/Concept.java -text
@@ -2087,6 +2022,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/TaxonConcept.ja
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/TaxonName.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/TaxonRelationshipTerm.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/tdwg/voc/Team.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/vaadin/CdmTaxonTableCollection.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/CdmTypePropertyEditor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/DateTimeEditor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/DefinedTermBaseList.java -text
@@ -2157,20 +2093,32 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/CdmObjectNonExisting
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/DataController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/MetadataController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/Utils.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/SpringContextHelper.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/VaadinConfigurer.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/VaaditorUI.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/VaadinUI.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/CellRendererTable.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/ClassificationSelectionForm.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/DemoTaxonTable.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/DetailWindow.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/DistributionSelectionForm.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/HorizontalToolbar.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/LoginForm.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/components/TaxonTableDTO.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/redlist/views/BfnView.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/redlist/views/DashBoardView.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/redlist/views/ErrorView.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/redlist/views/LoginView.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/service/AuthenticationService.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/data/LazyLoadedContainer.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/data/LazyLoadedIndexedContainer.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/service/CdmVaadinServlet.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/service/VaadinAuthenticationService.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/disabled/DefaultView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/BfnView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/ClassificationSelectorView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/DashBoardView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/DistributionSelectorView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/ErrorView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/uiset/redlist/views/LoginView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/vaadin/widgetset/AppWidgetSet.gwt.xml -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/BaseView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/CsvFileDownloadView.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/FileDownloadView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/HtmlView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/JsonView.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/OaiPmhResponseView.java -text
@@ -2193,6 +2141,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/oaipmh/rdf/ListRecordsV
 cdmlib-remote/src/main/java/eu/etaxonomy/remote/dto/rdf/Rdf.java -text
 cdmlib-remote/src/main/java/net/sf/json/CycleSetAcess.java -text
 cdmlib-remote/src/main/java/ru/xpoft/vaadin/CdmDiscoveryNavigator.java -text
+cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote-security.xml -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote.xml -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/dwc/mappings.xml -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/oaipmh/mappings.xml -text
@@ -2203,10 +2152,12 @@ cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/tdwg/mappings.xml -
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/ehcache.xml -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/json/jsonConfigurations.xml -text
 cdmlib-remote/src/main/resources/log4j.properties -text
+cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/controller/util/CdmAntPathMatcherTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/assembler/lsid/AssemblerTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/AuthorityControllerTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/DataControllerTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/MetadataControllerTest.java -text
+cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/JsonToCsvViewTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/OaiPmhViewTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/view/RdfViewTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/test/function/GenericRemoteTester.java -text
@@ -2230,7 +2181,10 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/FirstDataInserter
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/ICdmApplicationConfiguration.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/MonitoredGenericApplicationContext.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/MonitoredListableBeanFactory.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/cache/CdmCacher.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/cache/CdmTermCacher.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/ConversationHolder.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/ConversationHolderMock.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/IConversationEnabled.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacade.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategy.java -text
@@ -2328,14 +2282,19 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IFindTaxaAndNa
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IIdentifiableEntityServiceConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IdentifiableServiceConfiguratorFactory.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IdentifiableServiceConfiguratorImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/IncludedTaxonConfiguration.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/MatchingTaxonConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/NameDeletionConfigurator.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/SpecimenDeleteConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/SynonymDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonBaseDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TaxonNodeDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/TermDeletionConfigurator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/description/TransmissionEngineDistribution.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/DerivateHierarchyDTO.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/DistributionInfoDTO.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/dto/IncludedTaxaDTO.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/DataChangeNoRollbackException.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/HomotypicalGroupChangeException.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/exception/ReferencedObjectUndeletableException.java -text
@@ -2355,6 +2314,12 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/LsidWsdlWra
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/LsidWsdlWrapperImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/Pattern.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/lsid/impl/TaxonMetadataMapper.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/AmplificationServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/IAmplificationService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/IPrimerService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/ISequenceService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/PrimerServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/molecular/SequenceServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/Pager.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/PagerUtils.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/pager/impl/AbstractPagerImpl.java -text
@@ -2385,6 +2350,8 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/utility/ImagesUtility.java -t
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/validation/constraint/NoDuplicateNamesValidator.java -text
 cdmlib-services/src/main/java/org/apache/lucene/search/MultiCollector.java -text
 cdmlib-services/src/main/resources/eu/etaxonomy/cdm/defaultApplicationContext.xml -text
+cdmlib-services/src/main/resources/eu/etaxonomy/cdm/httpInvokerServices.xml -text
+cdmlib-services/src/main/resources/eu/etaxonomy/cdm/remoting-services.xml -text
 cdmlib-services/src/main/resources/eu/etaxonomy/cdm/services.xml -text
 cdmlib-services/src/main/resources/eu/etaxonomy/cdm/services_security.xml -text
 cdmlib-services/src/main/resources/eu/etaxonomy/cdm/validation/name/TaxonNameBase-Constraints.xml -text
@@ -2398,17 +2365,23 @@ cdmlib-services/src/main/resources/wsdl/LSIDDataServiceHTTPBindings.wsdl -text
 cdmlib-services/src/main/resources/wsdl/LSIDDataServiceSOAPBindings.wsdl -text
 cdmlib-services/src/main/resources/wsdl/LSIDPortTypes.wsdl -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/application/FirstDataInserterTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/cache/CdmCacherTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/cache/MockCdmCacher.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldUnitCacheStrategyTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/AbstractSecurityTestBase.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/ClassificationServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/CommonServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/DescriptionServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/FeatureNodeServiceImplTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/GroupServiceImplTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/HandlingCdmEntitiesTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentifiableServiceBaseTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentificationKeyGeneratorTTT.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGeneratorTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/OccurrenceServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PolytomousKeyNodeServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/PreferenceServiceImplTest.java -text
@@ -2422,12 +2395,17 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TermServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TransmissionEngineDistributionTest.java -text
-cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/UserServiceImplTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/UserAndGroupServiceImplTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/VocabularyServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDAuthorityServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDDataServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDMetadataServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDRegistryTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/AmplificationServiceTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/PrimerServiceTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/molecular/SequenceServiceTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/pager/PagerTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/utility/DescriptionUtilityTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/scripts/FixMultipleTextDataInImageGalleries.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/example/ApplicationExample.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/ConcurrentSessionTest.java -text
@@ -2462,10 +2440,14 @@ cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/BlankDataSet.xml
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/ClassificationServiceImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/CommonServiceImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/FeatureNodeServiceImplTest-indexing.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/HandlingCdmEntitiesTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/IdentifiableServiceBaseTest.testUpdateTitleCache-result.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/IdentifiableServiceBaseTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/MediaDaoImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/NameServiceImplTest.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/OccurenceServiceTest.move.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/OccurrenceService.loadData.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/OccurrenceServiceTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/OregonScientificDS6639-DSC_0307-small.jpg -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/OregonScientificDS6639-DSC_0307-small.tif -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImplTest.xml -text
@@ -2481,7 +2463,6 @@ cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TaxonServiceImpl
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TermServiceImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TransmissionEngineDistributionTest.xml -text
-cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/UserServiceImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/lsid/LSIDAuthorityServiceTest.testGetAuthorityWSDL-result.wsdl -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/lsid/LSIDAuthorityServiceTest.testGetAvailableServices.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/lsid/LSIDAuthorityServiceTest.testGetAvailableServicesWithKnownLSID-result.wsdl -text
@@ -2523,15 +2504,21 @@ src/site/apt/index.apt -text
 src/site/apt/oai-pmh.apt -text
 src/site/apt/overview.apt -text
 src/site/apt/reference.apt -text
+src/site/apt/remote/checklist-catalogue-default.apt -text
+src/site/apt/remote/checklist-catalogue-export.apt -text
+src/site/apt/remote/checklist-catalogue-exportCSV.apt -text
+src/site/apt/remote/checklist-catalogue-flockSearch.apt -text
 src/site/apt/remote/name-catalogue-accepted.apt -text
 src/site/apt/remote/name-catalogue-default.apt -text
 src/site/apt/remote/name-catalogue-fuzzy.apt -text
 src/site/apt/remote/name-catalogue-name-info.apt -text
 src/site/apt/remote/name-catalogue-taxon-info.apt -text
+src/site/apt/remote/occurrence-catalogue-default.apt -text
 src/site/apt/remote/search-fulltext-info.apt -text
 src/site/apt/remote/search-name-default.apt -text
 src/site/apt/remote/search-taxon-info.apt -text
 src/site/apt/rest-api-name-catalogue.apt -text
+src/site/apt/rest-api-occurrence-catalogue.apt -text
 src/site/apt/rest-api-search.apt -text
 src/site/apt/rest-api-statistics.apt -text
 src/site/apt/rest-api.apt -text
@@ -2541,3 +2528,4 @@ src/site/resources/images/cdm-server-oai-pmh.png -text
 src/site/resources/images/cdmlib-arch4.png -text
 src/site/resources/images/cdmlib_overview.png -text
 src/site/site.xml -text
+src/test/resources/h2/cdmTest.h2.db -text svneol=unset#unset