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[cdmlib.git] / .gitattributes
diff --git a/.gitattributes b/.gitattributes
index 39d17a84bdaacc12cbad3a59749def806cb45c20..87df53dd81d4af587230822da4507b196d5de90d 100644 (file)
--- a/.gitattributes
+++ b/.gitattributes
@@ -14,6 +14,7 @@ cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/ResultWrapper.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/StreamUtils.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/Tree.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/TreeNode.java -text
+cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/UTF8.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/UriUtils.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/XmlHelp.java -text
 cdmlib-commons/src/main/java/eu/etaxonomy/cdm/common/media/AudioInfo.java -text
@@ -74,10 +75,7 @@ cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/openurl/MobotOpenUrlServiceWrapper
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/ext/sru/SruServiceWrapperTest.java -text
 cdmlib-ext/src/test/java/eu/etaxonomy/cdm/test/suite/CdmTestSuite.java -text
 cdmlib-ext/src/test/resources/dbscripts/001-cdm.h2.sql -text
-cdmlib-ext/src/test/resources/eu/etaxonomy/cdm.datasources.xml -text
 cdmlib-ext/src/test/resources/eu/etaxonomy/cdm/applicationContext-test.xml -text
-cdmlib-ext/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
-cdmlib-ext/src/test/resources/eu/etaxonomy/cdm/ext/dataset.dtd -text
 cdmlib-ext/src/test/resources/log4j.properties -text
 cdmlib-ext/src/test/resources/unitils.properties -text
 cdmlib-io/LICENSE.TXT -text
@@ -191,6 +189,7 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ResultSetPartitioner.java -te
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/ResultSetProxy.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/Source.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/SourceConnectionException.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/TdwgAreaProvider.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/XmlExportConfiguratorBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/XmlExportState.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/common/XmlImportBase.java -text
@@ -404,6 +403,8 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/JaxbImportState.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/LsInputImpl.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/WarningTolerantValidationEventHandler.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/jaxb/package-info.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/FeatureSorter.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/FeatureSorterInfo.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/FigureDataHolder.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/FootnoteDataHolder.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/LookAheadEventReader.java -text
@@ -413,6 +414,8 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/MarkupImportBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/MarkupImportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/MarkupImportState.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/MarkupInputStream.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/MarkupKeyImport.java -text
+cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/MarkupNomenclatureImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/MarkupSpecimenImport.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/MarkupTransformer.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/markup/UnmatchedLeads.java -text
@@ -424,7 +427,6 @@ cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/pilotOutputHtml/PilotOutputDocumentB
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/pilotOutputHtml/PilotOutputExportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/pilotOutputHtml/PilotOutputExportState.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/pilotOutputHtml/PilotOutputExporter.java -text
-cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/profiler/ProfilerController.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/reference/endnote/in/EndNoteImportBase.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/reference/endnote/in/EndnoteImportConfigurator.java -text
 cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/reference/endnote/in/EndnoteImportState.java -text
@@ -548,6 +550,7 @@ cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/jaxb/TaxonTest.java -text
 cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/jaxb/TermTest.java -text
 cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/jaxb/TestCdmSchemaGenerator.java -text
 cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/jaxb/URIEncoder.java -text
+cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/markup/FeatureSorterTest.java -text
 cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/reference/EndnoteRecordsImportTest.java -text
 cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/sdd/in/IkeyPlusImportTest.java -text
 cdmlib-io/src/test/java/eu/etaxonomy/cdm/io/sdd/in/KeyActivator.java -text
@@ -696,14 +699,14 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Annotation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/AnnotationType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmMetaData.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/CdmPreferences.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Credit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefaultTermInitializer.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTermBase.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DescriptionElementSource.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/EventBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Extension.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ExtensionType.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Figure.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/GrantedAuthorityImpl.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Group.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/IAnnotatableEntity.java -text svneol=unset#text/plain
@@ -736,6 +739,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/NoDefinedTermClassExcep
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OriginalSourceBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/OriginalSourceType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/PersistentMultiLanguageText.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/PersistentMultiLanguageTextType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/ReferencedEntityBase.java -text
@@ -744,6 +748,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/RelationshipTermBase.ja
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Representation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermLanguageComparator.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TermVocabulary.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/TimePeriod.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/User.java -text
@@ -762,6 +767,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CategoricalData.ja
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/CommonTaxonName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionElementBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptionElementSource.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/DescriptiveSystemRole.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Distribution.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Feature.java -text
@@ -773,7 +779,6 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/IndividualsAssocia
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/KeyStatement.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MeasurementUnit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MediaKey.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Modifier.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/MultiAccessKey.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/NaturalLanguageTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKey.java -text
@@ -781,10 +786,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PolytomousKeyNode.
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceAbsenceTermBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/PresenceTerm.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/QuantitativeData.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Scope.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Sex.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/SpecimenDescription.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/Stage.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/State.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/StateData.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/StatisticalMeasure.java -text
@@ -803,7 +805,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/NamedAreaLevel.java -
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/NamedAreaType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/Point.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/ReferenceSystem.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/TdwgArea.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/TdwgArea_Old.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/WaterbodyOrCountry.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/location/package.html -text
@@ -817,12 +819,10 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaRepresentation.java
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaRepresentationPart.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MediaUtils.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/MovieFile.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/ReferencedMediaBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/Rights.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/RightsTerm.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/RightsType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/media/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/DnaSample.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/GenBankAccession.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Locus.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/PhylogeneticTree.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/molecular/Sequence.java -text
@@ -844,6 +844,7 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatus.java
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NomenclaturalStatusType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NonViralName.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/Rank.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/RankClass.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/SpecimenTypeDesignationStatus.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/TaxonNameBase.java -text
@@ -858,17 +859,12 @@ cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Collection.java -te
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEvent.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivationEventType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnit.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DerivedUnitBase.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationEvent.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/DeterminationModifier.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/FieldObservation.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Fossil.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/FieldUnit.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/GatheringEvent.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/LivingBeing.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Observation.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/PreservationMethod.java -text
-cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/Specimen.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/SpecimenOrObservationBase.java -text
+cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/SpecimenOrObservationType.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/package-info.java -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/occurrence/package.html -text
 cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/overview.html -text
@@ -1053,7 +1049,7 @@ cdmlib-model/src/main/resources/terms/PreservationMethod.csv -text
 cdmlib-model/src/main/resources/terms/README.TXT -text
 cdmlib-model/src/main/resources/terms/Rank.csv -text
 cdmlib-model/src/main/resources/terms/ReferenceSystem.csv -text
-cdmlib-model/src/main/resources/terms/RightsTerm.csv -text
+cdmlib-model/src/main/resources/terms/RightsType.csv -text
 cdmlib-model/src/main/resources/terms/Scope.csv -text
 cdmlib-model/src/main/resources/terms/Sex.csv -text
 cdmlib-model/src/main/resources/terms/SpecimenTypeDesignationStatus.csv -text
@@ -1079,6 +1075,7 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/agent/TeamTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/AnnotationTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmMetaDataTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/CdmPreferencesTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefaultTermInitializerTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/DefinedTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/ExtensionTypeTest.java -text
@@ -1090,6 +1087,8 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/MarkerTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermBaseTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OrderedTermVocabularyTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/OriginalSourceTypeTest.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermTypeTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TermVocabularyTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/TimePeriodTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/model/common/init/DefaultTermInitializerTest.java -text
@@ -1153,8 +1152,8 @@ cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/ParserProblemTest.ja
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/strategy/parser/location/CoordinateConverterTest.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestFullReferenceParser.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestModel.java -text
+cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestRegExs.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestSpecimen.java -text
-cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/TestUUID.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestBookDefaultCacheStrategies.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestNameCacheStrategies.java -text
 cdmlib-model/src/test/java/eu/etaxonomy/cdm/test/function/strategy/TestTaxonNameParserBotanicalNameImpl.java -text
@@ -1238,7 +1237,6 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/SchemaU
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/SequenceTableCreator.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v25_30/TermUpdater_25_30.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/LanguageLabelUpdater.java -text
-cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/SchemaUpdater_301_31.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/SchemaUpdater_30_301.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_30_31.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_311_312.java -text
@@ -1246,6 +1244,8 @@ cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpd
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_313_314.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_314_315.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v30_31/TermUpdater_31_311.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/SchemaUpdater_31_33.java -text
+cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/database/update/v31_33/TermUpdater_31_33.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AbstractBeanInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AnnotationTypeAutoInitializer.java -text
 cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/AutoPropertyInitializer.java -text
@@ -1469,6 +1469,7 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibenate/permissio
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/CacheStrategyGeneratorTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/CdmDeleteListenerTest.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/persistence/hibernate/replace/ReferringObjectMetadataFactoryTest.java -text
+cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/profiler/ProfilerController.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestCdmApplicationUtils.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/function/TestPersistence.java -text
@@ -1482,10 +1483,9 @@ cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/suite/TestsShouldNotFailI
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/suite/TestsShouldNotFailInSuite_3.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/unitils/CleanSweepInsertLoadStrategy.java -text
 cdmlib-persistence/src/test/java/eu/etaxonomy/cdm/test/unitils/FlatFullXmlWriter.java -text
-cdmlib-persistence/src/test/resources/META-INF/persistence.xml -text
+cdmlib-persistence/src/test/resources/META-INF/persistence_old.xml -text
 cdmlib-persistence/src/test/resources/c3p0-config.xml -text
 cdmlib-persistence/src/test/resources/dbscripts/001-cdm.h2.sql -text
-cdmlib-persistence/src/test/resources/dbscripts/hibernate.cfg.xml -text
 cdmlib-persistence/src/test/resources/dbscripts/hibernate.properties -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/applicationContext-securityTest.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/applicationContext-test.common.xml -text
@@ -1496,10 +1496,8 @@ cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/cdm.datasources.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/database/ClearDBDataSet.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/database/ClearDB_with_Terms_DataSet.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/database/TermsDataSet-with_auditing_info.xml -text
-cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/database/TermsDataSet.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/BeanInitializerIntegration.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/FreeTextSearchIntegration.xml -text
-cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/FreeTextSearchIntegration.xml.backup -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/agent/AgentDaoImplTest.testDelete-result.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/agent/AgentDaoImplTest.testExists.xml -text
 cdmlib-persistence/src/test/resources/eu/etaxonomy/cdm/persistence/dao/hibernate/agent/AgentDaoImplTest.testFind.xml -text
@@ -1592,6 +1590,7 @@ cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/taxpub/TaxPubOutputModule.
 cdmlib-print/src/main/java/eu/etaxonomy/cdm/print/out/xml/XMLOutputModule.java -text
 cdmlib-print/src/main/resources/eu/etaxonomy/cdm/print/package.html -text
 cdmlib-print/src/main/resources/log4j.properties -text
+cdmlib-print/src/main/resources/stylesheets/mediawiki/functx-1.0-doc-2007-01.xsl -text
 cdmlib-print/src/main/resources/stylesheets/mediawiki/multipages.xsl -text
 cdmlib-print/src/main/resources/stylesheets/odf/cdmToOdfText.xsl -text
 cdmlib-print/src/main/resources/stylesheets/pdf/flora-malesiana.xsl -text
@@ -1615,8 +1614,8 @@ cdmlib-print/src/test/resources/eu/etaxonomy/cdm/print/out/odf/single_input.xml
 cdmlib-remote-webapp/LICENSE.TXT -text
 cdmlib-remote-webapp/README.TXT -text
 cdmlib-remote-webapp/ide/eclipse/cdmlib-remote[!!-~]-[!!-~]remote[!!-~]debug[!!-~]8000.launch -text
-cdmlib-remote-webapp/ide/eclipse/cdmserver[!!-~]-[!!-~]profile.launch -text
-cdmlib-remote-webapp/ide/eclipse/cdmserver[!!-~]-[!!-~]run.launch -text svneol=unset#application/xml
+cdmlib-remote-webapp/ide/eclipse/cdmlib-remote-webapp[!!-~]-[!!-~]profile.launch -text
+cdmlib-remote-webapp/ide/eclipse/cdmlib-remote-webapp[!!-~]-[!!-~]run.launch -text svneol=unset#application/xml
 cdmlib-remote-webapp/pom.xml -text
 cdmlib-remote-webapp/src/main/resources/log4j.properties -text
 cdmlib-remote-webapp/src/main/webapp/WEB-INF/applicationContext.views.xml -text
@@ -1717,6 +1716,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/PolytomousKeyPort
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ProgressMonitorController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ReferenceController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ReferenceListController.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/ReferencePortalController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/StatisticsController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonController.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/controller/TaxonListController.java -text
@@ -1825,6 +1825,7 @@ cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/MetadataPrefixEditor.
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/NamedAreaLevelPropertyEditor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/NamedAreaPropertyEditor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/RankPropertyEditor.java -text
+cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/RectanglePropertyEditor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/SetSpecEditor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/UUIDListPropertyEditor.java -text
 cdmlib-remote/src/main/java/eu/etaxonomy/cdm/remote/editor/UUIDPropertyEditor.java -text
@@ -1938,7 +1939,7 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/conversation/IConversationEna
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacade.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategy.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeConfigurator.java -text
-cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldObservationCacheStrategy.java -text
+cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldUnitCacheStrategy.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeNotSupportedException.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/facade/MethodNotSupportedByDerivedUnitTypeException.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/AbstractCategoricalDescriptionBuilder.java -text
@@ -2007,8 +2008,6 @@ cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/MediaServiceImpl.java
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/MicroFormatCategoricalDescriptionBuilder.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/MicroFormatQuantitativeDescriptionBuilder.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/NameServiceImpl.java -text
-cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/NamedAreaNodeComparator.java -text
-cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/NamedAreaTree.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/NaturalLanguageGenerator.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/OccurrenceServiceImpl.java -text
 cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/PolytomousKeyNodeServiceImpl.java -text
@@ -2094,7 +2093,7 @@ cdmlib-services/src/main/resources/wsdl/LSIDDataServiceSOAPBindings.wsdl -text
 cdmlib-services/src/main/resources/wsdl/LSIDPortTypes.wsdl -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/application/FirstDataInserterTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeCacheStrategyTest.java -text
-cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldObservationCacheStrategyTest.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeFieldUnitCacheStrategyTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/facade/DerivedUnitFacadeTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/ClassificationServiceImplTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/CommonServiceImplTest.java -text
@@ -2120,16 +2119,15 @@ cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDMetadataServ
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/lsid/LSIDRegistryTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/pager/PagerTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/scripts/FixMultipleTextDataInImageGalleries.java -text
+cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/ConcurrentSessionTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/Datasource.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestAgentService.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestC3P0Configuration.java -text
-cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestConcurrentSession.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestConversationEnabled.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestDatabase.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestLocationServiceImpl.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestService.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/TestTaxonFunction.java -text
-cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/function/hibernate.cfg.xml -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/CreateDataTest.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/CreateDataTestNoUnit.java -text
 cdmlib-services/src/test/java/eu/etaxonomy/cdm/test/integration/TermLoaderIntegrationTest.java -text
@@ -2210,7 +2208,9 @@ src/site/apt/index.apt -text
 src/site/apt/oai-pmh.apt -text
 src/site/apt/overview.apt -text
 src/site/apt/reference.apt -text
+src/site/apt/remote/name-catalogue-accepted.apt -text
 src/site/apt/remote/name-catalogue-default.apt -text
+src/site/apt/remote/name-catalogue-fuzzy.apt -text
 src/site/apt/remote/name-catalogue-name-info.apt -text
 src/site/apt/remote/name-catalogue-taxon-info.apt -text
 src/site/apt/remote/search-fulltext-info.apt -text