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[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 1ce7aa5bdcaa50e285c18fd0b6e507ad724623c6..d50646e228a848d4e0b416976d67eabe7e6f32ee 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -1,4 +1,6 @@
 * text=auto !eol
+/INSTALL.TXT -text
+cdmlib-commons/README.TXT -text
 cdmlib-commons/pom.xml -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/CdmUtils.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/XmlHelp.java -text
@@ -10,18 +12,26 @@ cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/CdmUtilsTest.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/common/XmlHelpTest.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
-cdmlib-io/INSTALL.txt -text
+cdmlib-io/README.TXT -text
 cdmlib-io/pom.xml -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelAuthorIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelFactsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImportActivator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelReferenceIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonNameIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTransformer.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/ImportHelper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/MapWrapper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/test/BerlinModelSources.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/source/Source.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/source/SourceConnectionException.java -text
 cdmlib-io/src/main/resources/log4j.properties -text
-cdmlib-model/INSTALL.TXT -text
+cdmlib-model/README.TXT -text
 cdmlib-model/pom.xml -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/aspectj/PropertyChangeAspect.aj -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/datagenerator/TaxonGenerator.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Address.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Agent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/agent/Contact.java -text
@@ -77,11 +87,12 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermLoader.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/AbsenceTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CategoricalData.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CharacterTree.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CommonTaxonName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Distribution.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureNode.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureTree.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IdentificationKey.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IndividualsAssociation.java -text
@@ -216,6 +227,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/TermLoaderTest.jav
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/BotanicalNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/NonViralNameTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/RankTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/name/TaxonNameBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/taxon/TaxonTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/BotanicNameCacheStrategyTest.java -text
@@ -225,7 +237,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestTaxonName
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/unit/EntityTestBase.java -text
-cdmlib-persistence/INSTALL.TXT -text
+cdmlib-persistence/README.TXT -text
 cdmlib-persistence/pom.xml -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationUtils.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSource.java -text
@@ -234,7 +246,7 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DataSourceNotFoundExc
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/DatabaseTypeEnum.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/LocalHsqldb.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/VocabularyStoreImpl.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/AbstractDatabaseType.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/DatabaseTypeBase.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/Db2DatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/HSqlDbDatabaseType.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/types/IDatabaseType.java -text
@@ -265,12 +277,13 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/IRef
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/ReferenceDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/TaxonDaoHibernateImpl.java -text
-cdmlib-persistence/src/main/resources/applicationContext.xml -text
-cdmlib-persistence/src/main/resources/cdm.datasource.xml -text
+cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
+cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/hsql-datasource.xml -text
+cdmlib-persistence/src/main/resources/eu/etaxonomy/cdm/persistence.xml -text
 cdmlib-persistence/src/main/resources/log4j.properties -text
-cdmlib-persistence/src/main/resources/sessionfactory.xml -text
 cdmlib-persistence/src/site/apt/index.apt -text
 cdmlib-persistence/src/site/site.xml -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/CdmDataSourceTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/DatabaseEnumTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/CdmEntityDaoBaseTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/common/DaoBaseTest.java -text
@@ -280,13 +293,13 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/taxon/TaxonDao
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestPersistence.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestSessionFactory.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
-cdmlib-persistence/src/test/resources/appInitContext.xml -text
-cdmlib-persistence/src/test/resources/applicationContext-test.xml -text
-cdmlib-persistence/src/test/resources/hibernate.properties -text
-cdmlib-persistence/src/test/resources/settings.xml -text
-cdmlib-persistence/src/test/resources/test.cdm.datasource.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/applicationContext.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
+cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/jdbc-datasource.xml -text
+cdmlib-remote/README.TXT -text
 cdmlib-remote/pom.xml -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathFilter.java -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathMatcher.java -text
@@ -323,17 +336,18 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TaxonTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TreeNode.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/AssemblerBase.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/NameAssembler.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/ReferenceAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/TaxonAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/package.html -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/CdmService.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/CdmObjectNonExisting.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/CdmServiceImpl.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/ICdmService.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/RestController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/Utils.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/XmlView.java -text
 cdmlib-remote/src/main/resources/log4j.properties -text
 cdmlib-remote/src/main/webapp/WEB-INF/applicationContext.xml -text
 cdmlib-remote/src/main/webapp/WEB-INF/cdmrest-servlet.xml -text
-cdmlib-remote/src/main/webapp/WEB-INF/sessionfactory.xml -text
 cdmlib-remote/src/main/webapp/WEB-INF/views.xml -text
 cdmlib-remote/src/main/webapp/WEB-INF/web.xml -text
 cdmlib-remote/src/main/webapp/index.jsp -text
@@ -341,7 +355,10 @@ cdmlib-remote/src/site/apt/index.apt -text
 cdmlib-remote/src/site/site.xml -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/ResultSetPageSTOTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/assembler/NameSTOAssemblerTest.java -text
-cdmlib-services/INSTALL.txt -text
+cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/service/CdmServiceImplTest.java -text
+cdmlib-remote/src/test/resources/applicationContext.xml -text
+cdmlib-remote/src/test/resources/log4j.properties -text
+cdmlib-services/README.TXT -text
 cdmlib-services/pom.xml -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationController.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/eclipse/EclipseRcpSaveFileSystemXmlApplicationContext.java -text
@@ -362,8 +379,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ReferenceServiceImpl.
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ServiceBase.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TermServiceImpl.java -text
-cdmlib-services/src/main/resources/annotated.xml -text
-cdmlib-services/src/main/resources/log4j.properties -text
+cdmlib-services/src/main/resources/eu/etaxonomy/cdm/services.xml -text
 cdmlib-services/src/site/apt/index.apt -text
 cdmlib-services/src/site/site.xml -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceImplTest.java -text
@@ -374,11 +390,10 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestService.java -t
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/TermLoaderIntegrationTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
-cdmlib-services/src/test/resources/appInitContext.xml -text
-cdmlib-services/src/test/resources/applicationContext-test.xml -text
-cdmlib-services/src/test/resources/hibernate.properties -text
-cdmlib-services/src/test/resources/settings.xml -text
-cdmlib-services/src/test/resources/test.cdm.datasource.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/applicationContext.xml -text
+cdmlib-services/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
+cdmlib-services/src/test/resources/log4j.properties -text
+eclipse-feature/.classpath -text
 eclipse-feature/.project -text
 eclipse-feature/build.properties -text
 eclipse-feature/feature.xml -text
@@ -441,6 +456,11 @@ eclipse-plugin/spring-tx-2.5.jar -text
 eclipse-plugin/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
 eclipse-plugin/xercesImpl.jar -text
 eclipse-plugin/xml-apis.jar -text
+eclipse-updateSite/.project -text
+eclipse-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
+eclipse-updateSite/index.html -text
+eclipse-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
+eclipse-updateSite/site.xml -text
 libraryTesterApplication/.classpath -text
 libraryTesterApplication/.project -text
 libraryTesterApplication/cdmResources/applicationContext.xml -text