import java.sql.SQLException;\r
import java.util.HashMap;\r
import java.util.Map;\r
+import java.util.UUID;\r
\r
import org.apache.log4j.Logger;\r
-import org.springframework.stereotype.Component;\r
\r
-import eu.etaxonomy.cdm.common.ResultWrapper;\r
import eu.etaxonomy.cdm.model.description.AbsenceTerm;\r
-import eu.etaxonomy.cdm.model.description.Feature;\r
import eu.etaxonomy.cdm.model.description.PresenceAbsenceTermBase;\r
import eu.etaxonomy.cdm.model.description.PresenceTerm;\r
import eu.etaxonomy.cdm.model.location.NamedArea;\r
import eu.etaxonomy.cdm.model.location.TdwgArea;\r
-import eu.etaxonomy.cdm.model.name.HybridRelationshipType;\r
import eu.etaxonomy.cdm.model.name.Rank;\r
-import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;\r
-import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;\r
import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;\r
\r
/**\r
public static final int T_STATUS_NOT_ACCEPTED = 0;\r
\r
// Author\r
- public static final int A_AUCT = 1;\r
+ public static final int A_AUCT = 0; // Was A_AUCT = 1\r
public static final String A_AUCTNAME = "auct.";\r
\r
// Parenthesis\r
public static final int P_PARENTHESIS = 1;\r
\r
+ //new AbsencePresenceTermUUIDs\r
+ \r
+ public static UUID noData;\r
+ //public static UUID doubtfull_present;\r
+ \r
// Rank\r
public static final int R_KINGDOM = 1;\r
public static final int R_SUBKINGDOM = 2;\r
private static Map<String, String> tdwgAreas = null;\r
\r
public static PresenceAbsenceTermBase<?> occStatus2PresenceAbsence(int occStatusId) throws UnknownCdmTypeException{\r
+ \r
+ if (Integer.valueOf(occStatusId) == null) {\r
+ return PresenceTerm.PRESENT();\r
+ }\r
switch (occStatusId){\r
- case 0: return AbsenceTerm.ABSENT();\r
- case 2: return PresenceTerm.INTRODUCED();\r
- case 1: return PresenceTerm.NATIVE();\r
- default: {\r
- throw new UnknownCdmTypeException("Unknown presence status (id=" + Integer.valueOf(occStatusId).toString() + ")");\r
- }\r
+ case 0: return PresenceTerm.PRESENT();\r
+ case 2: return AbsenceTerm.ABSENT();\r
+ case 1: return PresenceTerm.PRESENT_DOUBTFULLY();\r
+\r
+ default: {\r
+\r
+ return null;\r
+ \r
+\r
}\r
+ \r
+ }\r
+ }\r
+ public static void setUUIDs(HashMap<String,UUID> uuids){\r
+ noData = uuids.get("noData");\r
+ //doubtfull_present = uuids.get("doubtfullPresent");\r
+ \r
}\r
-\r
\r
public static PresenceAbsenceTermBase<?> occStatus2PresenceAbsence_ (int occStatusId) throws UnknownCdmTypeException{\r
switch (occStatusId){\r
case 0: return null;\r
- case 110: return PresenceTerm.CULTIVATED_REPORTED_IN_ERROR();\r
+ //case 110: return AbsenceTerm.CULTIVATED_REPORTED_IN_ERROR();\r
case 120: return PresenceTerm.CULTIVATED();\r
- case 210: return PresenceTerm.INTRODUCED_REPORTED_IN_ERROR();\r
+ // case 210: return AbsenceTerm.INTRODUCED_REPORTED_IN_ERROR();\r
case 220: return PresenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE();\r
case 230: return PresenceTerm.INTRODUCED_FORMERLY_INTRODUCED();\r
case 240: return PresenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED();\r
case 260: return PresenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION();\r
case 270: return PresenceTerm.INTRODUCED_ADVENTITIOUS();\r
case 280: return PresenceTerm.INTRODUCED_NATURALIZED();\r
- case 310: return PresenceTerm.NATIVE_REPORTED_IN_ERROR();\r
+ //case 310: return AbsenceTerm.NATIVE_REPORTED_IN_ERROR();\r
case 320: return PresenceTerm.NATIVE_PRESENCE_QUESTIONABLE();\r
case 330: return PresenceTerm.NATIVE_FORMERLY_NATIVE();\r
case 340: return PresenceTerm.NATIVE_DOUBTFULLY_NATIVE();\r
}\r
\r
\r
- public static NamedArea areaId2TdwgArea (FaunaEuropaeaDistributionTaxon fauEuTaxon) \r
+ public static NamedArea areaId2TdwgArea (FaunaEuropaeaDistribution fauEuDistribution) \r
throws UnknownCdmTypeException {\r
\r
NamedArea tdwgArea = null;\r
\r
try {\r
- int areaId = fauEuTaxon.getAreaId();\r
- String areaName = fauEuTaxon.getAreaName();\r
- String areaCode = fauEuTaxon.getAreaCode();\r
- int extraLimital = fauEuTaxon.getExtraLimital();\r
+ int areaId = fauEuDistribution.getAreaId();\r
+ String areaName = fauEuDistribution.getAreaName();\r
+ String areaCode = fauEuDistribution.getAreaCode();\r
+ int extraLimital = fauEuDistribution.getExtraLimital();\r
\r
//TODO: Verify mappings with comments. Those don't map to TDWG areas.\r
\r
if (areaCode.equals("AD")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("SPA-AN");\r
- else if (areaCode.equals("AFR")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("24"); // Afro-tropical region - Northeast Tropical Africa\r
+ //else if (areaCode.equals("AFR")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("24"); // Afro-tropical region - Northeast Tropical Africa\r
else if (areaCode.equals("AL")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("ALB-OO");\r
else if (areaCode.equals("AT")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("AUT-AU");\r
- else if (areaCode.equals("AUS")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("50"); // Australian region - Australia\r
+ //else if (areaCode.equals("AUS")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("50"); // Australian region - Australia\r
else if (areaCode.equals("BA")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("YUG-BH"); \r
else if (areaCode.equals("BE")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("BGM-BE");\r
else if (areaCode.equals("BG")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("BUL-OO");\r
else if (areaCode.equals("DK-DEN")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("DEN-OO");\r
else if (areaCode.equals("DK-FOR")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("FOR-OO");\r
else if (areaCode.equals("EE")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("BLT-ES");\r
- else if (areaCode.equals("EPA")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("3"); // Palaearctic - Asia-Temperate\r
+ //else if (areaCode.equals("EPA")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("3"); // Palaearctic - Asia-Temperate\r
else if (areaCode.equals("ES-BAL")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("BLT-ES");\r
else if (areaCode.equals("ES-CNY")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("CNY-OO");\r
else if (areaCode.equals("ES-SPA")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("SPA-SP");\r
else if (areaCode.equals("GB-GI")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("SPA-GI");\r
else if (areaCode.equals("GB-GRB")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("GRB-OO");\r
else if (areaCode.equals("GB-NI")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("IRE-NI");\r
- else if (areaCode.equals("GR-AEG")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("EAI-OO"); // North Aegean Is. - East Aegean Is.\r
- else if (areaCode.equals("GR-CYC")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("GRC-OO"); // Cyclades Is. - Greece\r
- else if (areaCode.equals("GR-DOD")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("EAI-OO"); // Dodecanese Is. - East Aegean Is.\r
+ //else if (areaCode.equals("GR-AEG")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("EAI-OO"); // North Aegean Is. - East Aegean Is.\r
+ //else if (areaCode.equals("GR-CYC")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("GRC-OO"); // Cyclades Is. - Greece\r
+ //else if (areaCode.equals("GR-DOD")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("EAI-OO"); // Dodecanese Is. - East Aegean Is.\r
else if (areaCode.equals("GR-GRC")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("GRC-OO");\r
else if (areaCode.equals("GR-KRI")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("KRI-OO");\r
else if (areaCode.equals("HR")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("YUG-CR");\r
else if (areaCode.equals("MD")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("UKR-MO");\r
else if (areaCode.equals("MK")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("YUG-MA");\r
else if (areaCode.equals("MT")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("SIC-MA");\r
- else if (areaCode.equals("NAF")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("20"); // North Africa - Northern Africa\r
- else if (areaCode.equals("NEA")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("7"); // Nearctic region - Northern America\r
- else if (areaCode.equals("NEO")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("8"); // Neotropical region - Southern America\r
+ //else if (areaCode.equals("NAF")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("20"); // North Africa - Northern Africa\r
+ //else if (areaCode.equals("NEA")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("7"); // Nearctic region - Northern America\r
+ //else if (areaCode.equals("NEO")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("8"); // Neotropical region - Southern America\r
else if (areaCode.equals("NL")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("NET-OO");\r
else if (areaCode.equals("NO-NOR")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("NOR-OO");\r
else if (areaCode.equals("NO-SVA")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("SVA-OO");\r
- else if (areaCode.equals("NRE")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("34"); // Near East - Western Asia\r
- else if (areaCode.equals("ORR")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("35"); // Oriental region - Arabian Peninsula\r
+ //else if (areaCode.equals("NRE")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("34"); // Near East - Western Asia\r
+ //else if (areaCode.equals("ORR")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("35"); // Oriental region - Arabian Peninsula\r
else if (areaCode.equals("PL")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("POL-OO");\r
else if (areaCode.equals("PT-AZO")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("AZO-OO");\r
else if (areaCode.equals("PT-MDR")) tdwgArea = TdwgArea.getAreaByTdwgAbbreviation("MDR-OO");\r
}\r
\r
} catch (Exception e) {\r
- e.printStackTrace();\r
- logger.warn("Exception occurred. Area could not be mapped.");\r
+ //e.printStackTrace();\r
+ logger.debug("Exception occurred. Area could not be mapped." + fauEuDistribution.getAreaName());\r
return null;\r
} \r
\r
return tdwgArea;\r
}\r
\r
+ public final static HashMap<String, UUID> abbrToUUID = new HashMap<String,UUID>();\r
+ static\r
+ { \r
+ abbrToUUID.put("AUS", UUID.fromString("cf979ca8-8cb6-42df-b2ce-1f432ec7c26b"));\r
+ abbrToUUID.put("AFR", UUID.fromString("07ac5e75-9fc9-4aa0-938c-1324c9618b97"));\r
+ abbrToUUID.put("EPA", UUID.fromString("e83446d7-7379-4beb-be05-295f8da6f5ae"));\r
+ abbrToUUID.put("GR-AEG", UUID.fromString("6bd422aa-9911-4b80-8595-0f6d1ecd5eee"));\r
+ abbrToUUID.put("GR-CYC", UUID.fromString("8e7d7f1e-3e4d-4f7c-96ec-93ec91e528d6"));\r
+ abbrToUUID.put("GR-DOD", UUID.fromString("6d6f6842-924e-440b-9e7e-3df1922bf4a6"));\r
+ abbrToUUID.put("NAF", UUID.fromString("d2c54b1e-5f9f-455d-b308-6859cb153c7b"));\r
+ abbrToUUID.put("NEA", UUID.fromString("aa87f6b8-110b-44b5-a329-91a08f1a4cc9"));\r
+ abbrToUUID.put("NEO", UUID.fromString("0e6e0ce9-c6ab-46bc-80b9-aee4a0620e78"));\r
+ abbrToUUID.put("NRE", UUID.fromString("d51876c2-eaf6-4c7f-963e-337dd3e0d729"));\r
+ abbrToUUID.put("ORR", UUID.fromString("04cab4f8-b316-4e21-9bcc-236a45e4e83d"));\r
+ }\r
+ public static UUID getUUIDByAreaAbbr(String abbr){\r
+ return abbrToUUID.get(abbr);\r
+ }\r
+ \r
}\r