hide term vocabulary constructors and create factory methods instead

[cdmlib.git] / .gitattributes

diff --git a/.gitattributes b/.gitattributes
index 5db92a394eff6078e015d61f6e6fdf65947d6efd..2f51164f5d1340f78af68571ac30af980680ae0c 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -13,6 +13,7 @@ cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/FileCopy.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/IProgressMonitor.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/NullProgressMonitor.java -text svneol=unset#text/plain
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/ResultWrapper.java -text
+cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/StreamUtils.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/Tree.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/TreeNode.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/UriUtils.java -text
@@ -54,10 +55,15 @@ cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceAuthorConfigurator
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceConfiguratorBase.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceNamesConfigurator.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/ipni/IpniServicePublicationConfigurator.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlQuery.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlResponseSchemaAdapter.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapper.java -text
+cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/openurl/OpenUrlReference.java -text
 cdmlib-ext/src/main/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapper.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/EditGeoServiceTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/bci/BciServiceTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/ipni/IpniServiceTest.java -text
+cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
@@ -283,6 +289,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/reference/endnote/in/EndnoteRecordsI
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/reference/endnote/in/IEndnotePlaceholderClass.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/SDDIoBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/SDDTransformer.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/in/SDDDataSetImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/in/SDDImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/in/SDDImportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/sdd/in/SDDImportState.java -text
@@ -843,13 +850,16 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermVocabularyTest.java
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TimePeriodTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/DefaultTermInitializerTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/TermLoaderTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PolytomousKeyNodeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PolytomousKeyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/description/TextDataTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/PointTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/location/TdwgAreaTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/media/MediaTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BacterialNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BotanicalNameTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/CultivarPlantNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/HomotypicalGroupTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NameTypeDesignationStatusTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NameTypeDesignationTest.java -text
@@ -858,6 +868,8 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NonViralNameTest.java -te
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/RankTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignationTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/TaxonNameBaseTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/ViralNameTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/ZoologicalNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/occurrence/SpecimenTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/reference/PublicationBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/ClassificationTest.java -text
@@ -951,6 +963,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TableCreator.j
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TableDroper.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TableNameChanger.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/TermUpdaterBase.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UniqueIndexDropper.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/UpdaterBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/VocabularyCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v24_25/SchemaUpdater_24_25.java -text
@@ -962,7 +975,10 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/SchemaU
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/SequenceTableCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/TermUpdater_25_30.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/LanguageLabelUpdater.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/SchemaUpdater_30_31.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_30_31.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_311_312.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_31_311.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AbstractBeanInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AutoPropertyInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/BeanInitializer.java -text
@@ -1144,6 +1160,7 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TestingBotanicalNameCacheStrategy.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TestingZoologicalNameCacheStrategy.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/name/TypeDesignationDaoHibernateImplTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/occurrence/OccurrenceDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/reference/ReferenceDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonDaoHibernateImplTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImplTest.java -text
@@ -1288,6 +1305,7 @@ cdmlib-print/src/site/site.xml -text
 cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/PublisherTest.java -text
 cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/TransformatorTest.java -text
 cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/out/odf/OdfOutputModuleTest.java -text
+cdmlib-print/src/test/java/eu/etaxonomy/cdm/print/out/pdf/PdfOutputModuleTest.java -text
 cdmlib-print/src/test/resources/20100719-1939-xml_export.xml -text
 cdmlib-print/src/test/resources/eu/etaxonomy/cdm/print/out/odf/input.xml -text
 cdmlib-print/src/test/resources/eu/etaxonomy/cdm/print/out/odf/single_input.xml -text
@@ -1327,7 +1345,6 @@ cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPat
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedUrlHandlerMapping.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/AbstractController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/AbstractListController.java -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/AbstractOaiPmhController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/AgentController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/AgentListController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/AnnotatableController.java -text
@@ -1374,6 +1391,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ext/ExternalGeoCo
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/interceptor/ContentNegociationHandlerInterceptor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/interceptor/DatasourceContextHandlerInterceptor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/interceptor/LocaleContextHandlerInterceptor.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/oaipmh/AbstractOaiPmhController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/oaipmh/ReferenceOaiPmhController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/oaipmh/TaxonOaiPmhController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/util/CdmAntPathMatcher.java -text
@@ -1384,6 +1402,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/converter/Date
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/converter/DefaultRelatedPageConverter.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/converter/HibernateProxyFieldMapper.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/converter/HibernateProxyNullSafeDeepConverter.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/converter/IdentifierConverter.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/converter/LsidConverter.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/converter/LsidProxyConverter.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/converter/PreferLsidToUriConverter.java -text
@@ -1521,6 +1540,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/oaipmh/rdf/ListRecordsV
 cdmlib-remote/src/main/java/eu/etaxonomy/remote/dto/rdf/Rdf.java -text
 cdmlib-remote/src/main/java/net/sf/json/CycleSetAcess.java -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote.xml -text
+cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/dwc/mappings.xml -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/oaipmh/mappings.xml -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/oaipmh/oai2.xsl -text
 cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/tdwg/mappings-deep.xml -text
@@ -1685,6 +1705,8 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/IdentificationKeyGene
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/MediaServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NameServiceImplTest2.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGeneratorTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImplTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplBusinessTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TermServiceImplTest.java -text
@@ -1718,12 +1740,18 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/validation/ReferenceValidationTes
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/validation/TaxonNameCannotBeAcceptedAndSynonymTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/validation/ValidationTest.java -text
 cdmlib-services/src/test/resources/dbscripts/001_cdm.ddl -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.testSetDerivedUnitImageGallery-result.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.testSetDerivedUnitImageGallery.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.testSetFieldObjectImageGallery-result.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.testSetFieldObjectImageGallery.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/CommonServiceImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/IdentifiableServiceBaseTest.testUpdateTitleCache-result.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/IdentifiableServiceBaseTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/MediaDaoImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/OregonScientificDS6639-DSC_0307-small.jpg -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/OregonScientificDS6639-DSC_0307-small.tif -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImplTest -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.xml -text
 cdmlib-services/src/test/resources/eu/etaxonomy/cdm/api/service/UserServiceImplTest.xml -text