package eu.etaxonomy.cdm.persistence.dao.hibernate.common;
+import java.lang.reflect.Modifier;
+import java.util.HashSet;
+import java.util.List;
+import java.util.Set;
+
+import org.apache.log4j.Logger;
+import org.hibernate.Criteria;
+import org.hibernate.Query;
+import org.hibernate.Session;
+import org.hibernate.SessionFactory;
+import org.hibernate.criterion.Restrictions;
+import org.hibernate.impl.SessionFactoryImpl;
+import org.springframework.stereotype.Repository;
+
+import eu.etaxonomy.cdm.model.agent.Address;
+import eu.etaxonomy.cdm.model.agent.AgentBase;
+import eu.etaxonomy.cdm.model.agent.Contact;
+import eu.etaxonomy.cdm.model.agent.Institution;
+import eu.etaxonomy.cdm.model.agent.InstitutionType;
+import eu.etaxonomy.cdm.model.agent.InstitutionalMembership;
+import eu.etaxonomy.cdm.model.agent.Person;
+import eu.etaxonomy.cdm.model.agent.Team;
+import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
+import eu.etaxonomy.cdm.model.common.Annotation;
+import eu.etaxonomy.cdm.model.common.AnnotationType;
import eu.etaxonomy.cdm.model.common.CdmBase;
+import eu.etaxonomy.cdm.model.common.Credit;
+import eu.etaxonomy.cdm.model.common.DefinedTermBase;
+import eu.etaxonomy.cdm.model.common.Extension;
+import eu.etaxonomy.cdm.model.common.ExtensionType;
+import eu.etaxonomy.cdm.model.common.Figure;
+import eu.etaxonomy.cdm.model.common.GrantedAuthorityImpl;
+import eu.etaxonomy.cdm.model.common.Group;
+import eu.etaxonomy.cdm.model.common.Keyword;
+import eu.etaxonomy.cdm.model.common.LSID;
+import eu.etaxonomy.cdm.model.common.LSIDAuthority;
+import eu.etaxonomy.cdm.model.common.Language;
+import eu.etaxonomy.cdm.model.common.LanguageString;
+import eu.etaxonomy.cdm.model.common.Marker;
+import eu.etaxonomy.cdm.model.common.MarkerType;
+import eu.etaxonomy.cdm.model.common.OrderedTermBase;
+import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;
+import eu.etaxonomy.cdm.model.common.OriginalSource;
+import eu.etaxonomy.cdm.model.common.RelationshipTermBase;
+import eu.etaxonomy.cdm.model.common.Representation;
+import eu.etaxonomy.cdm.model.common.TermVocabulary;
+import eu.etaxonomy.cdm.model.common.User;
+import eu.etaxonomy.cdm.model.description.AbsenceTerm;
+import eu.etaxonomy.cdm.model.description.CategoricalData;
+import eu.etaxonomy.cdm.model.description.CommonTaxonName;
+import eu.etaxonomy.cdm.model.description.DescriptionBase;
+import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
+import eu.etaxonomy.cdm.model.description.Distribution;
+import eu.etaxonomy.cdm.model.description.Feature;
+import eu.etaxonomy.cdm.model.description.FeatureNode;
+import eu.etaxonomy.cdm.model.description.FeatureTree;
+import eu.etaxonomy.cdm.model.description.IdentificationKey;
+import eu.etaxonomy.cdm.model.description.IndividualsAssociation;
+import eu.etaxonomy.cdm.model.description.MeasurementUnit;
+import eu.etaxonomy.cdm.model.description.PresenceAbsenceTermBase;
+import eu.etaxonomy.cdm.model.description.PresenceTerm;
+import eu.etaxonomy.cdm.model.description.QuantitativeData;
+import eu.etaxonomy.cdm.model.description.Scope;
+import eu.etaxonomy.cdm.model.description.Sex;
+import eu.etaxonomy.cdm.model.description.SpecimenDescription;
+import eu.etaxonomy.cdm.model.description.Stage;
+import eu.etaxonomy.cdm.model.description.State;
+import eu.etaxonomy.cdm.model.description.StateData;
+import eu.etaxonomy.cdm.model.description.StatisticalMeasure;
+import eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue;
+import eu.etaxonomy.cdm.model.description.TaxonDescription;
+import eu.etaxonomy.cdm.model.description.TaxonInteraction;
+import eu.etaxonomy.cdm.model.description.TaxonNameDescription;
+import eu.etaxonomy.cdm.model.description.TextData;
+import eu.etaxonomy.cdm.model.description.TextFormat;
+import eu.etaxonomy.cdm.model.location.Continent;
+import eu.etaxonomy.cdm.model.location.NamedArea;
+import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
+import eu.etaxonomy.cdm.model.location.NamedAreaType;
+import eu.etaxonomy.cdm.model.location.Point;
+import eu.etaxonomy.cdm.model.location.ReferenceSystem;
+import eu.etaxonomy.cdm.model.location.TdwgArea;
+import eu.etaxonomy.cdm.model.location.WaterbodyOrCountry;
+import eu.etaxonomy.cdm.model.media.AudioFile;
+import eu.etaxonomy.cdm.model.media.ImageFile;
+import eu.etaxonomy.cdm.model.media.Media;
+import eu.etaxonomy.cdm.model.media.MediaRepresentation;
+import eu.etaxonomy.cdm.model.media.MediaRepresentationPart;
+import eu.etaxonomy.cdm.model.media.MovieFile;
+import eu.etaxonomy.cdm.model.media.ReferencedMedia;
+import eu.etaxonomy.cdm.model.media.Rights;
+import eu.etaxonomy.cdm.model.media.RightsTerm;
+import eu.etaxonomy.cdm.model.molecular.DnaSample;
+import eu.etaxonomy.cdm.model.molecular.GenBankAccession;
+import eu.etaxonomy.cdm.model.molecular.Locus;
+import eu.etaxonomy.cdm.model.molecular.PhylogeneticTree;
+import eu.etaxonomy.cdm.model.molecular.Sequence;
+import eu.etaxonomy.cdm.model.name.BacterialName;
+import eu.etaxonomy.cdm.model.name.BotanicalName;
+import eu.etaxonomy.cdm.model.name.CultivarPlantName;
+import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
+import eu.etaxonomy.cdm.model.name.HybridRelationship;
+import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
+import eu.etaxonomy.cdm.model.name.NameRelationship;
+import eu.etaxonomy.cdm.model.name.NameRelationshipType;
+import eu.etaxonomy.cdm.model.name.NameTypeDesignation;
+import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
+import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
+import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;
+import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
+import eu.etaxonomy.cdm.model.name.NonViralName;
+import eu.etaxonomy.cdm.model.name.Rank;
+import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
+import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;
+import eu.etaxonomy.cdm.model.name.TypeDesignationBase;
+import eu.etaxonomy.cdm.model.name.ViralName;
+import eu.etaxonomy.cdm.model.name.ZoologicalName;
+import eu.etaxonomy.cdm.model.occurrence.Collection;
+import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;
+import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
+import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
+import eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase;
+import eu.etaxonomy.cdm.model.occurrence.DeterminationEvent;
+import eu.etaxonomy.cdm.model.occurrence.DeterminationModifier;
+import eu.etaxonomy.cdm.model.occurrence.FieldObservation;
+import eu.etaxonomy.cdm.model.occurrence.Fossil;
+import eu.etaxonomy.cdm.model.occurrence.GatheringEvent;
+import eu.etaxonomy.cdm.model.occurrence.LivingBeing;
+import eu.etaxonomy.cdm.model.occurrence.Observation;
+import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
+import eu.etaxonomy.cdm.model.occurrence.Specimen;
+import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
+import eu.etaxonomy.cdm.model.reference.Article;
+import eu.etaxonomy.cdm.model.reference.BibtexEntryType;
+import eu.etaxonomy.cdm.model.reference.BibtexReference;
+import eu.etaxonomy.cdm.model.reference.Book;
+import eu.etaxonomy.cdm.model.reference.BookSection;
+import eu.etaxonomy.cdm.model.reference.CdDvd;
+import eu.etaxonomy.cdm.model.reference.Database;
+import eu.etaxonomy.cdm.model.reference.Generic;
+import eu.etaxonomy.cdm.model.reference.InProceedings;
+import eu.etaxonomy.cdm.model.reference.Journal;
+import eu.etaxonomy.cdm.model.reference.Map;
+import eu.etaxonomy.cdm.model.reference.Patent;
+import eu.etaxonomy.cdm.model.reference.PersonalCommunication;
+import eu.etaxonomy.cdm.model.reference.PrintSeries;
+import eu.etaxonomy.cdm.model.reference.PrintedUnitBase;
+import eu.etaxonomy.cdm.model.reference.Proceedings;
+import eu.etaxonomy.cdm.model.reference.Publisher;
+import eu.etaxonomy.cdm.model.reference.ReferenceBase;
+import eu.etaxonomy.cdm.model.reference.Report;
+import eu.etaxonomy.cdm.model.reference.SectionBase;
+import eu.etaxonomy.cdm.model.reference.StrictReferenceBase;
+import eu.etaxonomy.cdm.model.reference.Thesis;
+import eu.etaxonomy.cdm.model.reference.WebPage;
+import eu.etaxonomy.cdm.model.taxon.Synonym;
+import eu.etaxonomy.cdm.model.taxon.SynonymRelationship;
+import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
+import eu.etaxonomy.cdm.model.taxon.Taxon;
+import eu.etaxonomy.cdm.model.taxon.TaxonBase;
+import eu.etaxonomy.cdm.model.taxon.TaxonNode;
+import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
+import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
+import eu.etaxonomy.cdm.model.taxon.TaxonomicTree;
import eu.etaxonomy.cdm.persistence.dao.common.ICdmGenericDao;
-public abstract class CdmGenericDaoImpl extends CdmEntityDaoBase<CdmBase> implements ICdmGenericDao{
+@Repository
+public class CdmGenericDaoImpl extends CdmEntityDaoBase<CdmBase> implements ICdmGenericDao{
+ private static final Logger logger = Logger.getLogger(CdmGenericDaoImpl.class);
public CdmGenericDaoImpl() {
super(CdmBase.class);
}
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.cdm.persistence.dao.common.ICdmGenericDao#getCdmBasesByFieldAndClass(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.common.CdmBase)
+ */
+ public List<CdmBase> getCdmBasesByFieldAndClass(Class clazz, String propertyName, CdmBase referencedCdmBase){
+ Session session = super.getSession();
+ Criteria criteria = session.createCriteria(clazz);
+ criteria.add(Restrictions.eq(propertyName, referencedCdmBase));
+ return criteria.list();
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.cdm.persistence.dao.common.ICdmGenericDao#getCdmBasesByFieldAndClass(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.common.CdmBase)
+ */
+ public List<CdmBase> getCdmBasesWithItemInCollection(Class itemClass, Class clazz, String propertyName, CdmBase item){
+ Session session = super.getSession();
+ String thisClassStr = itemClass.getSimpleName();
+ String otherClassStr = clazz.getSimpleName();
+ String queryStr = " SELECT other FROM "+ thisClassStr + " this, " + otherClassStr + " other " +
+ " WHERE this = :referencedObject AND this member of other."+propertyName ;
+ Query query = session.createQuery(queryStr).setEntity("referencedObject", item);
+ List result = query.list();
+ return result;
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.cdm.persistence.dao.common.ICdmGenericDao#getAllCdmClasses(boolean)
+ */
+ public Set<Class<? extends CdmBase>> getAllCdmClasses(boolean includeAbstractClasses){
+ Set<Class<? extends CdmBase>> result = new HashSet<Class<? extends CdmBase>>();
+
+ SessionFactory sessionFactory = getSession().getSessionFactory();
+ java.util.Map allClassMetadata = sessionFactory.getAllClassMetadata();
+ java.util.Collection keys = allClassMetadata.keySet();
+ for (Object oKey : keys){
+ if (oKey instanceof String){
+ String strKey = (String)oKey;
+ if (! strKey.endsWith("_AUD")){
+ try {
+ Class clazz = Class.forName(strKey);
+ boolean isAbstractClass = Modifier.isAbstract(clazz.getModifiers());
+ if (! isAbstractClass || includeAbstractClasses){
+ result.add(clazz);
+ }
+ } catch (ClassNotFoundException e) {
+ logger.warn("Class not found: " + strKey);
+ }
+ }
+ }else{
+ logger.warn("key is not of type String: " + oKey);
+ }
+ }
+ return result;
+ }
+
+
+
+
+ public List getHqlResult(String hqlQuery){
+ Query query = getSession().createQuery(hqlQuery);
+ List result = query.list();
+ return result;
+ }
+
}
BGBM BDI Projects / cdmlib.git / blobdiff