// $Id$\r
/**\r
-* Copyright (C) 2007 EDIT\r
-* European Distributed Institute of Taxonomy \r
-* http://www.e-taxonomy.eu\r
-* \r
-* The contents of this file are subject to the Mozilla Public License Version 1.1\r
-* See LICENSE.TXT at the top of this package for the full license terms.\r
-*/\r
+ * Copyright (C) 2007 EDIT\r
+ * European Distributed Institute of Taxonomy\r
+ * http://www.e-taxonomy.eu\r
+ *\r
+ * The contents of this file are subject to the Mozilla Public License Version 1.1\r
+ * See LICENSE.TXT at the top of this package for the full license terms.\r
+ */\r
\r
package eu.etaxonomy.cdm.api.application;\r
\r
\r
import org.apache.log4j.Logger;\r
import org.hibernate.SessionFactory;\r
+import org.springframework.beans.BeansException;\r
import org.springframework.beans.factory.annotation.Autowired;\r
-import org.springframework.orm.hibernate3.HibernateTransactionManager;\r
+import org.springframework.context.ApplicationContext;\r
+import org.springframework.context.ApplicationContextAware;\r
+import org.springframework.orm.hibernate5.HibernateTransactionManager;\r
+import org.springframework.security.authentication.ProviderManager;\r
+import org.springframework.security.authentication.UsernamePasswordAuthenticationToken;\r
+import org.springframework.security.core.Authentication;\r
+import org.springframework.security.core.context.SecurityContext;\r
+import org.springframework.security.core.context.SecurityContextHolder;\r
import org.springframework.stereotype.Component;\r
import org.springframework.transaction.PlatformTransactionManager;\r
+import org.springframework.transaction.TransactionDefinition;\r
+import org.springframework.transaction.TransactionStatus;\r
+import org.springframework.transaction.support.DefaultTransactionDefinition;\r
\r
import eu.etaxonomy.cdm.api.conversation.ConversationHolder;\r
import eu.etaxonomy.cdm.api.service.IAgentService;\r
+import eu.etaxonomy.cdm.api.service.IAnnotationService;\r
+import eu.etaxonomy.cdm.api.service.IClassificationService;\r
+import eu.etaxonomy.cdm.api.service.ICollectionService;\r
import eu.etaxonomy.cdm.api.service.ICommonService;\r
import eu.etaxonomy.cdm.api.service.IDatabaseService;\r
import eu.etaxonomy.cdm.api.service.IDescriptionService;\r
+import eu.etaxonomy.cdm.api.service.IEntityConstraintViolationService;\r
+import eu.etaxonomy.cdm.api.service.IEntityValidationService;\r
+import eu.etaxonomy.cdm.api.service.IEventBaseService;\r
+import eu.etaxonomy.cdm.api.service.IFeatureNodeService;\r
+import eu.etaxonomy.cdm.api.service.IFeatureTreeService;\r
+import eu.etaxonomy.cdm.api.service.IGrantedAuthorityService;\r
+import eu.etaxonomy.cdm.api.service.IGroupService;\r
+import eu.etaxonomy.cdm.api.service.IIdentificationKeyService;\r
import eu.etaxonomy.cdm.api.service.ILocationService;\r
import eu.etaxonomy.cdm.api.service.IMediaService;\r
+import eu.etaxonomy.cdm.api.service.IMetadataService;\r
import eu.etaxonomy.cdm.api.service.INameService;\r
import eu.etaxonomy.cdm.api.service.IOccurrenceService;\r
+import eu.etaxonomy.cdm.api.service.IPolytomousKeyNodeService;\r
+import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;\r
+import eu.etaxonomy.cdm.api.service.IProgressMonitorService;\r
import eu.etaxonomy.cdm.api.service.IReferenceService;\r
import eu.etaxonomy.cdm.api.service.IService;\r
+import eu.etaxonomy.cdm.api.service.ITaxonNodeService;\r
import eu.etaxonomy.cdm.api.service.ITaxonService;\r
import eu.etaxonomy.cdm.api.service.ITermService;\r
import eu.etaxonomy.cdm.api.service.IUserService;\r
+import eu.etaxonomy.cdm.api.service.IVocabularyService;\r
+import eu.etaxonomy.cdm.api.service.IWorkingSetService;\r
+import eu.etaxonomy.cdm.api.service.molecular.IAmplificationService;\r
+import eu.etaxonomy.cdm.api.service.molecular.IPrimerService;\r
+import eu.etaxonomy.cdm.api.service.molecular.ISequenceService;\r
import eu.etaxonomy.cdm.model.common.CdmBase;\r
+import eu.etaxonomy.cdm.persistence.hibernate.permission.ICdmPermissionEvaluator;\r
\r
/**\r
* @author a.mueller\r
* @version 1.0\r
*/\r
@Component\r
-public class CdmApplicationDefaultConfiguration implements ICdmApplicationConfiguration {\r
- @SuppressWarnings("unused")\r
+public class CdmApplicationDefaultConfiguration implements ICdmApplicationConfiguration, ApplicationContextAware {\r
private static final Logger logger = Logger.getLogger(CdmApplicationDefaultConfiguration.class);\r
\r
+ protected ApplicationContext applicationContext;\r
+\r
+ @Autowired\r
+ //@Qualifier("nameService")\r
+ private IAnnotationService annotationService;\r
+\r
@Autowired\r
//@Qualifier("nameService")\r
private INameService nameService;\r
//@Qualifier("taxonService")\r
private ITaxonService taxonService;\r
@Autowired\r
+ //@Qualifier("classificationService")\r
+ private IClassificationService classificationService;\r
+ @Autowired\r
//@Qualifier("referenceService")\r
private IReferenceService referenceService;\r
@Autowired\r
@Autowired\r
//@Qualifier("termService")\r
private ITermService termService;\r
- @Autowired\r
+ //@Autowired\r
private HibernateTransactionManager transactionManager;\r
@Autowired\r
//@Qualifier("descriptionService")\r
//@Qualifier("occurrenceService")\r
private IOccurrenceService occurrenceService;\r
@Autowired\r
+ //@Qualifier("primerService")\r
+ private IPrimerService primerService;\r
+ @Autowired\r
+ //@Qualifier("amplificationService")\r
+ private IAmplificationService amplificationService;\r
+ @Autowired\r
+ //@Qualifier("sequenceService")\r
+ private ISequenceService sequenceService;\r
+ @Autowired\r
+ //@Qualifier("eventBaseService")\r
+ private IEventBaseService eventBaseService;\r
+ @Autowired\r
//@Qualifier("mediaService")\r
private IMediaService mediaService;\r
+ @Autowired\r
+ //@Qualifier("mediaService")\r
+ private IMetadataService metadataService;\r
@Autowired\r
//@Qualifier("commonService")\r
private ICommonService commonService;\r
@Autowired\r
private ILocationService locationService;\r
+ //@Autowired\r
+ private SessionFactory sessionFactory;\r
+ //@Autowired\r
+ private DataSource dataSource;\r
+ @Autowired\r
+ private ProviderManager authenticationManager;\r
@Autowired\r
private IUserService userService;\r
-// @Autowired\r
+ @Autowired\r
+ private IGrantedAuthorityService grantedAuthorityService;\r
+ @Autowired\r
+ private IGroupService groupService;\r
+ @Autowired\r
+ private ICollectionService collectionService;\r
+ @Autowired\r
+ private IFeatureTreeService featureTreeService;\r
+ @Autowired\r
+ private IFeatureNodeService featureNodeService;\r
+ @Autowired\r
+ private IVocabularyService vocabularyService;\r
+ @Autowired\r
+ private ITaxonNodeService taxonNodeService;\r
+ @Autowired\r
+ private IIdentificationKeyService identificationKeyService;\r
+ @Autowired\r
+ private IPolytomousKeyService polytomousKeyService;\r
+ @Autowired\r
+ private IPolytomousKeyNodeService polytomousKeyNodeService;\r
+ @Autowired\r
+ private IProgressMonitorService progressMonitorService;\r
+ @Autowired\r
+ private IEntityValidationService entityValidationService;\r
+ @Autowired\r
+ private IEntityConstraintViolationService entityConstraintViolationService;\r
+ @Autowired\r
+ private ICdmPermissionEvaluator permissionEvaluator;\r
+\r
+ // @Autowired\r
//@Qualifier("mainService")\r
private IService<CdmBase> mainService;\r
+\r
@Autowired\r
- private SessionFactory sessionFactory;\r
- @Autowired\r
- private DataSource dataSource;\r
+ private IWorkingSetService workingSetService;\r
+\r
+\r
+ //********************** CONSTRUCTOR *********************************************************/\r
\r
- \r
/**\r
- * \r
+ * Constructor\r
*/\r
- public CdmApplicationDefaultConfiguration() {\r
+ protected CdmApplicationDefaultConfiguration(){}\r
+\r
+\r
+ // ****************************** APPLICATION CONTEXT *************************************************/\r
+\r
+ @Override\r
+ public void setApplicationContext(ApplicationContext applicationContext) throws BeansException{\r
+ this.applicationContext = applicationContext;\r
}\r
\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getAgentService()\r
- */\r
- public IAgentService getAgentService() {\r
+ // ****************************** GETTER *************************************************/\r
+\r
+ @Override\r
+ public final Object getBean(String name){\r
+ return this.applicationContext.getBean(name);\r
+ }\r
+\r
+ @Override\r
+ public IAnnotationService getAnnotationService(){\r
+ return this.annotationService;\r
+ }\r
+\r
+ @Override\r
+ public IAgentService getAgentService(){\r
return this.agentService;\r
}\r
\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getDatabaseService()\r
- */\r
- public IDatabaseService getDatabaseService() {\r
+ @Override\r
+ public IDatabaseService getDatabaseService(){\r
return this.databaseService;\r
}\r
\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getNameService()\r
- */\r
- public INameService getNameService() {\r
+\r
+ @Autowired\r
+ public void setDataSource(DataSource dataSource){\r
+ this.dataSource = dataSource;\r
+ }\r
+\r
+ @Override\r
+ public INameService getNameService(){\r
return this.nameService;\r
}\r
\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getReferenceService()\r
- */\r
- public IReferenceService getReferenceService() {\r
+ @Override\r
+ public IReferenceService getReferenceService(){\r
return this.referenceService;\r
}\r
\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getTaxonService()\r
- */\r
- public ITaxonService getTaxonService() {\r
+ @Autowired\r
+ public void setSessionFactory(SessionFactory sessionFactory){\r
+ this.sessionFactory = sessionFactory;\r
+ }\r
+\r
+ @Override\r
+ public ITaxonService getTaxonService(){\r
return this.taxonService;\r
}\r
- \r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getDescriptionService()\r
- */\r
+\r
+ @Override\r
+ public IClassificationService getClassificationService(){\r
+ return this.classificationService;\r
+ }\r
+\r
+ @Override\r
+ public ITaxonNodeService getTaxonNodeService(){\r
+ return this.taxonNodeService;\r
+ }\r
+\r
+ @Override\r
public IDescriptionService getDescriptionService(){\r
return this.descriptionService;\r
}\r
\r
+ @Override\r
public IOccurrenceService getOccurrenceService(){\r
return this.occurrenceService;\r
}\r
\r
+ @Override\r
+ public IPrimerService getPrimerService(){\r
+ return this.primerService;\r
+ }\r
+\r
+ @Override\r
+ public IAmplificationService getAmplificationService(){\r
+ return this.amplificationService;\r
+ }\r
+\r
+ @Override\r
+ public ISequenceService getSequenceService(){\r
+ return this.sequenceService;\r
+ }\r
+\r
+ @Override\r
+ public IEventBaseService getEventBaseService() {\r
+ return this.eventBaseService;\r
+ }\r
+\r
+ @Override\r
public IMediaService getMediaService(){\r
return this.mediaService;\r
}\r
- \r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getTermService()\r
- */\r
- public ITermService getTermService() {\r
+\r
+ /**\r
+ * {@inheritDoc}\r
+ */\r
+ @Override\r
+ public IMetadataService getMetadataService() {\r
+ return this.metadataService;\r
+ }\r
+\r
+ @Override\r
+ public ITermService getTermService(){\r
return this.termService;\r
}\r
\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getCommonService()\r
- */\r
+ @Override\r
public ICommonService getCommonService(){\r
return this.commonService;\r
}\r
- \r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getLocationService()\r
- */\r
- public ILocationService getLocationService() {\r
+\r
+ @Override\r
+ public ILocationService getLocationService(){\r
return this.locationService;\r
}\r
- \r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getUserService()\r
- */\r
- public IUserService getUserService() {\r
+\r
+ @Override\r
+ public IUserService getUserService(){\r
return this.userService;\r
}\r
\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getCommonService()\r
- */\r
+ @Override\r
+ public IGrantedAuthorityService getGrantedAuthorityService(){\r
+ return this.grantedAuthorityService;\r
+ }\r
+\r
+ @Override\r
public IService<CdmBase> getMainService(){\r
return this.mainService;\r
}\r
- \r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#getTransactionManager()\r
- */\r
- public PlatformTransactionManager getTransactionManager() {\r
+\r
+ @Override\r
+ public PlatformTransactionManager getTransactionManager(){\r
return this.transactionManager;\r
}\r
\r
- /* (non-Javadoc)\r
- * @see eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration#NewConversation()\r
- */\r
- public ConversationHolder NewConversation() {\r
+\r
+ @Autowired\r
+ public void setTransactionManager(PlatformTransactionManager transactionManager){\r
+ this.transactionManager = (HibernateTransactionManager) transactionManager;\r
+ }\r
+\r
+ @Override\r
+ public ProviderManager getAuthenticationManager(){\r
+ return this.authenticationManager;\r
+ }\r
+\r
+ @Override\r
+ public ConversationHolder NewConversation(){\r
// TODO make this a prototype\r
return new ConversationHolder(dataSource, sessionFactory, transactionManager);\r
- } \r
- \r
+ }\r
+\r
+ @Override\r
+ public ICollectionService getCollectionService(){\r
+ return collectionService;\r
+ }\r
+\r
+ @Override\r
+ public IFeatureTreeService getFeatureTreeService(){\r
+ return featureTreeService;\r
+ }\r
+\r
+ @Override\r
+ public IFeatureNodeService getFeatureNodeService(){\r
+ return featureNodeService;\r
+ }\r
+\r
+ @Override\r
+ public IVocabularyService getVocabularyService(){\r
+ return vocabularyService;\r
+ }\r
+\r
+ @Override\r
+ public IIdentificationKeyService getIdentificationKeyService(){\r
+ return identificationKeyService;\r
+ }\r
+\r
+ @Override\r
+ public IPolytomousKeyService getPolytomousKeyService(){\r
+ return polytomousKeyService;\r
+ }\r
+\r
+\r
+ @Override\r
+ public IPolytomousKeyNodeService getPolytomousKeyNodeService(){\r
+ return polytomousKeyNodeService;\r
+ }\r
+\r
+ /**\r
+ * {@inheritDoc}\r
+ */\r
+ @Override\r
+ public IProgressMonitorService getProgressMonitorService() {\r
+ return progressMonitorService;\r
+ }\r
+\r
+ @Override\r
+ public IWorkingSetService getWorkingSetService(){\r
+ return workingSetService;\r
+ }\r
+\r
+ @Override\r
+ public IGroupService getGroupService(){\r
+ return groupService;\r
+ }\r
+\r
+\r
+ @Override\r
+ public IEntityValidationService getEntityValidationService(){\r
+ return entityValidationService;\r
+ }\r
+\r
+\r
+ @Override\r
+ public IEntityConstraintViolationService getEntityConstraintViolationService(){\r
+ return entityConstraintViolationService;\r
+ }\r
+\r
+ @Override\r
+ public ICdmPermissionEvaluator getPermissionEvaluator(){\r
+ return permissionEvaluator;\r
+ }\r
+\r
+ @Override\r
+ public TransactionStatus startTransaction(){\r
+ return startTransaction(false);\r
+ }\r
+\r
+ @Override\r
+ public TransactionStatus startTransaction(Boolean readOnly){\r
+\r
+ PlatformTransactionManager txManager = getTransactionManager();\r
+\r
+ DefaultTransactionDefinition defaultTxDef = new DefaultTransactionDefinition();\r
+ defaultTxDef.setReadOnly(readOnly);\r
+ TransactionDefinition txDef = defaultTxDef;\r
+\r
+ // Log some transaction-related debug information.\r
+ if (logger.isDebugEnabled()) {\r
+ logger.debug("Transaction name = " + txDef.getName());\r
+ logger.debug("Transaction facets:");\r
+ logger.debug("Propagation behavior = " + txDef.getPropagationBehavior());\r
+ logger.debug("Isolation level = " + txDef.getIsolationLevel());\r
+ logger.debug("Timeout = " + txDef.getTimeout());\r
+ logger.debug("Read Only = " + txDef.isReadOnly());\r
+ // org.springframework.orm.hibernate5.HibernateTransactionManager\r
+ // provides more transaction/session-related debug information.\r
+ }\r
+\r
+ TransactionStatus txStatus = txManager.getTransaction(txDef);\r
+ return txStatus;\r
+ }\r
+\r
+\r
+ @Override\r
+ public void commitTransaction(TransactionStatus txStatus){\r
+ PlatformTransactionManager txManager = getTransactionManager();\r
+ txManager.commit(txStatus);\r
+ return;\r
+ }\r
+\r
+ @Override\r
+ public void authenticate(String username, String password){\r
+ UsernamePasswordAuthenticationToken tokenForUser = new UsernamePasswordAuthenticationToken(username, password);\r
+ Authentication authentication = this.getAuthenticationManager().authenticate(tokenForUser);\r
+ SecurityContext context = SecurityContextHolder.getContext();\r
+ context.setAuthentication(authentication);\r
+ }\r
}\r
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