+// $Id$\r
/**\r
* Copyright (C) 2007 EDIT\r
* European Distributed Institute of Taxonomy \r
import java.util.UUID;\r
\r
import org.apache.log4j.Logger;\r
+import org.hibernate.criterion.Criterion;\r
import org.springframework.beans.factory.annotation.Autowired;\r
import org.springframework.beans.factory.annotation.Qualifier;\r
import org.springframework.stereotype.Service;\r
+import org.springframework.transaction.annotation.Propagation;\r
import org.springframework.transaction.annotation.Transactional;\r
\r
+import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;\r
import eu.etaxonomy.cdm.api.service.pager.Pager;\r
import eu.etaxonomy.cdm.api.service.pager.impl.DefaultPagerImpl;\r
-import eu.etaxonomy.cdm.model.common.Annotation;\r
import eu.etaxonomy.cdm.model.common.CdmBase;\r
import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;\r
import eu.etaxonomy.cdm.model.common.ReferencedEntityBase;\r
-import eu.etaxonomy.cdm.model.common.RelationshipTermBase;\r
+import eu.etaxonomy.cdm.model.common.RelationshipBase;\r
import eu.etaxonomy.cdm.model.common.TermVocabulary;\r
-import eu.etaxonomy.cdm.model.name.BotanicalName;\r
+import eu.etaxonomy.cdm.model.common.UuidAndTitleCache;\r
import eu.etaxonomy.cdm.model.name.HomotypicalGroup;\r
import eu.etaxonomy.cdm.model.name.HybridRelationship;\r
import eu.etaxonomy.cdm.model.name.HybridRelationshipType;\r
import eu.etaxonomy.cdm.model.name.NameRelationshipType;\r
import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;\r
import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;\r
+import eu.etaxonomy.cdm.model.name.NonViralName;\r
import eu.etaxonomy.cdm.model.name.Rank;\r
+import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;\r
import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
import eu.etaxonomy.cdm.model.name.TypeDesignationBase;\r
-import eu.etaxonomy.cdm.model.name.TypeDesignationStatus;\r
import eu.etaxonomy.cdm.persistence.dao.common.IOrderedTermVocabularyDao;\r
import eu.etaxonomy.cdm.persistence.dao.common.IReferencedEntityDao;\r
import eu.etaxonomy.cdm.persistence.dao.common.ITermVocabularyDao;\r
import eu.etaxonomy.cdm.persistence.dao.name.INomenclaturalStatusDao;\r
import eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao;\r
import eu.etaxonomy.cdm.persistence.dao.name.ITypeDesignationDao;\r
+import eu.etaxonomy.cdm.persistence.query.MatchMode;\r
+import eu.etaxonomy.cdm.persistence.query.OrderHint;\r
\r
\r
@Service\r
-@Transactional(readOnly = true)\r
+@Transactional(propagation = Propagation.SUPPORTS, readOnly = true)\r
public class NameServiceImpl extends IdentifiableServiceBase<TaxonNameBase,ITaxonNameDao> implements INameService {\r
static private final Logger logger = Logger.getLogger(NameServiceImpl.class);\r
\r
* Constructor\r
*/\r
public NameServiceImpl(){\r
- logger.debug("Load NameService Bean");\r
+ if (logger.isDebugEnabled()) { logger.debug("Load NameService Bean"); }\r
}\r
\r
//********************* METHODS ****************************************************************// \r
return super.findCdmObjectsByTitle(name);\r
}\r
\r
+ public List<NonViralName> getNamesByNameCache(String nameCache){\r
+ List result = dao.findByName(nameCache, MatchMode.EXACT, null, null, null, null);\r
+ return result;\r
+ }\r
+ \r
public List getNamesByName(String name, CdmBase sessionObject){\r
return super.findCdmObjectsByTitle(name, sessionObject);\r
}\r
public List findNamesByTitle(String title, CdmBase sessionObject){\r
return super.findCdmObjectsByTitle(title, sessionObject);\r
}\r
- \r
- public TaxonNameBase<?,?> getTaxonNameByUuid(UUID uuid) {\r
- return super.getCdmObjectByUuid(uuid);\r
- }\r
-\r
- @Transactional(readOnly = false)\r
- public UUID saveTaxonName(TaxonNameBase taxonName) {\r
- return super.saveCdmObject(taxonName);\r
- }\r
- \r
- @Transactional(readOnly = false)\r
- public Map<UUID, TaxonNameBase> saveTaxonNameAll(Collection<? extends TaxonNameBase> taxonNameCollection){\r
- return saveCdmObjectAll(taxonNameCollection);\r
+ \r
+ public List<TaxonNameBase> findByTitle(IIdentifiableEntityServiceConfigurator config) {\r
+ return super.findByTitle(config);\r
}\r
\r
@Transactional(readOnly = false)\r
public Map<UUID, ReferencedEntityBase> saveReferencedEntitiesAll(Collection<ReferencedEntityBase> referencedEntityCollection){\r
return referencedEntityDao.saveAll(referencedEntityCollection);\r
}\r
- \r
- @Transactional(readOnly = false)\r
- public UUID removeTaxonName(TaxonNameBase taxonName) {\r
- return super.removeCdmObject(taxonName);\r
- }\r
\r
public List<TaxonNameBase> getAllNames(int limit, int start){\r
return dao.list(limit, start);\r
public List<TypeDesignationBase> getAllTypeDesignations(int limit, int start){\r
return typeDesignationDao.getAllTypeDesignations(limit, start);\r
}\r
- \r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * homotypicalGroupService.list\r
+ */\r
public List<HomotypicalGroup> getAllHomotypicalGroups(int limit, int start){\r
return homotypicalGroupDao.list(limit, start);\r
}\r
\r
- /* (non-Javadoc)\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * remove\r
+ */\r
+ @Deprecated\r
+ public List<RelationshipBase> getAllRelationships(int limit, int start){\r
+ return dao.getAllRelationships(limit, start);\r
+ }\r
+ \r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.Rank) \r
+ * (non-Javadoc)\r
* @see eu.etaxonomy.cdm.api.service.INameService#getRankVocabulary()\r
*/\r
public OrderedTermVocabulary<Rank> getRankVocabulary() {\r
return rankVocabulary;\r
}\r
\r
- /* (non-Javadoc)\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.NameRelationshipType) \r
+ * (non-Javadoc)\r
* @see eu.etaxonomy.cdm.api.service.INameService#getNameRelationshipTypeVocabulary()\r
*/\r
public TermVocabulary<NameRelationshipType> getNameRelationshipTypeVocabulary() {\r
return nameRelTypeVocabulary;\r
}\r
\r
- /* (non-Javadoc)\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.StatusType) \r
+ * (non-Javadoc)\r
* @see eu.etaxonomy.cdm.api.service.INameService#getStatusTypeVocabulary()\r
*/\r
public TermVocabulary<NomenclaturalStatusType> getStatusTypeVocabulary() {\r
return nomStatusTypeVocabulary;\r
}\r
\r
- /* (non-Javadoc)\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.SpecimenTypeDesignationStatus) \r
+ * (non-Javadoc)\r
* @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()\r
*/\r
- public TermVocabulary<TypeDesignationStatus> getTypeDesignationStatusVocabulary() {\r
+ public TermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationStatusVocabulary() {\r
String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";\r
UUID uuid = UUID.fromString(uuidString);\r
- TermVocabulary<TypeDesignationStatus> typeDesigStatusVocabulary = \r
+ TermVocabulary<SpecimenTypeDesignationStatus> typeDesigStatusVocabulary = \r
(TermVocabulary)vocabularyDao.findByUuid(uuid);\r
return typeDesigStatusVocabulary;\r
}\r
\r
- public void generateTitleCache() {\r
- logger.warn("Not yet implemented");\r
- // TODO Auto-generated method stub\r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * is this the same as termService.getVocabulary(VocabularyEnum.SpecimenTypeDesignationStatus)\r
+ * and also seems to duplicate the above method, differing only in the DAO used and the return type \r
+ * (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()\r
+ */\r
+ public OrderedTermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationVocabulary() {\r
+ String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";\r
+ UUID uuid = UUID.fromString(uuidString);\r
+ OrderedTermVocabulary<SpecimenTypeDesignationStatus> typeDesignationVocabulary = \r
+ (OrderedTermVocabulary)orderedVocabularyDao.findByUuid(uuid);\r
+ return typeDesignationVocabulary;\r
}\r
\r
+\r
@Autowired\r
protected void setDao(ITaxonNameDao dao) {\r
this.dao = dao;\r
}\r
\r
- public Pager<HybridRelationship> getHybridNames(BotanicalName name, HybridRelationshipType type, Integer pageSize, Integer pageNumber) {\r
+ public Pager<HybridRelationship> getHybridNames(NonViralName name, HybridRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
Integer numberOfResults = dao.countHybridNames(name, type);\r
\r
List<HybridRelationship> results = new ArrayList<HybridRelationship>();\r
if(numberOfResults > 0) { // no point checking again\r
- results = dao.getHybridNames(name, type, pageSize, pageNumber); \r
+ results = dao.getHybridNames(name, type, pageSize, pageNumber,orderHints,propertyPaths); \r
}\r
\r
return new DefaultPagerImpl<HybridRelationship>(pageNumber, numberOfResults, pageSize, results);\r
}\r
-\r
- public Pager<NameRelationship> getRelatedNames(TaxonNameBase name,NameRelationshipType type, Integer pageSize, Integer pageNumber) {\r
- Integer numberOfResults = dao.countRelatedNames(name, type);\r
+ \r
+ public List<NameRelationship> listFromNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedFrom, type);\r
\r
List<NameRelationship> results = new ArrayList<NameRelationship>();\r
if(numberOfResults > 0) { // no point checking again\r
- results = dao.getRelatedNames(name, type, pageSize, pageNumber); \r
+ results = dao.getNameRelationships(name, NameRelationship.Direction.relatedFrom, type, pageSize, pageNumber, orderHints, propertyPaths); \r
}\r
+ return results;\r
+ }\r
+\r
+ public Pager<NameRelationship> pageFromNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedFrom, type);\r
\r
+ List<NameRelationship> results = new ArrayList<NameRelationship>();\r
+ if(numberOfResults > 0) { // no point checking again\r
+ results = dao.getNameRelationships(name, NameRelationship.Direction.relatedFrom, type, pageSize, pageNumber, orderHints, propertyPaths); \r
+ }\r
return new DefaultPagerImpl<NameRelationship>(pageNumber, numberOfResults, pageSize, results);\r
}\r
+ \r
+ public List<NameRelationship> listToNameRelationships(TaxonNameBase name, NameRelationshipType type,\r
+ Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+\r
+ Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedTo, type);\r
+\r
+ List<NameRelationship> results = new ArrayList<NameRelationship>();\r
+ if (numberOfResults > 0) { // no point checking again\r
+ results = dao.getNameRelationships(name, \r
+ NameRelationship.Direction.relatedTo, \r
+ type, \r
+ pageSize, \r
+ pageNumber,\r
+ orderHints, \r
+ propertyPaths);\r
+ }\r
+ return results;\r
+ }\r
+ \r
+ public Pager<NameRelationship> pageToNameRelationships(TaxonNameBase name, NameRelationshipType type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countNameRelationships(name, NameRelationship.Direction.relatedTo, type);\r
\r
- public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name,TypeDesignationStatus status, Integer pageSize, Integer pageNumber) {\r
+ List<NameRelationship> results = new ArrayList<NameRelationship>();\r
+ if (numberOfResults > 0) { // no point checking again\r
+ results = dao.getNameRelationships(name, NameRelationship.Direction.relatedTo, type, pageSize, pageNumber,\r
+ orderHints, propertyPaths);\r
+ }\r
+\r
+ return new DefaultPagerImpl<NameRelationship>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+\r
+ \r
+ public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name, SpecimenTypeDesignationStatus status, \r
+ Integer pageSize, Integer pageNumber) { \r
+ return getTypeDesignations(name, status, pageSize, pageNumber, null);\r
+ }\r
+ \r
+ public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name, SpecimenTypeDesignationStatus status, \r
+ Integer pageSize, Integer pageNumber, List<String> propertyPaths){\r
Integer numberOfResults = dao.countTypeDesignations(name, status);\r
\r
List<TypeDesignationBase> results = new ArrayList<TypeDesignationBase>();\r
if(numberOfResults > 0) { // no point checking again\r
- results = dao.getTypeDesignations(name, status, pageSize, pageNumber); \r
+ results = dao.getTypeDesignations(name, status, pageSize, pageNumber, propertyPaths); \r
}\r
\r
return new DefaultPagerImpl<TypeDesignationBase>(pageNumber, numberOfResults, pageSize, results);\r
}\r
-\r
- public Pager<TaxonNameBase> searchNames(String uninomial,String infraGenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) {\r
+ \r
+ /**\r
+ * FIXME Candidate for harmonization\r
+ * rename search\r
+ */\r
+ public Pager<TaxonNameBase> searchNames(String uninomial,String infraGenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints,\r
+ List<String> propertyPaths) {\r
Integer numberOfResults = dao.countNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank);\r
\r
List<TaxonNameBase> results = new ArrayList<TaxonNameBase>();\r
if(numberOfResults > 0) { // no point checking again\r
- results = dao.searchNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber); \r
+ results = dao.searchNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber, orderHints, propertyPaths); \r
}\r
\r
return new DefaultPagerImpl<TaxonNameBase>(pageNumber, numberOfResults, pageSize, results);\r
}\r
\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.INameService#getUuidAndTitleCacheOfNames()\r
+ */\r
+ public List<UuidAndTitleCache> getUuidAndTitleCacheOfNames() {\r
+ return dao.getUuidAndTitleCacheOfNames();\r
+ }\r
+\r
+ public Pager<TaxonNameBase> findByName(Class<? extends TaxonNameBase> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize,Integer pageNumber, List<OrderHint> orderHints,List<String> propertyPaths) {\r
+ Integer numberOfResults = dao.countByName(clazz, queryString, matchmode, criteria);\r
+ \r
+ List<TaxonNameBase> results = new ArrayList<TaxonNameBase>();\r
+ if(numberOfResults > 0) { // no point checking again\r
+ results = dao.findByName(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths); \r
+ }\r
+ \r
+ return new DefaultPagerImpl<TaxonNameBase>(pageNumber, numberOfResults, pageSize, results);\r
+ }\r
+\r
+ public HomotypicalGroup findHomotypicalGroup(UUID uuid) {\r
+ return homotypicalGroupDao.findByUuid(uuid);\r
+ }\r
+\r
+\r
+ /* (non-Javadoc)\r
+ * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()\r
+ */\r
+ @Override\r
+ public void updateTitleCache() {\r
+ Class<TaxonNameBase> clazz = TaxonNameBase.class;\r
+ super.updateTitleCache(clazz, null, null);\r
+ }\r
+ \r
+ @Override\r
+ protected void setOtherCachesNull(TaxonNameBase name) {\r
+ if (name.isInstanceOf(NonViralName.class)){\r
+ NonViralName nvn = CdmBase.deproxy(name, NonViralName.class);\r
+ if (! nvn.isProtectedNameCache()){\r
+ nvn.setNameCache(null, false);\r
+ }\r
+ if (! nvn.isProtectedAuthorshipCache()){\r
+ nvn.setAuthorshipCache(null, false);\r
+ }\r
+ if (! nvn.isProtectedFullTitleCache()){\r
+ nvn.setFullTitleCache(null, false);\r
+ }\r
+ }\r
+ }\r
+ \r
+ \r
}\r
BGBM BDI Projects / cdmlib.git / blobdiff