Last updates for natural language generation (added comments, new options, cleaned...

[cdmlib.git] / .gitattributes

diff --git a/.gitattributes b/.gitattributes
index 605cbbe72b481d4ac1b811161bc51d383d9a9cdf..85456262363405b55d62b69d4c764f84fbfded2d 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -1,6 +1,6 @@
 * text=auto !eol
-/INSTALL.TXT -text
-/LICENSE.TXT -text
+/LICENSE.txt -text
+/README.txt -text
 cdmlib-commons/LICENSE.TXT -text
 cdmlib-commons/README.TXT -text
 cdmlib-commons/pom.xml -text
@@ -114,6 +114,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinMode
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/validation/BerlinModelWebMarkerImportValidator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelAuthorExport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelAuthorTeamExport.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelClassificationExport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelExportBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelExportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelExportMapping.java -text
@@ -124,7 +125,6 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelReference
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonExport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonNameExport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonRelationExport.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonomicTreeExport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/CollectionExportMapping.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/mapper/CreatedAndNotesMapper.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/mapper/DbAnnotationMapper.java -text
@@ -412,7 +412,7 @@ cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/jaxb/TaxonTest.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/jaxb/TermTest.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/reference/EndnoteRecordImportTest-input.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/sdd/SDD-Test-Simple.xml -text
-cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/sdd/SDDDescriptionIOTest-input.xml -text
+cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/sdd/SDDImportTest-input.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/abcd206/in/SpecimenImportConfiguratorTest-input.xml -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/specimen/excel/in/ExcelImportConfiguratorTest-input.xls -text
 cdmlib-io/src/test/resources/eu/etaxonomy/cdm/io/taxonx/TaxonXImportConfiguratorTest-input.xml -text
@@ -427,7 +427,11 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/aspectj/PropertyChangeAspect.aj -tex
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/DateTimeBridge.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/HibernateProxyHelper.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/PartialBridge.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/PartialUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/StripHtmlBridge.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/URIUserType.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/UUIDUserType.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/hibernate/WSDLDefinitionUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmAccessor.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmAccessorFactoryImpl.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/jaxb/CdmNamespacePrefixMapper.java -text
@@ -500,7 +504,6 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/NoDefinedTermClassExcep
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OriginalSourceBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/PartialUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/PersistentMultiLanguageText.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/PersistentMultiLanguageTextType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ReferencedEntityBase.java -text
@@ -511,12 +514,10 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermLanguageComparator.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TimePeriod.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/UUIDUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/User.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/UuidAndTitleCache.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/VersionableEntity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/VocabularyEnum.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/WSDLDefinitionUserType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/WrongTermTypeException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/ITermInitializer.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/ITermLoader.java -text
@@ -536,12 +537,14 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureTree.java -
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IIdentificationKey.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IModifiable.java -text svneol=unset#text/plain
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IndividualsAssociation.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/KeyStatement.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MeasurementUnit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MediaKey.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Modifier.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MultiAccessKey.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/NaturalLanguageTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKey.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKeyNode.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/QuantitativeData.java -text
@@ -636,12 +639,6 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/SpecimenOrObservati
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/overview.html -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Article.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Book.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/BookSection.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/CdDvd.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Database.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Generic.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IArticle.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IBook.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IBookSection.java -text
@@ -658,32 +655,20 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IPrintSeries.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IPrintedUnitBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IProceedings.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IPublicationBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IReferenceBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IReference.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IReport.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/ISectionBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IThesis.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IVolumeReference.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/IWebPage.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/InProceedings.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Journal.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Map.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Patent.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/PersonalCommunication.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/PrintSeries.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/PrintedUnitBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Proceedings.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/PublicationBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/ReferenceBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Reference.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/ReferenceFactory.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/ReferenceIdentity.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/ReferenceType.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Report.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/SectionBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Thesis.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/WebPage.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/AlternativeTreeRoot.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/Classification.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/ITreeNode.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/IllegalAncestryException.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/Synonym.java -text
@@ -696,7 +681,6 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonComparatorSearch.ja
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonNode.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationship.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonRelationshipType.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonomicTree.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/view/AuditEvent.java -text
@@ -830,29 +814,10 @@ cdmlib-model/src/main/resources/terms/SynonymRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/TaxonRelationshipType.csv -text
 cdmlib-model/src/main/resources/terms/TdwgArea.csv -text
 cdmlib-model/src/main/resources/terms/TextFormat.csv -text
+cdmlib-model/src/main/resources/terms/UndefinedLanguage.csv -text
 cdmlib-model/src/main/resources/terms/WaterbodyOrCountry.csv -text
 cdmlib-model/src/main/resources/update/update_r2.1.2.2_r2.4.1.2.mysql.sql -text
 cdmlib-model/src/main/resources/update/update_term_r2.4.2.1-r2.4.2.2.mysql.sql -text
-cdmlib-model/src/site/resources/images/uml/Agent.png -text
-cdmlib-model/src/site/resources/images/uml/Base_classes.png -text
-cdmlib-model/src/site/resources/images/uml/Defined_terms.png -text
-cdmlib-model/src/site/resources/images/uml/Description.png -text
-cdmlib-model/src/site/resources/images/uml/Keys.png -text
-cdmlib-model/src/site/resources/images/uml/Language.png -text
-cdmlib-model/src/site/resources/images/uml/Location.png -text
-cdmlib-model/src/site/resources/images/uml/Media.png -text
-cdmlib-model/src/site/resources/images/uml/Molecular_section.png -text
-cdmlib-model/src/site/resources/images/uml/Names_section.png -text
-cdmlib-model/src/site/resources/images/uml/Nomenclatural_defined_terms.png -text
-cdmlib-model/src/site/resources/images/uml/Occurrence_section.png -text
-cdmlib-model/src/site/resources/images/uml/Reference_BibTex.png -text
-cdmlib-model/src/site/resources/images/uml/Reference_base.png -text
-cdmlib-model/src/site/resources/images/uml/Reference_types.png -text
-cdmlib-model/src/site/resources/images/uml/Source.png -text
-cdmlib-model/src/site/resources/images/uml/Taxon_section.png -text
-cdmlib-model/src/site/resources/images/uml/Term_base.png -text
-cdmlib-model/src/site/resources/images/uml/Types_section.png -text
-cdmlib-model/src/site/resources/images/uml/package_overview.png -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/datagenerator/TaxonGenerator.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/DatabaseInitialiser.java -text
@@ -867,6 +832,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefaultTermInitializerT
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefinedTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/ExtensionTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/IdentifiableEntityTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/LanguageTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermBaseTest.java -text
@@ -875,6 +841,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermVocabularyTest.java
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TimePeriodTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/DefaultTermInitializerTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/TermLoaderTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PolytomousKeyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/TextDataTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/PointTest.java -text
@@ -891,12 +858,12 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignationTe
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/TaxonNameBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/occurrence/SpecimenTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/reference/PublicationBaseTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/ClassificationTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/RemoveSynonymsInSameHomotypicGroupTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonComparatorTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonNodeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonTest.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonomicTreeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/agent/PersonDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/agent/TeamDefaultCacheStrategyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/cache/common/TermDefaultCacheStrategyTest.java -text
@@ -965,20 +932,33 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/SybaseDatabaseT
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/CdmUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ColumnAdder.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ColumnNameChanger.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ColumnRemover.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/DatabaseTypeNotSupportedException.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ISchemaUpdater.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ISchemaUpdaterStep.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ITermUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/ITermUpdaterStep.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/IUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/MapTableCreator.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/MnTableCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SchemaUpdaterBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SchemaUpdaterStepBase.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SchemaUpdater_24_25.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SchemaUpdater_25_26.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SequenceTableCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SimpleSchemaUpdaterStep.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SingleTermUpdater.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/SortIndexUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TableCreator.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TableDroper.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TableNameChanger.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TermUpdaterBase.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TermUpdater_24_25.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UpdaterBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/VocabularyCreator.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/SchemaUpdater_24_25.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/SortIndexUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/TermUpdater_24_25.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/FeatureNodeTreeColumnUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/PolytomousKeyDataMover.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/SchemaUpdater_25_30.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/SequenceTableCreator.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/TermUpdater_25_30.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AbstractBeanInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AutoPropertyInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/BeanInitializer.java -text
@@ -1017,6 +997,8 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IF
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IFeatureNodeDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IFeatureTreeDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IIdentificationKeyDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IPolytomousKeyDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IPolytomousKeyNodeDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IStatisticalMeasurementValueDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/description/IWorkingSetDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/AlternativeSpellingSuggestionParser.java -text
@@ -1049,6 +1031,8 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/desc
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/FeatureNodeDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/FeatureTreeDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/IdentificationKeyDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/PolytomousKeyDaoImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/PolytomousKeyNodeDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/StatisticalMeasurementValueDaoImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/WorkingSetDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaDaoHibernateImpl.java -text
@@ -1061,10 +1045,10 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/occurrence/CollectionDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/occurrence/OccurrenceDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/reference/ReferenceDaoHibernateImpl.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/ClassificationDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonAlternativeSpellingSuggestionParser.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImpl.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonomicTreeDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/view/AuditEventDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/media/IMediaRepresentationDao.java -text
@@ -1076,9 +1060,9 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/name/ITypeDesi
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/occurrence/ICollectionDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/occurrence/IOccurrenceDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/IReferenceDao.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/IClassificationDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonNodeDao.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonomicTreeDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/fetch/CdmFetch.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGenerator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CdmDataChangeEvent.java -text
@@ -1118,7 +1102,6 @@ cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/hsql-datasource.xml -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/persistence.xml -text
 cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/spelling.xml -text
 cdmlib-persistence/src/main/resources/log4j.properties -text
-cdmlib-persistence/src/site/site.xml -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/CdmDataSourceTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/CdmPersistentDataSourceTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/DatabaseEnumTest.java -text
@@ -1147,8 +1130,11 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/comm
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/TermVocabularyDaoImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/UserDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/DescriptionDaoHibernateImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/DescriptionElementDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/IdentificationKeyDaoHibernateImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/description/PolytomousKeyDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaDaoImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartDaoImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/ConfigurableNameCacheStrategyGeneratorsTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TaxonNameDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TestingBotanicalNameCacheStrategy.java -text
@@ -1228,8 +1214,16 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/common/UserDaoHibernateImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/dataset.dtd -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/description/DescriptionDaoHibernateImplTest.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/description/DescriptionElementDaoHibernateImplTest.testChangeLanguageString-result.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/description/DescriptionElementDaoHibernateImplTest.testPersistMultiLanguageString-result.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/description/DescriptionElementDaoHibernateImplTest.testRemoveLanguageString-result.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/description/DescriptionElementDaoHibernateImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/description/IdentificationKeyDaoHibernateImplTest.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/description/PolytomousKeyDaoHibernateImplTest.testSavePolytomousKey-result.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/description/PolytomousKeyDaoHibernateImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaDaoImplTest.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartDaoImplTest.testSave-result.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/media/MediaRepresentationPartDaoImplTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/media/OregonScientificDS6639-DSC_0307-small.jpg -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/media/OregonScientificDS6639-DSC_0307-small.tif -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TaxonNameDaoHibernateImplTest.xml -text
@@ -1276,8 +1270,9 @@ cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/odf/StylesFactory.java -te
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/pdf/PdfOutputModule.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/taxpub/TaxPubOutputModule.java -text
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/xml/XMLOutputModule.java -text
-cdmlib-print/src/main/resources/eu/etaxonomy/printpublisher/out/odf/cdmToOdfText.xsl -text
-cdmlib-print/src/main/resources/eu/etaxonomy/printpublisher/out/pdf/cdmToPdf.xsl -text
+cdmlib-print/src/main/resources/eu/etaxonomy/cdm/print/out/odf/cdmToOdfText.xsl -text
+cdmlib-print/src/main/resources/eu/etaxonomy/cdm/print/out/pdf/cdmToPdf.xsl -text
+cdmlib-print/src/main/resources/eu/etaxonomy/cdm/print/package.html -text
 cdmlib-print/src/main/resources/log4j.properties -text
 cdmlib-print/src/site/apt/download.apt -text
 cdmlib-print/src/site/apt/formats.apt -text
@@ -1286,595 +1281,12 @@ cdmlib-print/src/site/apt/index.apt -text
 cdmlib-print/src/site/apt/writing-templates.apt -text
 cdmlib-print/src/site/fml/troubleshooting.fml -text
 cdmlib-print/src/site/site.xml -text
-cdmlib-print/src/test/java/eu/etaxonomy/printpublisher/PublisherTest.java -text
-cdmlib-print/src/test/java/eu/etaxonomy/printpublisher/TransformatorTest.java -text
-cdmlib-print/src/test/java/eu/etaxonomy/printpublisher/out/odf/OdfOutputModuleTest.java -text
+cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/PublisherTest.java -text
+cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/TransformatorTest.java -text
+cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/out/odf/OdfOutputModuleTest.java -text
 cdmlib-print/src/test/resources/20100719-1939-xml_export.xml -text
-cdmlib-print/src/test/resources/eu/etaxonomy/printpublisher/out/odf/input.xml -text
-cdmlib-print/src/test/resources/eu/etaxonomy/printpublisher/out/odf/single_input.xml -text
-cdmlib-print/src/test/resources/taxpub/taxpub_20100208/ReleaseNotes.txt -text
-cdmlib-print/src/test/resources/taxpub/taxpub_20100208/tax-treatment-NS0.dtd -text
-cdmlib-print/src/test/resources/taxpub/taxpub_20100208/taxpubcustom-classes-NS0.ent -text
-cdmlib-print/src/test/resources/taxpub/taxpub_20100208/taxpubcustom-elements-NS0.ent -text
-cdmlib-print/src/test/resources/taxpub/taxpub_20100208/taxpubcustom-mixes-NS0.ent -text
-cdmlib-print/src/test/resources/taxpub/taxpub_20100208/taxpubcustom-models-NS0.ent -text
-cdmlib-print/src/test/resources/taxpub/taxpub_20100208/taxpubcustom-modules-NS0.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/Smallsamples/samplesmall3-base.xml -text
-cdmlib-print/src/test/resources/taxpub_20100107/Smallsamples/samplesmall3-pub.xml -text
-cdmlib-print/src/test/resources/taxpub_20100107/XHTMLtablesetup3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/annotation3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/articlemeta3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/backmatter3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/base-test3.dtd -text
-cdmlib-print/src/test/resources/taxpub_20100107/catalog-v3.xml -text
-cdmlib-print/src/test/resources/taxpub_20100107/catalog.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/chars3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/common3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/default-classes3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/default-mixes3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/delivery12-9/samples/samplesmall3-pub.xml -text
-cdmlib-print/src/test/resources/taxpub_20100107/delivery12-9/tax-treatment-publishing3.dtd -text
-cdmlib-print/src/test/resources/taxpub_20100107/delivery12-9/taxpubREADME -text
-cdmlib-print/src/test/resources/taxpub_20100107/delivery12-9/taxpubcustom-classes3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/delivery12-9/taxpubcustom-elements.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/delivery12-9/taxpubcustom-mixes3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/delivery12-9/taxpubcustom-models3.ent -text
-cdmlib-print/src/test/resources/taxpub_20100107/delivery12-9/taxpubcustom-modules3.ent -text
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-cdmlib-print/src/test/resources/taxpub_20100107/documentation-0/abbrev-journal-title.html -text
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+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ClassificationPortalListController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/DerivedUnitFacadeController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/DerivedUnitFacadePortalController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/DescriptionController.java -text
@@ -1947,8 +1361,6 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonListControll
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonNodeController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonNodeListController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonPortalController.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonomicTreePortalController.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonomicTreePortalListController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TermController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TermListController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/VocabularyController.java -text
@@ -2072,6 +1484,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/json/processor/value/DateTim
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/json/processor/value/HibernateJSONValueProcessor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/json/processor/value/MapJSONValueProcessor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/json/processor/value/PartialJSONValueProcessor.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/json/processor/value/URIJSONValueProcessor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/json/processor/value/UUIDJSONValueProcessor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/json/util/CardinalityPropertyFilter.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/json/util/InitializedHibernatePropertyFilter.java -text
@@ -2149,11 +1562,13 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/AgentServiceImpl.java
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/AnnotatableServiceBase.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/AnnotationService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/AuditEventService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ClassificationServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/CollectionServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/CommonServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/DatabaseServiceHibernateImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/DefaultCategoricalDescriptionBuilder.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/DefaultQuantitativeDescriptionBuilder.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/DeltaTextDataProcessor.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/DescriptionBuilder.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/DescriptionServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/DistributionNodeComparator.java -text
@@ -2164,6 +1579,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IAgentService.java -t
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IAnnotatableService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IAnnotationService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IAuditEventService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IClassificationService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ICollectionService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ICommonService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IDatabaseService.java -text
@@ -2179,12 +1595,12 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/INameService.java -te
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/INaturalLanguageGenerator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/INaturalLanguageTextDataProcessor.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IOccurrenceService.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IPolytomousKeyService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IReferenceService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxonNodeComparator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxonNodeService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxonService.java -text
-cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxonTreeService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITermService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IUserService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IVersionableService.java -text
@@ -2196,19 +1612,20 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/IdentificationKeyServ
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/LocationServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/MarkerServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/MediaServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/MicroFormatCategoricalDescriptionBuilder.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/MicroFormatQuantitativeDescriptionBuilder.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/NameServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/NamedAreaNodeComparator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/NamedAreaTree.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGenerator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/OccurrenceServiceImpl.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/PolytomousKeyServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ReferenceServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ServiceBase.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeByNameComparator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonServiceImpl.java -text
-cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonTreeServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TermServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/UserService.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/VersionableServiceBase.java -text
@@ -2257,6 +1674,7 @@ cdmlib-services/src/main/resources/wsdl/LSIDDataServiceSOAPBindings.wsdl -text
 cdmlib-services/src/main/resources/wsdl/LSIDPortTypes.wsdl -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/ClassificationServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/CommonServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/DescriptionServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentifiableServiceBaseTest.java -text
@@ -2265,7 +1683,6 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest2.
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGeneratorTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java -text
-cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonTreeServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TermServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/UserServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDAuthorityServiceTest.java -text
@@ -2321,12 +1738,8 @@ cdmlib-services/src/test/resources/eu/etaxonomy/cdm/validation/ValidationTest.xm
 cdmlib-services/src/test/resources/log4j.properties -text
 cdmlib-services/src/test/resources/override.properties -text
 cdmlib-services/src/test/resources/unitils.properties -text
-pdfdocs/cdm.pdf -text
-pdfdocs/cdmlib-config.properties -text
-pdfdocs/cdmlib-doc.sh -text
-pdfdocs/pdfdoclet-1.0.2-all.jar -text
 /pom.xml -text
-/settings.xml -text
+src/changes/changes.xml -text
 src/docbkx/ReferenceDocumentation.xml -text
 src/docbkx/annotation-and-markers.xml -text
 src/docbkx/base-classes.xml -text
@@ -2355,4 +1768,5 @@ src/site/apt/rest-api.apt -text
 src/site/fml/faq.fml -text
 src/site/fml/troubleshooting.fml -text
 src/site/resources/images/cdmlib-arch4.png -text
+src/site/resources/images/cdmlib_overview.png -text
 src/site/site.xml -text