+// $Id$\r
+/**\r
+* Copyright (C) 2007 EDIT\r
+* European Distributed Institute of Taxonomy \r
+* http://www.e-taxonomy.eu\r
+* \r
+* The contents of this file are subject to the Mozilla Public License Version 1.1\r
+* See LICENSE.TXT at the top of this package for the full license terms.\r
+*/\r
+\r
package eu.etaxonomy.cdm.api.service;\r
\r
+import java.util.ArrayList;\r
+import java.util.Collection;\r
+import java.util.List;\r
+import java.util.Map;\r
+import java.util.Set;\r
+import java.util.UUID;\r
+\r
import org.apache.log4j.Logger;\r
import org.springframework.beans.factory.annotation.Autowired;\r
+import org.springframework.beans.factory.annotation.Qualifier;\r
import org.springframework.stereotype.Service;\r
import org.springframework.transaction.annotation.Transactional;\r
\r
+import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;\r
+import eu.etaxonomy.cdm.api.service.config.INameServiceConfigurator;\r
+import eu.etaxonomy.cdm.api.service.pager.Pager;\r
+import eu.etaxonomy.cdm.api.service.pager.impl.DefaultPagerImpl;\r
+import eu.etaxonomy.cdm.model.common.Annotation;\r
+import eu.etaxonomy.cdm.model.common.CdmBase;\r
+import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;\r
+import eu.etaxonomy.cdm.model.common.ReferencedEntityBase;\r
+import eu.etaxonomy.cdm.model.common.RelationshipBase;\r
+import eu.etaxonomy.cdm.model.common.RelationshipTermBase;\r
import eu.etaxonomy.cdm.model.common.TermVocabulary;\r
-import eu.etaxonomy.cdm.model.name.*;\r
+import eu.etaxonomy.cdm.model.common.UuidAndTitleCache;\r
+import eu.etaxonomy.cdm.model.name.BotanicalName;\r
+import eu.etaxonomy.cdm.model.name.HomotypicalGroup;\r
+import eu.etaxonomy.cdm.model.name.HybridRelationship;\r
+import eu.etaxonomy.cdm.model.name.HybridRelationshipType;\r
+import eu.etaxonomy.cdm.model.name.NameRelationship;\r
+import eu.etaxonomy.cdm.model.name.NameRelationshipType;\r
+import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;\r
+import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;\r
+import eu.etaxonomy.cdm.model.name.NonViralName;\r
+import eu.etaxonomy.cdm.model.name.Rank;\r
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
+import eu.etaxonomy.cdm.model.name.TypeDesignationBase;\r
+import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;\r
+import eu.etaxonomy.cdm.model.name.TypeDesignationStatusBase;\r
import eu.etaxonomy.cdm.model.taxon.TaxonBase;\r
+import eu.etaxonomy.cdm.persistence.dao.common.IOrderedTermVocabularyDao;\r
+import eu.etaxonomy.cdm.persistence.dao.common.IReferencedEntityDao;\r
+import eu.etaxonomy.cdm.persistence.dao.common.ITermVocabularyDao;\r
+import eu.etaxonomy.cdm.persistence.dao.name.IHomotypicalGroupDao;\r
+import eu.etaxonomy.cdm.persistence.dao.name.INomenclaturalStatusDao;\r
import eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao;\r
-\r
-\r
-import java.util.Collection;\r
-import java.util.HashMap;\r
-import java.util.Iterator;\r
-import java.util.List;\r
-import java.util.Map;\r
-import java.util.UUID;\r
+import eu.etaxonomy.cdm.persistence.dao.name.ITypeDesignationDao;\r
+import eu.etaxonomy.cdm.persistence.query.MatchMode;\r
+import eu.etaxonomy.cdm.persistence.query.OrderHint;\r
\r
\r
@Service\r
@Transactional(readOnly = true)\r
-public class NameServiceImpl extends IdentifiableServiceBase<TaxonNameBase> implements INameService {\r
- static Logger logger = Logger.getLogger(NameServiceImpl.class);\r
+public class NameServiceImpl extends IdentifiableServiceBase<TaxonNameBase,ITaxonNameDao> implements INameService {\r
+ static private final Logger logger = Logger.getLogger(NameServiceImpl.class);\r
\r
@Autowired\r
- protected void setDao(ITaxonNameDao dao) {\r
- this.dao = dao;\r
- }\r
+ protected ITermVocabularyDao vocabularyDao;\r
+ @Autowired\r
+ protected IOrderedTermVocabularyDao orderedVocabularyDao;\r
+ @Autowired\r
+ @Qualifier("refEntDao")\r
+ protected IReferencedEntityDao<ReferencedEntityBase> referencedEntityDao;\r
+ @Autowired\r
+ private INomenclaturalStatusDao nomStatusDao;\r
+ @Autowired\r
+ private ITypeDesignationDao typeDesignationDao;\r
+ @Autowired\r
+ private IHomotypicalGroupDao homotypicalGroupDao;\r
\r
+ /**\r
+ * Constructor\r
+ */\r
public NameServiceImpl(){\r
- logger.info("Load NameService Bean");\r
+ if (logger.isDebugEnabled()) { logger.debug("Load NameService Bean"); }\r
}\r
\r
+//********************* METHODS ****************************************************************// \r
+ \r
public List getNamesByName(String name){\r
return super.findCdmObjectsByTitle(name);\r
}\r
+ \r
+ public List<NonViralName> getNamesByNameCache(String nameCache){\r
+ List result = dao.findByName(nameCache, MatchMode.EXACT, null, null, null, null);\r
+ return result;\r
+ }\r
+ \r
+ public List getNamesByName(String name, CdmBase sessionObject){\r
+ return super.findCdmObjectsByTitle(name, sessionObject);\r
+ }\r
\r
- public TaxonNameBase getTaxonNameByUuid(UUID uuid) {\r
+ public List findNamesByTitle(String title){\r
+ return super.findCdmObjectsByTitle(title);\r
+ }\r
+ \r
+ public List findNamesByTitle(String title, CdmBase sessionObject){\r
+ return super.findCdmObjectsByTitle(title, sessionObject);\r
+ }\r
+ \r
+ public List<TaxonNameBase> findByTitle(IIdentifiableEntityServiceConfigurator config) {\r
+ return super.findByTitle(config);\r
+ }\r
+ \r
+ public TaxonNameBase<?,?> getTaxonNameByUuid(UUID uuid) {\r
return super.getCdmObjectByUuid(uuid);\r
}\r
\r
}\r
\r
@Transactional(readOnly = false)\r
- //TODO generic\r
- public Map<UUID, TaxonNameBase> saveTaxonNameAll(Collection<TaxonNameBase> taxonNameCollection){\r
- Map<UUID, TaxonNameBase> resultMap = new HashMap<UUID, TaxonNameBase>();\r
- Iterator<TaxonNameBase> iterator = taxonNameCollection.iterator();\r
- while(iterator.hasNext()){\r
- TaxonNameBase taxonNameBase = iterator.next();\r
- UUID uuid = saveTaxonName(taxonNameBase);\r
- resultMap.put(uuid, taxonNameBase);\r
- }\r
- return resultMap;\r
+ public Map<UUID, TaxonNameBase> saveTaxonNameAll(Collection<? extends TaxonNameBase> taxonNameCollection){\r
+ return saveCdmObjectAll(taxonNameCollection);\r
+ }\r
+ \r
+ @Transactional(readOnly = false)\r
+ public Map<UUID, HomotypicalGroup> saveAllHomotypicalGroups(Collection<HomotypicalGroup> homotypicalGroups){\r
+ return homotypicalGroupDao.saveAll(homotypicalGroups);\r
+ }\r
+ \r
+ @Transactional(readOnly = false)\r
+ public Map<UUID, TypeDesignationBase> saveTypeDesignationAll(Collection<TypeDesignationBase> typeDesignationCollection){\r
+ return typeDesignationDao.saveAll(typeDesignationCollection);\r
+ }\r
+\r
+ @Transactional(readOnly = false)\r
+ public Map<UUID, ReferencedEntityBase> saveReferencedEntitiesAll(Collection<ReferencedEntityBase> referencedEntityCollection){\r
+ return referencedEntityDao.saveAll(referencedEntityCollection);\r
}\r
\r
@Transactional(readOnly = false)\r
- public UUID removeTaxon(TaxonNameBase taxonName) {\r
+ public UUID removeTaxonName(TaxonNameBase taxonName) {\r
return super.removeCdmObject(taxonName);\r
}\r
\r
return dao.list(limit, start);\r
}\r
\r
- public TermVocabulary getRankEnumeration() {\r
+ public List<NomenclaturalStatus> getAllNomenclaturalStatus(int limit, int start){\r
+ return nomStatusDao.list(limit, start);\r
+ }\r
+ \r
+ public List<TypeDesignationBase> getAllTypeDesignations(int limit, int start){\r
+ return typeDesignationDao.getAllTypeDesignations(limit, start);\r
+ }\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * homotypicalGroupService.list\r
+ */\r
+ public List<HomotypicalGroup> getAllHomotypicalGroups(int limit, int start){\r
+ return homotypicalGroupDao.list(limit, start);\r
+ }\r
+ \r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * remove\r
+ */\r
+ @Deprecated\r
+ public List<RelationshipBase> getAllRelationships(int limit, int start){\r
+ return dao.getAllRelationships(limit, start);\r
+ }\r
+ \r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.Rank) \r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getRankVocabulary()\r
+ */\r
+ public OrderedTermVocabulary<Rank> getRankVocabulary() {\r
+ String uuidString = "ef0d1ce1-26e3-4e83-b47b-ca74eed40b1b";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ OrderedTermVocabulary<Rank> rankVocabulary = \r
+ (OrderedTermVocabulary)orderedVocabularyDao.findByUuid(uuid);\r
+ return rankVocabulary;\r
+ }\r
+\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.NameRelationshipType) \r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getNameRelationshipTypeVocabulary()\r
+ */\r
+ public TermVocabulary<NameRelationshipType> getNameRelationshipTypeVocabulary() {\r
+ String uuidString = "6878cb82-c1a4-4613-b012-7e73b413c8cd";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ TermVocabulary<NameRelationshipType> nameRelTypeVocabulary = \r
+ (TermVocabulary)vocabularyDao.findByUuid(uuid);\r
+ return nameRelTypeVocabulary;\r
+ }\r
+\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.StatusType) \r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getStatusTypeVocabulary()\r
+ */\r
+ public TermVocabulary<NomenclaturalStatusType> getStatusTypeVocabulary() {\r
+ String uuidString = "bb28cdca-2f8a-4f11-9c21-517e9ae87f1f";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ TermVocabulary<NomenclaturalStatusType> nomStatusTypeVocabulary = \r
+ (TermVocabulary)vocabularyDao.findByUuid(uuid);\r
+ return nomStatusTypeVocabulary;\r
+ }\r
+\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.SpecimenTypeDesignationStatus) \r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()\r
+ */\r
+ public TermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationStatusVocabulary() {\r
+ String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ TermVocabulary<SpecimenTypeDesignationStatus> typeDesigStatusVocabulary = \r
+ (TermVocabulary)vocabularyDao.findByUuid(uuid);\r
+ return typeDesigStatusVocabulary;\r
+ }\r
+ \r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.SpecimenTypeDesignationStatus)\r
+ * and also seems to duplicate the above method, differing only in the DAO used and the return type \r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()\r
+ */\r
+ public OrderedTermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationVocabulary() {\r
+ String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ OrderedTermVocabulary<SpecimenTypeDesignationStatus> typeDesignationVocabulary = \r
+ (OrderedTermVocabulary)orderedVocabularyDao.findByUuid(uuid);\r
+ return typeDesignationVocabulary;\r
+ }\r
+\r
+ public void generateTitleCache() {\r
+ logger.warn("Not yet implemented");\r
// TODO Auto-generated method stub\r
- return null;\r
}\r
\r
+ @Autowired\r
+ protected void setDao(ITaxonNameDao dao) {\r
+ this.dao = dao;\r
+ }\r
+\r
+ public Pager<HybridRelationship> getHybridNames(BotanicalName name, HybridRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countHybridNames(name, type);\r
+ \r
+ List<HybridRelationship> results = new ArrayList<HybridRelationship>();\r
+ if(numberOfResults > 0) { // no point checking again\r
+ results = dao.getHybridNames(name, type, pageSize, pageNumber,orderHints,propertyPaths); \r
+ }\r
+ \r
+ return new DefaultPagerImpl<HybridRelationship>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+ \r
+ public List<NameRelationship> listFromNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedFrom, type);\r
+ \r
+ List<NameRelationship> results = new ArrayList<NameRelationship>();\r
+ if(numberOfResults > 0) { // no point checking again\r
+ results = dao.getNameRelationships(name, NameRelationship.Direction.relatedFrom, type, pageSize, pageNumber, orderHints, propertyPaths); \r
+ }\r
+ return results;\r
+ }\r
+\r
+ public Pager<NameRelationship> pageFromNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedFrom, type);\r
+ \r
+ List<NameRelationship> results = new ArrayList<NameRelationship>();\r
+ if(numberOfResults > 0) { // no point checking again\r
+ results = dao.getNameRelationships(name, NameRelationship.Direction.relatedFrom, type, pageSize, pageNumber, orderHints, propertyPaths); \r
+ }\r
+ return new DefaultPagerImpl<NameRelationship>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+ \r
+ public List<NameRelationship> listToNameRelationships(TaxonNameBase name, NameRelationshipType type,\r
+ Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+\r
+ Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedTo, type);\r
+\r
+ List<NameRelationship> results = new ArrayList<NameRelationship>();\r
+ if (numberOfResults > 0) { // no point checking again\r
+ results = dao.getNameRelationships(name, NameRelationship.Direction.relatedTo, type, pageSize, pageNumber,\r
+ orderHints, propertyPaths);\r
+ }\r
+ return results;\r
+ }\r
+ \r
+ public Pager<NameRelationship> pageToNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedTo, type);\r
+\r
+ List<NameRelationship> results = new ArrayList<NameRelationship>();\r
+ if (numberOfResults > 0) { // no point checking again\r
+ results = dao.getNameRelationships(name, NameRelationship.Direction.relatedTo, type, pageSize, pageNumber,\r
+ orderHints, propertyPaths);\r
+ }\r
+\r
+ return new DefaultPagerImpl<NameRelationship>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+\r
+ \r
+ public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name, SpecimenTypeDesignationStatus status, \r
+ Integer pageSize, Integer pageNumber) { \r
+ return getTypeDesignations(name, status, pageSize, pageNumber, null);\r
+ }\r
+ \r
+ public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name, SpecimenTypeDesignationStatus status, \r
+ Integer pageSize, Integer pageNumber, List<String> propertyPaths){\r
+ Integer numberOfResults = dao.countTypeDesignations(name, status);\r
+ \r
+ List<TypeDesignationBase> results = new ArrayList<TypeDesignationBase>();\r
+ if(numberOfResults > 0) { // no point checking again\r
+ results = dao.getTypeDesignations(name, status, pageSize, pageNumber, propertyPaths); \r
+ }\r
+ \r
+ return new DefaultPagerImpl<TypeDesignationBase>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+ \r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * rename search\r
+ */\r
+ public Pager<TaxonNameBase> searchNames(String uninomial,String infraGenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints,\r
+ List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank);\r
+ \r
+ List<TaxonNameBase> results = new ArrayList<TaxonNameBase>();\r
+ if(numberOfResults > 0) { // no point checking again\r
+ results = dao.searchNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber, orderHints, propertyPaths); \r
+ }\r
+ \r
+ return new DefaultPagerImpl<TaxonNameBase>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+ \r
+ public Pager<TaxonNameBase> search(Class<? extends TaxonNameBase> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.count(clazz,queryString);\r
+ \r
+ List<TaxonNameBase> results = new ArrayList<TaxonNameBase>();\r
+ if(numberOfResults > 0) { // no point checking again\r
+ results = dao.search(clazz,queryString, pageSize, pageNumber, orderHints, propertyPaths); \r
+ }\r
+ \r
+ return new DefaultPagerImpl<TaxonNameBase>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getUuidAndTitleCacheOfNames()\r
+ */\r
+ public List<UuidAndTitleCache> getUuidAndTitleCacheOfNames() {\r
+ return dao.getUuidAndTitleCacheOfNames();\r
+ }\r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)\r
+ */\r
+ public <TYPE extends TaxonNameBase> Pager<TYPE> list(Class<TYPE> type,\r
+ Integer pageSize, Integer pageNumber, List<OrderHint> orderHints,\r
+ List<String> propertyPaths) {\r
+ // TODO Auto-generated method stub\r
+ return null;\r
+ }\r
}\r
BGBM BDI Projects / cdmlib.git / blobdiff