(no commit message)
[cdmlib.git] / .gitattributes
index d594697c62b4a4615720dce09c611d4fb816a6e9..e6d26d77e52dd96fd6e96aba8233a0978b2f12ae 100644 (file)
@@ -1,12 +1,14 @@
 * text=auto !eol
+cdmLibraryFeature/.project -text
+cdmLibraryFeature/build.properties -text
+cdmLibraryFeature/feature.xml -text
 cdmLibraryPlugin/.classpath -text
 cdmLibraryPlugin/.project -text
 cdmLibraryPlugin/META-INF/MANIFEST.MF -text
 cdmLibraryPlugin/antlr-2.7.6.jar -text
 cdmLibraryPlugin/asm-attrs.jar -text
 cdmLibraryPlugin/asm.jar -text
-cdmLibraryPlugin/aspectjrt.jar -text
-cdmLibraryPlugin/aspectjweaver.jar -text
+cdmLibraryPlugin/aspectjrt-1.5.4.jar -text
 cdmLibraryPlugin/build.properties -text
 cdmLibraryPlugin/build_ant.xml -text
 cdmLibraryPlugin/cdmLibrary.jar -text
@@ -38,10 +40,18 @@ cdmLibraryPlugin/spring.jar -text
 cdmLibraryPlugin/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
 cdmLibraryPlugin/xercesImpl.jar -text
 cdmLibraryPlugin/xml-apis.jar -text
+cdmLibraryUpdateSite/.project -text
+cdmLibraryUpdateSite/features/eu.etaxonomy.cdmLibrary_0.2.5.jar -text
+cdmLibraryUpdateSite/index.html -text
+cdmLibraryUpdateSite/plugins/eu.etaxonomy.cdmLibrary_0.2.5.jar -text
+cdmLibraryUpdateSite/site.xml -text
+cdmLibraryUpdateSite/web/site.css -text
+cdmLibraryUpdateSite/web/site.xsl -text
 cdmParent/.classpath -text
 cdmParent/.project -text
 cdmParent/mavenInstall.bat -text
 cdmParent/pom.xml -text
+cdmParent/settings.xml -text
 cdmlibrary/.classpath -text
 cdmlibrary/.externalToolBuilders/Ant_Cdm_Builder.launch -text
 cdmlibrary/.settings/org.eclipse.jdt.core.prefs -text
@@ -60,62 +70,153 @@ cdmlibrary/src/main/java/eu/etaxonomy/cdm/api/service/ServiceBase.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/aspectj/PropertyChangeAspect.aj -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/database/DbType.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/database/LocalHsqldb.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/PropertyChangeBean.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/Description.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/agent/Address.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/agent/Contact.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/agent/Institution.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/agent/InstitutionType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/agent/InstitutionalMembership.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/agent/Person.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/agent/PersonInSource.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/agent/Team.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/agent/TeamInSource.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/AnnotatableEntity.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Annotation.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/AudioFile.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/CdmBase.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Fact.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/FactBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTermBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/EntityInSourceBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/EnumeratedTermBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Enumeration.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Extension.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/ExtensionType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Figure.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/IReferencedEntity.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/IdentifiableEntity.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/ImageFile.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Keyword.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Language.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/LanguageString.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Marker.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/MarkerType.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Media.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/NameAlias.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Source.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/MediaInstance.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/MovieFile.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/MultilanguageString.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/ReferencedEntityBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/ReferencedMedia.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Representation.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/Rights.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/RightsTerm.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/TimePeriod.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/VersionableEntity.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/common/package-info.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NameFact.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NameFactType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/AbsenceTerm.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/CategoricalData.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/CharacterTree.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/CommonTaxonName.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/Description.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionInSource.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/DescriptiveConcept.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/Distribution.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/DiurnalTerm.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/FeatureBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/FeatureType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/IdentificationKey.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/IndividualsAssociation.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/MeasurementUnit.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/Modifier.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/Paragraph.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/PresenceTerm.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/QuantitativeData.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/Scope.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/SeasonalTerm.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/Sex.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/Stage.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/State.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/StateData.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/StatisticalMeasure.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/StatisticalMeasurementValue.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/TaxonInteraction.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/TextData.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/description/TextFormat.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/location/Continent.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/location/NamedArea.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/location/NamedAreaInSource.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/location/NamedAreaLevel.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/location/NamedAreaType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/location/Point.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/location/ReferenceSystem.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/location/WaterbodyOrCountry.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaSample.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/molecular/GenBankAccession.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/molecular/Locus.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/molecular/PhylogeneticTree.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/molecular/Sequence.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/molecular/TissueSample.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/BacterialName.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/BotanicalName.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/CultivarPlantName.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/HybridRelationship.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/HybridRelationshipType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/ITypeDesignation.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NameInSource.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NameRelationship.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NameRelationshipType.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalCode.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NameTypeDesignation.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatus.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatusType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/NonViralName.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/Rank.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/TaxonName.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/TypeDesignation.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignation.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/TaxonNameBase.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/TypeDesignationStatus.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Article.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Book.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/BookSection.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/BookSeries.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/CdDvd.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/ConferenceProceedings.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Database.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Generic.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Journal.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Map.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/NomenclaturalReference.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Patent.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/PersonalCommunication.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/PublicationBase.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Report.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Thesis.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/Unpublished.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/publication/WebPage.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/specimen/Collection.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/specimen/Country.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/specimen/Institution.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/specimen/Locality.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/specimen/MaterialCategory.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/specimen/Region.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/specimen/Specimen.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/AcceptedTaxon.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/ViralName.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/name/ZoologicalName.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/occurrence/Collection.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/occurrence/Determination.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/occurrence/Fossil.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/occurrence/LivingIndividual.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/occurrence/Observation.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/occurrence/ObservationalUnit.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/occurrence/Occurrence.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/occurrence/PreservationMethod.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/occurrence/Specimen.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Article.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/BibtexEntryType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/BibtexReference.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Book.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/BookSection.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/CdDvd.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/ConferenceProceedings.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Database.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Generic.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/INomenclaturalReference.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/InProceedings.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Journal.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Map.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Patent.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/PersonalCommunication.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/PrintSeries.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/PrintedUnitBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Proceedings.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/PublicationBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/ReferenceBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/ReferenceInSource.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Report.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/SectionBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/StrictReferenceBase.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/Thesis.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/reference/WebPage.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/ConceptRelationshipType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/Synonym.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/SynonymRelationship.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/SynonymRelationshipType.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/SynonymTaxon.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/Taxon.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonBase.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonFact.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonFactType.java -text
+cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonInSource.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationship.java -text
-cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/view/Group.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/view/User.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/model/view/View.java -text
 cdmlibrary/src/main/java/eu/etaxonomy/cdm/persistence/dao/AgentDaoHibernateImpl.java -text
@@ -136,9 +237,15 @@ cdmlibrary/src/site/site.xml -text
 cdmlibrary/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
 cdmlibrary/src/test/java/eu/etaxonomy/cdm/functiontest/SpringControl.java -text
 cdmlibrary/src/test/java/eu/etaxonomy/cdm/model/name/NameRelationshipTest.java -text
-cdmlibrary/src/test/java/eu/etaxonomy/cdm/model/name/TaxonNameTest.java -text
 cdmlibrary/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlibrary/src/test/java/extern/TestJarMain.java -text
 cdmlibrary/zipManifest.txt -text
 docs/layers.graffle -text
 docs/layers.png -text
+updateSite/.project -text
+updateSite/features/eu.etaxonomy.cdmLibrary_0.2.5.jar -text
+updateSite/index.html -text
+updateSite/plugins/eu.etaxonomy.cdmLibrary_0.2.5.jar -text
+updateSite/site.xml -text
+updateSite/web/site.css -text
+updateSite/web/site.xsl -text