(no commit message)
[cdmlib.git] / .gitattributes
index b10c24fef4c0e2e012c391b4f9e2f8186cf8d2ff..8eae1390c792af097d5f6401230ed20697d0001a 100644 (file)
@@ -1,63 +1,6 @@
 * text=auto !eol
-cdmLibraryPlugin/.classpath -text
-cdmLibraryPlugin/.project -text
-cdmLibraryPlugin/META-INF/MANIFEST.MF -text
-cdmLibraryPlugin/antlr-2.7.6.jar -text
-cdmLibraryPlugin/aopalliance-1.0.jar -text
-cdmLibraryPlugin/asm-attrs.jar -text
-cdmLibraryPlugin/asm.jar -text
-cdmLibraryPlugin/aspectjrt-1.5.4.jar -text
-cdmLibraryPlugin/build.properties -text
-cdmLibraryPlugin/build_ant.xml -text
-cdmLibraryPlugin/cdmLibrary-0.4.1.jar -text
-cdmLibraryPlugin/cdmlib-commons-0.4.7-sources.jar -text
-cdmLibraryPlugin/cdmlib-commons-0.4.7.jar -text
-cdmLibraryPlugin/cdmlib-model-0.4.7-sources.jar -text
-cdmLibraryPlugin/cdmlib-model-0.4.7.jar -text
-cdmLibraryPlugin/cdmlib-persistence-0.4.7-sources.jar -text
-cdmLibraryPlugin/cdmlib-persistence-0.4.7.jar -text
-cdmLibraryPlugin/cdmlib-services-0.4.7-sources.jar -text
-cdmLibraryPlugin/cdmlib-services-0.4.7.jar -text
-cdmLibraryPlugin/cglib-2.1.3.jar -text
-cdmLibraryPlugin/commons-collections-2.1.1.jar -text
-cdmLibraryPlugin/commons-logging-1.0.4.jar -text
-cdmLibraryPlugin/dom4j-1.6.1.jar -text
-cdmLibraryPlugin/ehcache-1.2.3.jar -text
-cdmLibraryPlugin/ejb3-persistence.jar -text
-cdmLibraryPlugin/hibernate-annotations.jar -text
-cdmLibraryPlugin/hibernate-commons-annotations.jar -text
-cdmLibraryPlugin/hibernate-validator.jar -text
-cdmLibraryPlugin/hibernate3.jar -text
-cdmLibraryPlugin/hsqldb.jar -text
-cdmLibraryPlugin/javassist.jar -text
-cdmLibraryPlugin/jaxb-api.jar -text
-cdmLibraryPlugin/jaxb-impl-2.0-sources.jar -text
-cdmLibraryPlugin/jaxb-impl-2.0.jar -text
-cdmLibraryPlugin/jdbc2_0-stdext.jar -text
-cdmLibraryPlugin/jdom-1.0.jar -text
-cdmLibraryPlugin/jta.jar -text
-cdmLibraryPlugin/jtds-1.2.2.jar -text
-cdmLibraryPlugin/junit-4.4.jar -text
-cdmLibraryPlugin/log4j-1.2.14.jar -text
-cdmLibraryPlugin/msbase-2000.3.jar -text
-cdmLibraryPlugin/mssqlserver-2000.3.jar -text
-cdmLibraryPlugin/msutil-2000.3.jar -text
-cdmLibraryPlugin/mysql-connector-java-3.1.14-bin.jar -text
-cdmLibraryPlugin/opencsv-1.8.jar -text
-cdmLibraryPlugin/plugin.xml -text
-cdmLibraryPlugin/pom.xml -text
-cdmLibraryPlugin/postgresql-8.2-504.jdbc4.jar -text
-cdmLibraryPlugin/spring-2.5.jar -text
-cdmLibraryPlugin/spring-beans-2.5.jar -text
-cdmLibraryPlugin/spring-context-2.5.jar -text
-cdmLibraryPlugin/spring-core-2.5.jar -text
-cdmLibraryPlugin/spring-jdbc-2.5.jar -text
-cdmLibraryPlugin/spring-orm-2.5.jar -text
-cdmLibraryPlugin/spring-test-2.5.jar -text
-cdmLibraryPlugin/spring-tx-2.5.jar -text
-cdmLibraryPlugin/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
-cdmLibraryPlugin/xercesImpl.jar -text
-cdmLibraryPlugin/xml-apis.jar -text
+/INSTALL.TXT -text
+cdmlib-commons/INSTALL.txt -text
 cdmlib-commons/pom.xml -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/CdmUtils.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/XmlHelp.java -text
@@ -71,10 +14,17 @@ cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-commons/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
 cdmlib-io/INSTALL.txt -text
 cdmlib-io/pom.xml -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelAuthorIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelFactsIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelImportActivator.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelReferenceIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonIO.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTaxonNameIO.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/BerlinModelTransformer.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/ImportHelper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/MapWrapper.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/berlinModel/test/BerlinModelSources.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/source/Source.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/source/SourceConnectionException.java -text
 cdmlib-io/src/main/resources/log4j.properties -text
@@ -136,11 +86,12 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/init/TermLoader.java -t
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/AbsenceTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CategoricalData.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CharacterTree.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CommonTaxonName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Distribution.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureNode.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureTree.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/FeatureType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IdentificationKey.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IndividualsAssociation.java -text
@@ -284,7 +235,6 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestTaxonName
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/unit/EntityTestBase.java -text
-cdmlib-persistence/INSTALL.TXT -text
 cdmlib-persistence/pom.xml -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationUtils.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/CdmDataSource.java -text
@@ -324,10 +274,10 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/IRef
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/reference/ReferenceDaoHibernateImpl.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/ITaxonDao.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/taxon/TaxonDaoHibernateImpl.java -text
-cdmlib-persistence/src/main/resources/applicationContext.xml -text
-cdmlib-persistence/src/main/resources/cdm.datasource.xml -text
+cdmlib-persistence/src/main/resources/cdm-hsql-datasource.xml -text
+cdmlib-persistence/src/main/resources/cdm-jdbc-datasource.xml -text
+cdmlib-persistence/src/main/resources/cdm-persistence.xml -text
 cdmlib-persistence/src/main/resources/log4j.properties -text
-cdmlib-persistence/src/main/resources/sessionfactory.xml -text
 cdmlib-persistence/src/site/apt/index.apt -text
 cdmlib-persistence/src/site/site.xml -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/database/DatabaseEnumTest.java -text
@@ -339,13 +289,12 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/dao/taxon/TaxonDao
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestPersistence.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestSessionFactory.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/unit/CdmUnitTestBase.java -text
-cdmlib-persistence/src/test/resources/appInitContext.xml -text
-cdmlib-persistence/src/test/resources/applicationContext-test.xml -text
-cdmlib-persistence/src/test/resources/hibernate.properties -text
-cdmlib-persistence/src/test/resources/settings.xml -text
-cdmlib-persistence/src/test/resources/test.cdm.datasource.xml -text
+cdmlib-persistence/src/test/resources/applicationContext.xml -text
+cdmlib-persistence/src/test/resources/db.properties -text
+cdmlib-remote/INSTALL.TXT -text
 cdmlib-remote/pom.xml -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathFilter.java -text
 cdmlib-remote/src/main/java/carbonfive/spring/web/pathparameter/ParameterizedPathMatcher.java -text
@@ -382,11 +331,14 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TaxonTO.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/TreeNode.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/AssemblerBase.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/NameAssembler.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/ReferenceAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/assembler/TaxonAssembler.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/dto/package.html -text
-cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/CdmService.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/CdmObjectNonExisting.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/CdmServiceImpl.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/ICdmService.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/RestController.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/TestDataGenerator.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/service/Utils.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/view/XmlView.java -text
 cdmlib-remote/src/main/resources/log4j.properties -text
@@ -400,6 +352,7 @@ cdmlib-remote/src/site/apt/index.apt -text
 cdmlib-remote/src/site/site.xml -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/ResultSetPageSTOTest.java -text
 cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/assembler/NameSTOAssemblerTest.java -text
+cdmlib-services/INSTALL.TXT -text
 cdmlib-services/INSTALL.txt -text
 cdmlib-services/pom.xml -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/application/CdmApplicationController.java -text
@@ -438,9 +391,69 @@ cdmlib-services/src/test/resources/applicationContext-test.xml -text
 cdmlib-services/src/test/resources/hibernate.properties -text
 cdmlib-services/src/test/resources/settings.xml -text
 cdmlib-services/src/test/resources/test.cdm.datasource.xml -text
+eclipse-feature/.classpath -text
 eclipse-feature/.project -text
 eclipse-feature/build.properties -text
 eclipse-feature/feature.xml -text
+eclipse-plugin/.classpath -text
+eclipse-plugin/.project -text
+eclipse-plugin/META-INF/MANIFEST.MF -text
+eclipse-plugin/antlr-2.7.6.jar -text
+eclipse-plugin/aopalliance-1.0.jar -text
+eclipse-plugin/asm-attrs.jar -text
+eclipse-plugin/asm.jar -text
+eclipse-plugin/aspectjrt-1.5.4.jar -text
+eclipse-plugin/build.properties -text
+eclipse-plugin/build_ant.xml -text
+eclipse-plugin/cdmLibrary-0.4.1.jar -text
+eclipse-plugin/cdmlib-commons-0.4.7-sources.jar -text
+eclipse-plugin/cdmlib-commons-0.4.7.jar -text
+eclipse-plugin/cdmlib-model-0.4.7-sources.jar -text
+eclipse-plugin/cdmlib-model-0.4.7.jar -text
+eclipse-plugin/cdmlib-persistence-0.4.7-sources.jar -text
+eclipse-plugin/cdmlib-persistence-0.4.7.jar -text
+eclipse-plugin/cdmlib-services-0.4.7-sources.jar -text
+eclipse-plugin/cdmlib-services-0.4.7.jar -text
+eclipse-plugin/cglib-2.1.3.jar -text
+eclipse-plugin/commons-collections-2.1.1.jar -text
+eclipse-plugin/commons-logging-1.0.4.jar -text
+eclipse-plugin/dom4j-1.6.1.jar -text
+eclipse-plugin/ehcache-1.2.3.jar -text
+eclipse-plugin/ejb3-persistence.jar -text
+eclipse-plugin/hibernate-annotations.jar -text
+eclipse-plugin/hibernate-commons-annotations.jar -text
+eclipse-plugin/hibernate-validator.jar -text
+eclipse-plugin/hibernate3.jar -text
+eclipse-plugin/hsqldb.jar -text
+eclipse-plugin/javassist.jar -text
+eclipse-plugin/jaxb-api.jar -text
+eclipse-plugin/jaxb-impl-2.0-sources.jar -text
+eclipse-plugin/jaxb-impl-2.0.jar -text
+eclipse-plugin/jdbc2_0-stdext.jar -text
+eclipse-plugin/jdom-1.0.jar -text
+eclipse-plugin/jta.jar -text
+eclipse-plugin/jtds-1.2.2.jar -text
+eclipse-plugin/junit-4.4.jar -text
+eclipse-plugin/log4j-1.2.14.jar -text
+eclipse-plugin/msbase-2000.3.jar -text
+eclipse-plugin/mssqlserver-2000.3.jar -text
+eclipse-plugin/msutil-2000.3.jar -text
+eclipse-plugin/mysql-connector-java-3.1.14-bin.jar -text
+eclipse-plugin/opencsv-1.8.jar -text
+eclipse-plugin/plugin.xml -text
+eclipse-plugin/pom.xml -text
+eclipse-plugin/postgresql-8.2-504.jdbc4.jar -text
+eclipse-plugin/spring-2.5.jar -text
+eclipse-plugin/spring-beans-2.5.jar -text
+eclipse-plugin/spring-context-2.5.jar -text
+eclipse-plugin/spring-core-2.5.jar -text
+eclipse-plugin/spring-jdbc-2.5.jar -text
+eclipse-plugin/spring-orm-2.5.jar -text
+eclipse-plugin/spring-test-2.5.jar -text
+eclipse-plugin/spring-tx-2.5.jar -text
+eclipse-plugin/src/test/java/eu/etaxonomy/cdm/aspectj/PropertyChangeTest.java -text
+eclipse-plugin/xercesImpl.jar -text
+eclipse-plugin/xml-apis.jar -text
 libraryTesterApplication/.classpath -text
 libraryTesterApplication/.project -text
 libraryTesterApplication/cdmResources/applicationContext.xml -text
@@ -545,31 +558,3 @@ spring-json/src/main/java/org/springframework/web/servlet/view/json/error/HttpSt
 spring-json/src/main/java/org/springframework/web/servlet/view/json/error/ModelFlagError.java -text
 spring-json/src/site/apt/index.apt -text
 spring-json/src/site/site.xml -text
-updateSite/.project -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.2.5.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.0.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.1.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.2.1.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.2.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.3.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.4.1.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.4.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.0.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.1.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.4.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.5.jar -text
-updateSite/features/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
-updateSite/index.html -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.2.5.jar -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.0.jar -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.1.jar -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.2.0.jar -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.4.1.jar -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.4.jar -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.7.0.jar -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.7.1.jar -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.7.5.jar -text
-updateSite/plugins/eu.etaxonomy.cdmLibrary_0.4.7.6.jar -text
-updateSite/site.xml -text
-updateSite/web/site.css -text
-updateSite/web/site.xsl -text